RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 NAA30Q147X3 362 aaPredicted RBP8.1□□□□□ -1.11
CD44-217ENST00000525348 HIF1AQ16665 826 aa8.1□□□□□ -1.11
CD44-217ENST00000525348 C11orf91Q3C1V1 193 aa8.1□□□□□ -1.11
CD44-217ENST00000525348 EDARADDQ8WWZ3 215 aa8.1□□□□□ -1.11
CD44-217ENST00000525348 COL26A1Q96A83 441 aa8.1□□□□□ -1.11
CD44-217ENST00000525348 LRRC4BQ9NT99 713 aa8.1□□□□□ -1.11
CD44-217ENST00000525348 KCNH4Q9UQ05 1017 aa8.1□□□□□ -1.11
CD44-217ENST00000525348 EPXP11678 715 aa8.09□□□□□ -1.11
CD44-217ENST00000525348 HOXB4P17483 251 aaPredicted RBP8.09□□□□□ -1.11
CD44-217ENST00000525348 ADH6P28332 368 aa8.09□□□□□ -1.11
CD44-217ENST00000525348 INPP5BP32019 993 aa8.09□□□□□ -1.11
CD44-217ENST00000525348 IDH3AP50213 366 aa8.09□□□□□ -1.11
CD44-217ENST00000525348 SPEM2Q0P670 501 aa8.09□□□□□ -1.11
CD44-217ENST00000525348 MDFIQ99750 246 aa8.09□□□□□ -1.11
CD44-217ENST00000525348 AVENQ9NQS1 362 aaPredicted RBP8.09□□□□□ -1.11
CD44-217ENST00000525348 SEPT3Q9UH03 358 aa8.09□□□□□ -1.11
CD44-217ENST00000525348 PRR12Q9ULL5 1215 aa8.09□□□□□ -1.11
CD44-217ENST00000525348 OPLAHO14841 1288 aa8.08□□□□□ -1.12
CD44-217ENST00000525348 MICAL2O94851 1124 aa8.08□□□□□ -1.12
CD44-217ENST00000525348 C16orf46Q6P387 395 aa8.08□□□□□ -1.12
CD44-217ENST00000525348 SYT9Q86SS6 491 aa8.08□□□□□ -1.12
CD44-217ENST00000525348 IFT43Q96FT9 208 aa8.08□□□□□ -1.12
CD44-217ENST00000525348 SNRPNP63162 240 aaKnown RBP8.07□□□□□ -1.12
CD44-217ENST00000525348 PHLDB3Q6NSJ2 640 aa8.07□□□□□ -1.12
CD44-217ENST00000525348 ETFBKMTQ8IXQ9 262 aa8.07□□□□□ -1.12
CD44-217ENST00000525348 NEDD1Q8NHV4 660 aa8.07□□□□□ -1.12
CD44-217ENST00000525348 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.07□□□□□ -1.125e-38■■■■■ 698.7
CD44-217ENST00000525348 USP20Q9Y2K6 914 aa8.07□□□□□ -1.12
CD44-217ENST00000525348 CNTNAP5Q8WYK1 1306 aa8.06□□□□□ -1.12
CD44-217ENST00000525348 SSFA2P28290 1259 aa8.06□□□□□ -1.12
CD44-217ENST00000525348 TREML1Q86YW5 311 aa8.06□□□□□ -1.12
CD44-217ENST00000525348 BTBD6Q96KE9 485 aa8.06□□□□□ -1.12
CD44-217ENST00000525348 ENAMQ9NRM1 1142 aa8.06□□□□□ -1.12
CD44-217ENST00000525348 PTCD1O75127 700 aaKnown RBP8.05□□□□□ -1.12
CD44-217ENST00000525348 SIN3BO75182 1162 aa8.05□□□□□ -1.12
CD44-217ENST00000525348 ARSDP51689 593 aa8.05□□□□□ -1.12
CD44-217ENST00000525348 MARSP56192 900 aaKnown RBP8.05□□□□□ -1.12
CD44-217ENST00000525348 GSX2Q9BZM3 304 aa8.05□□□□□ -1.12
CD44-217ENST00000525348 KCNMA1Q12791 1236 aa8.04□□□□□ -1.12
CD44-217ENST00000525348 BHMTQ93088 406 aa8.04□□□□□ -1.12
CD44-217ENST00000525348 ZBTB39O15060 712 aa8.03□□□□□ -1.12
CD44-217ENST00000525348 RTCBQ9Y3I0 505 aaKnown RBP8.03□□□□□ -1.12
CD44-217ENST00000525348 IRS1P35568 1242 aa8.02□□□□□ -1.13
CD44-217ENST00000525348 CHSY3Q70JA7 882 aa8.02□□□□□ -1.13
CD44-217ENST00000525348 RETREG2Q8NC44 543 aa8.02□□□□□ -1.13
CD44-217ENST00000525348 TNFRSF25Q93038 417 aa8.02□□□□□ -1.13
CD44-217ENST00000525348 ELOA3CA0A087WX78 387 aaPredicted RBP8.01□□□□□ -1.13
CD44-217ENST00000525348 ELOA3DA6NLF2 546 aaPredicted RBP8.01□□□□□ -1.13
CD44-217ENST00000525348 ADARB2-AS1A8MUL3 147 aa8.01□□□□□ -1.13
CD44-217ENST00000525348 NFKB1P19838 968 aa8.01□□□□□ -1.13
CD44-217ENST00000525348 AMPD1P23109 780 aa8.01□□□□□ -1.13
CD44-217ENST00000525348 BRD2P25440 801 aaKnown RBP8.01□□□□□ -1.13
CD44-217ENST00000525348 DGKGP49619 791 aa8.01□□□□□ -1.13
CD44-217ENST00000525348 CCINQ13939 588 aa8.01□□□□□ -1.13
CD44-217ENST00000525348 ELOA3BQ3SY89 546 aa8.01□□□□□ -1.13
CD44-217ENST00000525348 LINC00114Q6XXX2 140 aa8.01□□□□□ -1.13
CD44-217ENST00000525348 RGL4Q8IZJ4 473 aa8.01□□□□□ -1.13
CD44-217ENST00000525348 ELOA3Q8NG57 546 aa8.01□□□□□ -1.13
CD44-217ENST00000525348 SCARF2Q96GP6 870 aaPredicted RBP8.01□□□□□ -1.13
CD44-217ENST00000525348 ZFATQ9P243 1243 aa8.01□□□□□ -1.13
CD44-217ENST00000525348 USTQ9Y2C2 406 aa8.01□□□□□ -1.13
CD44-217ENST00000525348 STARD13Q9Y3M8 1113 aa8.01□□□□□ -1.13
CD44-217ENST00000525348 KCNMB2Q9Y691 235 aa8.01□□□□□ -1.13
CD44-217ENST00000525348 EPB42P16452 691 aa8□□□□□ -1.13
CD44-217ENST00000525348 TRIP4Q15650 581 aaPredicted RBP8□□□□□ -1.13
CD44-217ENST00000525348 KRT25Q7Z3Z0 450 aa8□□□□□ -1.13
CD44-217ENST00000525348 RRAGCQ9HB90 399 aa8□□□□□ -1.13
CD44-217ENST00000525348 STIM2Q9P246 746 aa8□□□□□ -1.13
CD44-217ENST00000525348 TARSP26639 723 aaKnown RBP7.99□□□□□ -1.13
CD44-217ENST00000525348 ADH7P40394 386 aa7.99□□□□□ -1.13
CD44-217ENST00000525348 RASSF7Q02833 373 aa7.99□□□□□ -1.13
CD44-217ENST00000525348 GTF3C2Q8WUA4 911 aaPredicted RBP7.99□□□□□ -1.13
CD44-217ENST00000525348 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.99□□□□□ -1.13
CD44-217ENST00000525348 SASH3O75995 380 aa7.98□□□□□ -1.13
CD44-217ENST00000525348 ZAP70P43403 619 aa7.98□□□□□ -1.13
CD44-217ENST00000525348 NEUROD1Q13562 356 aa7.98□□□□□ -1.13
CD44-217ENST00000525348 MTMR3Q13615 1198 aa7.98□□□□□ -1.13
CD44-217ENST00000525348 CMTR1Q8N1G2 835 aaKnown RBP7.98□□□□□ -1.13
CD44-217ENST00000525348 BEND7Q8N7W2 519 aaPredicted RBP7.98□□□□□ -1.13
CD44-217ENST00000525348 HELQQ8TDG4 1101 aa7.98□□□□□ -1.13
CD44-217ENST00000525348 SUV39H2Q9H5I1 410 aa7.98□□□□□ -1.13
CD44-217ENST00000525348 RNF225M0QZC1 329 aaPredicted RBP7.97□□□□□ -1.13
CD44-217ENST00000525348 EGFRP00533 1210 aa7.97□□□□□ -1.13
CD44-217ENST00000525348 ALBP02768 609 aa7.97□□□□□ -1.13
CD44-217ENST00000525348 TBC1D8BQ0IIM8 1120 aa7.97□□□□□ -1.13
CD44-217ENST00000525348 ATCAYQ86WG3 371 aa7.97□□□□□ -1.13
CD44-217ENST00000525348 PNMA5Q96PV4 448 aa7.97□□□□□ -1.13
CD44-217ENST00000525348 UBE2OQ9C0C9 1292 aaKnown RBP7.97□□□□□ -1.13
CD44-217ENST00000525348 NAGPAQ9UK23 515 aa7.97□□□□□ -1.13
CD44-217ENST00000525348 XYLBO75191 536 aa7.96□□□□□ -1.14
CD44-217ENST00000525348 COL8A1P27658 744 aa7.96□□□□□ -1.14
CD44-217ENST00000525348 C8orf86Q6ZUL3 223 aa7.96□□□□□ -1.14
CD44-217ENST00000525348 PODNQ7Z5L7 613 aa7.96□□□□□ -1.14
CD44-217ENST00000525348 GPR152Q8TDT2 470 aa7.96□□□□□ -1.14
CD44-217ENST00000525348 IGFLR1Q9H665 355 aa7.96□□□□□ -1.14
CD44-217ENST00000525348 EFCC1Q9HA90 598 aa7.96□□□□□ -1.14
CD44-217ENST00000525348 C11orf16Q9NQ32 467 aa7.96□□□□□ -1.14
CD44-217ENST00000525348 DNAJB12Q9NXW2 375 aaKnown RBP7.96□□□□□ -1.14
CD44-217ENST00000525348 MKL2Q9ULH7 1088 aa7.96□□□□□ -1.14
CD44-217ENST00000525348 SLC6A14Q9UN76 642 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms