RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 NLRP10Q86W26 655 aa17.37■□□□□ 0.37
CD44-224ENST00000526669 MTFR1LQ9H019 292 aa17.37■□□□□ 0.37
CD44-224ENST00000526669 KIF13BQ9NQT8 1826 aa17.37■□□□□ 0.37
CD44-224ENST00000526669 CARMIL3Q8ND23 1372 aa17.37■□□□□ 0.37
CD44-224ENST00000526669 RGL2O15211 777 aa17.36■□□□□ 0.37
CD44-224ENST00000526669 IRX6P78412 446 aaPredicted RBP17.36■□□□□ 0.37
CD44-224ENST00000526669 RTL5Q5HYW3 569 aaPredicted RBP17.36■□□□□ 0.37
CD44-224ENST00000526669 SUSD4Q5VX71 490 aa17.36■□□□□ 0.37
CD44-224ENST00000526669 ITPRIPQ8IWB1 547 aa17.36■□□□□ 0.37
CD44-224ENST00000526669 CCDC24Q8N4L8 307 aa17.36■□□□□ 0.37
CD44-224ENST00000526669 LINS1Q8NG48 757 aa17.36■□□□□ 0.37
CD44-224ENST00000526669 CWC25Q9NXE8 425 aaPredicted RBP17.36■□□□□ 0.37
CD44-224ENST00000526669 POLRMTO00411 1230 aaKnown RBP17.35■□□□□ 0.37
CD44-224ENST00000526669 CCT4P50991 539 aaKnown RBP17.35■□□□□ 0.37
CD44-224ENST00000526669 COG6Q9Y2V7 657 aa17.35■□□□□ 0.37
CD44-224ENST00000526669 PARP3Q9Y6F1 533 aa17.35■□□□□ 0.37
CD44-224ENST00000526669 RNF123Q5XPI4 1314 aa17.35■□□□□ 0.37
CD44-224ENST00000526669 COL11A2P13942 1736 aaPredicted RBP17.35■□□□□ 0.37
CD44-224ENST00000526669 SERPINB2P05120 415 aa17.34■□□□□ 0.37
CD44-224ENST00000526669 PARP10Q53GL7 1025 aa17.34■□□□□ 0.37
CD44-224ENST00000526669 NBPF5PQ86XG9 351 aaPredicted RBP17.34■□□□□ 0.37
CD44-224ENST00000526669 NUTM1Q86Y26 1132 aa17.34■□□□□ 0.37
CD44-224ENST00000526669 SYNE4Q8N205 404 aa17.34■□□□□ 0.37
CD44-224ENST00000526669 CCDC191Q8NCU4 936 aa17.34■□□□□ 0.37
CD44-224ENST00000526669 TRMT112Q9UI30 125 aaKnown RBP17.34■□□□□ 0.37
CD44-224ENST00000526669 NPHP1O15259 732 aa17.33■□□□□ 0.36
CD44-224ENST00000526669 ALDH1L1O75891 902 aa17.33■□□□□ 0.36
CD44-224ENST00000526669 NTSR2O95665 410 aa17.33■□□□□ 0.36
CD44-224ENST00000526669 MS4A1P11836 297 aa17.33■□□□□ 0.36
CD44-224ENST00000526669 GCKRQ14397 625 aa17.33■□□□□ 0.36
CD44-224ENST00000526669 INTS3Q68E01 1043 aaKnown RBP17.33■□□□□ 0.36
CD44-224ENST00000526669 PPP1R42Q7Z4L9 355 aa17.33■□□□□ 0.36
CD44-224ENST00000526669 UTP14AQ9BVJ6 771 aaKnown RBP17.33■□□□□ 0.36
CD44-224ENST00000526669 ABCC12Q96J65 1359 aa17.32■□□□□ 0.36
CD44-224ENST00000526669 POLD1P28340 1107 aa17.32■□□□□ 0.36
CD44-224ENST00000526669 TRIM28Q13263 835 aaKnown RBP17.32■□□□□ 0.36
CD44-224ENST00000526669 FAM89AQ96GI7 184 aa17.32■□□□□ 0.36
CD44-224ENST00000526669 KIAA1551Q9HCM1 1747 aa17.31■□□□□ 0.36
CD44-224ENST00000526669 GTF2E1P29083 439 aaPredicted RBP17.31■□□□□ 0.36
CD44-224ENST00000526669 PDE3AQ14432 1141 aa17.31■□□□□ 0.36
CD44-224ENST00000526669 ERFEQ4G0M1 354 aa17.31■□□□□ 0.36
CD44-224ENST00000526669 PRR5LQ6MZQ0 368 aa17.31■□□□□ 0.36
CD44-224ENST00000526669 UBE3BQ7Z3V4 1068 aa17.31■□□□□ 0.36
CD44-224ENST00000526669 CNBD1Q8NA66 436 aa17.31■□□□□ 0.36
CD44-224ENST00000526669 CRBNQ96SW2 442 aa17.31■□□□□ 0.36
CD44-224ENST00000526669 MEIS3Q99687 375 aa17.31■□□□□ 0.36
CD44-224ENST00000526669 NYXQ9GZU5 481 aa17.31■□□□□ 0.36
CD44-224ENST00000526669 C9orf78Q9NZ63 289 aaPredicted RBP17.31■□□□□ 0.36
CD44-224ENST00000526669 DLEC1Q9Y238 1755 aa17.3■□□□□ 0.36
CD44-224ENST00000526669 IBTKQ9P2D0 1353 aaPredicted RBP17.3■□□□□ 0.36
CD44-224ENST00000526669 PTGER2P43116 358 aa17.3■□□□□ 0.36
CD44-224ENST00000526669 MVPQ14764 893 aaKnown RBP17.3■□□□□ 0.36
CD44-224ENST00000526669 SPON1Q9HCB6 807 aa17.3■□□□□ 0.36
CD44-224ENST00000526669 SH3TC1Q8TE82 1336 aa17.29■□□□□ 0.36
CD44-224ENST00000526669 GRM8O00222 908 aa17.29■□□□□ 0.36
CD44-224ENST00000526669 PCCAP05165 728 aaPredicted RBP17.29■□□□□ 0.36
CD44-224ENST00000526669 HCLS1P14317 486 aaPredicted RBP17.29■□□□□ 0.36
CD44-224ENST00000526669 ZBTB38Q8NAP3 1195 aaPredicted RBP17.29■□□□□ 0.36
CD44-224ENST00000526669 SGIP1Q9BQI5 828 aa17.29■□□□□ 0.36
CD44-224ENST00000526669 BRCA1P38398 1863 aaKnown RBP17.29■□□□□ 0.36
CD44-224ENST00000526669 H7C1W4 665 aa17.28■□□□□ 0.36
CD44-224ENST00000526669 NBPF7P0C2Y1 421 aaPredicted RBP17.28■□□□□ 0.36
CD44-224ENST00000526669 CASP7P55210 303 aa17.28■□□□□ 0.36
CD44-224ENST00000526669 ST5P78524 1137 aa17.28■□□□□ 0.36
CD44-224ENST00000526669 TPTE2Q6XPS3 522 aa17.28■□□□□ 0.36
CD44-224ENST00000526669 KLHL34Q8N239 644 aa17.28■□□□□ 0.36
CD44-224ENST00000526669 USP44Q9H0E7 712 aa17.28■□□□□ 0.36
CD44-224ENST00000526669 IRS4O14654 1257 aaPredicted RBP17.27■□□□□ 0.36
CD44-224ENST00000526669 SUCLG2Q96I99 432 aa17.27■□□□□ 0.36
CD44-224ENST00000526669 C1orf115Q9H7X2 142 aa17.27■□□□□ 0.36
CD44-224ENST00000526669 LRP5O75197 1615 aa17.27■□□□□ 0.36
CD44-224ENST00000526669 UBTFL1P0CB47 393 aaPredicted RBP17.26■□□□□ 0.35
CD44-224ENST00000526669 DDX19BQ9UMR2 479 aa17.26■□□□□ 0.35
CD44-224ENST00000526669 C10orf71Q711Q0 1435 aa17.26■□□□□ 0.35
CD44-224ENST00000526669 CDHR2Q9BYE9 1310 aa17.25■□□□□ 0.35
CD44-224ENST00000526669 C3orf67Q6ZVT6 689 aa17.25■□□□□ 0.35
CD44-224ENST00000526669 EXOC6Q8TAG9 804 aa17.25■□□□□ 0.35
CD44-224ENST00000526669 PPP1R1BQ9UD71 204 aaPredicted RBP17.25■□□□□ 0.35
CD44-224ENST00000526669 LRRFIP2Q9Y608 721 aaKnown RBP17.25■□□□□ 0.35
CD44-224ENST00000526669 UTYO14607 1347 aa17.24■□□□□ 0.35
CD44-224ENST00000526669 COL4A1P02462 1669 aa17.24■□□□□ 0.35
CD44-224ENST00000526669 ZBTB7BO15156 539 aaPredicted RBP17.24■□□□□ 0.35
CD44-224ENST00000526669 EPHA10Q5JZY3 1008 aa17.24■□□□□ 0.35
CD44-224ENST00000526669 CCDC85AQ96PX6 553 aaPredicted RBP17.24■□□□□ 0.35
CD44-224ENST00000526669 A0A1B0GUL6 1792 aa17.23■□□□□ 0.35
CD44-224ENST00000526669 GNAI3P08754 354 aa17.23■□□□□ 0.35
CD44-224ENST00000526669 SLX4Q8IY92 1834 aa17.23■□□□□ 0.35
CD44-224ENST00000526669 RIC1Q4ADV7 1423 aa17.22■□□□□ 0.35
CD44-224ENST00000526669 PDE8AO60658 829 aa17.22■□□□□ 0.35
CD44-224ENST00000526669 KAZALD1Q96I82 304 aa17.22■□□□□ 0.35
CD44-224ENST00000526669 BICC1Q9H694 974 aaKnown RBP17.22■□□□□ 0.35
CD44-224ENST00000526669 CHMP3Q9Y3E7 222 aa17.22■□□□□ 0.35
CD44-224ENST00000526669 SLC10A5Q5PT55 438 aa17.21■□□□□ 0.35
CD44-224ENST00000526669 GNAI2P04899 355 aa17.2■□□□□ 0.34
CD44-224ENST00000526669 NEFLP07196 543 aa17.2■□□□□ 0.34
CD44-224ENST00000526669 CTSWP56202 376 aa17.2■□□□□ 0.34
CD44-224ENST00000526669 FOXO4P98177 505 aa17.2■□□□□ 0.34
CD44-224ENST00000526669 ANKRD44Q8N8A2 993 aa17.2■□□□□ 0.34
CD44-224ENST00000526669 NLRP3Q96P20 1036 aa17.2■□□□□ 0.34
CD44-224ENST00000526669 BRIP1Q9BX63 1249 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms