RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 PNNQ9H307 717 aaKnown RBP3.85□□□□□ -1.79
MCF2-208ENST00000519895 CLEC11AQ9Y240 323 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 ZNF462Q96JM2 2506 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 ARFGEF2Q9Y6D5 1785 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 CNTNAP3BQ96NU0 1288 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 CNTNAP3Q9BZ76 1288 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 SSUH2Q9Y2M2 353 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 SOS1Q07889 1333 aaPredicted RBP3.85□□□□□ -1.79
MCF2-208ENST00000519895 TDHQ8IZJ6 230 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 ABTB2Q8N961 1025 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 CARD14Q9BXL6 1004 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 UBR2Q8IWV8 1755 aa3.85□□□□□ -1.79
MCF2-208ENST00000519895 FAM205AQ6ZU69 1335 aa3.84□□□□□ -1.79
MCF2-208ENST00000519895 CNTNAP4Q9C0A0 1308 aa3.84□□□□□ -1.79
MCF2-208ENST00000519895 POTEJP0CG39 1038 aa3.84□□□□□ -1.79
MCF2-208ENST00000519895 DPEP1P16444 411 aa3.84□□□□□ -1.79
MCF2-208ENST00000519895 PTPN5P54829 565 aa3.84□□□□□ -1.79
MCF2-208ENST00000519895 ZNF697Q5TEC3 545 aa3.84□□□□□ -1.79
MCF2-208ENST00000519895 HACL1Q9UJ83 578 aa3.84□□□□□ -1.79
MCF2-208ENST00000519895 PROB1E7EW31 1015 aa3.84□□□□□ -1.79
MCF2-208ENST00000519895 PAK3O75914 559 aaPredicted RBP3.84□□□□□ -1.79
MCF2-208ENST00000519895 AMOTQ4VCS5 1084 aa3.84□□□□□ -1.79
MCF2-208ENST00000519895 SLC12A5Q9H2X9 1139 aa3.84□□□□□ -1.79
MCF2-208ENST00000519895 KNSTRNQ9Y448 316 aa3.84□□□□□ -1.79
MCF2-208ENST00000519895 PCNTO95613 3336 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 HSP90AB1P08238 724 aaKnown RBP3.83□□□□□ -1.8
MCF2-208ENST00000519895 HOXC9P31274 260 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 NLRP6P59044 892 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 XPCQ01831 940 aaPredicted RBP3.83□□□□□ -1.8
MCF2-208ENST00000519895 CST9Q5W186 159 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 NKX2-3Q8TAU0 364 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 FBXL18Q96ME1 805 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 C11orf16Q9NQ32 467 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 ZNF609O15014 1411 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 FAM155AB1AL88 458 aaPredicted RBP3.83□□□□□ -1.8
MCF2-208ENST00000519895 ASTLQ6HA08 431 aaPredicted RBP3.83□□□□□ -1.8
MCF2-208ENST00000519895 LARP1Q6PKG0 1096 aaKnown RBP3.83□□□□□ -1.8
MCF2-208ENST00000519895 HS6ST3Q8IZP7 471 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 CDX2Q99626 313 aaPredicted RBP3.83□□□□□ -1.8
MCF2-208ENST00000519895 THEGQ9P2T0 379 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 NTRK1P04629 796 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 SSFA2P28290 1259 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 SLC4A5Q9BY07 1137 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 IRS2Q9Y4H2 1338 aa3.83□□□□□ -1.8
MCF2-208ENST00000519895 FKTNO75072 461 aa3.82□□□□□ -1.8
MCF2-208ENST00000519895 AKNAD1Q5T1N1 836 aa3.82□□□□□ -1.8
MCF2-208ENST00000519895 PANK3Q9H999 370 aa3.82□□□□□ -1.8
MCF2-208ENST00000519895 SH2B1Q9NRF2 756 aaPredicted RBP3.82□□□□□ -1.8
MCF2-208ENST00000519895 SNPHO15079 494 aa3.82□□□□□ -1.8
MCF2-208ENST00000519895 ZNF333Q96JL9 665 aa3.82□□□□□ -1.8
MCF2-208ENST00000519895 PKN1Q16512 942 aa3.82□□□□□ -1.8
MCF2-208ENST00000519895 MSL1Q68DK7 614 aa3.82□□□□□ -1.8
MCF2-208ENST00000519895 IL27Q8NEV9 243 aa3.82□□□□□ -1.8
MCF2-208ENST00000519895 ZNF296Q8WUU4 475 aaPredicted RBP3.82□□□□□ -1.8
MCF2-208ENST00000519895 CHMP4AQ9BY43 222 aa3.82□□□□□ -1.8
MCF2-208ENST00000519895 STRN4Q9NRL3 753 aa3.82□□□□□ -1.8
MCF2-208ENST00000519895 POLKQ9UBT6 870 aa3.82□□□□□ -1.8
MCF2-208ENST00000519895 MYBBP1AQ9BQG0 1328 aaKnown RBP3.82□□□□□ -1.8
MCF2-208ENST00000519895 PCDH11XQ9BZA7 1347 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 PCDH11YQ9BZA8 1340 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 A0A0G2JLW4 131 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 ERVV-2B6SEH9 535 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 EPHX2P34913 555 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 IL13P35225 146 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 EIF5P55010 431 aaKnown RBP3.81□□□□□ -1.8
MCF2-208ENST00000519895 DPF3Q92784 378 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 CFAP53Q96M91 514 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 SPTBN5Q9NRC6 3674 aaKnown RBP3.81□□□□□ -1.8
MCF2-208ENST00000519895 ITGB4P16144 1822 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 RGPD2P0DJD1 1756 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 IL2RBP14784 551 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 BCAMP50895 628 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 NME9Q86XW9 330 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 METRNQ9UJH8 293 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 NRXN2Q9P2S2 1712 aa3.81□□□□□ -1.8
MCF2-208ENST00000519895 CCER2I3L3R5 266 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 CCDC27Q2M243 656 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 AAK1Q2M2I8 961 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 PIK3R5Q8WYR1 880 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 EPHX3Q9H6B9 360 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 PTPN22Q9Y2R2 807 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 DOT1LQ8TEK3 1739 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 CEMIPQ8WUJ3 1361 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 ZNF316A6NFI3 1004 aaPredicted RBP3.8□□□□□ -1.8
MCF2-208ENST00000519895 EXOC5O00471 708 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 GFRA3O60609 400 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 SMARCC1Q92922 1105 aaPredicted RBP3.8□□□□□ -1.8
MCF2-208ENST00000519895 SPG7Q9UQ90 795 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 NUDCQ9Y266 331 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 CACNA1FO60840 1977 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 GPR25O00155 361 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 NBPF11Q86T75 865 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 MORC1Q86VD1 984 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 PDZRN3Q9UPQ7 1066 aa3.8□□□□□ -1.8
MCF2-208ENST00000519895 SCN7AQ01118 1682 aa3.79□□□□□ -1.8
MCF2-208ENST00000519895 PLXNA3P51805 1871 aa3.79□□□□□ -1.8
MCF2-208ENST00000519895 IL16Q14005 1332 aa3.79□□□□□ -1.8
MCF2-208ENST00000519895 SH3TC1Q8TE82 1336 aa3.79□□□□□ -1.8
MCF2-208ENST00000519895 ZNF541Q9H0D2 1346 aa3.79□□□□□ -1.8
MCF2-208ENST00000519895 TRPA1O75762 1119 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms