RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 RPGRQ92834 1020 aaKnown RBP22.78■■□□□ 1.24
DDX41-217ENST00000515562 RNF123Q5XPI4 1314 aa22.78■■□□□ 1.24
DDX41-217ENST00000515562 CALD1Q05682 793 aaKnown RBP22.77■■□□□ 1.24
DDX41-217ENST00000515562 HDGFL1Q5TGJ6 251 aa22.77■■□□□ 1.24
DDX41-217ENST00000515562 COPS6Q7L5N1 327 aa22.77■■□□□ 1.24
DDX41-217ENST00000515562 XAGE3Q8WTP9 111 aa22.77■■□□□ 1.24
DDX41-217ENST00000515562 HOXA10P31260 410 aaPredicted RBP22.76■■□□□ 1.23
DDX41-217ENST00000515562 UTP14AQ9BVJ6 771 aaKnown RBP22.76■■□□□ 1.23
DDX41-217ENST00000515562 APAF1O14727 1248 aa22.75■■□□□ 1.23
DDX41-217ENST00000515562 AIMP1Q12904 312 aaKnown RBP22.75■■□□□ 1.23
DDX41-217ENST00000515562 CC2D2BQ6DHV5 1058 aa22.75■■□□□ 1.23
DDX41-217ENST00000515562 CHPF2Q9P2E5 772 aa22.75■■□□□ 1.23
DDX41-217ENST00000515562 MBIPQ9NS73 344 aa22.74■■□□□ 1.23
DDX41-217ENST00000515562 SNED1Q8TER0 1413 aa22.74■■□□□ 1.23
DDX41-217ENST00000515562 OLFM4Q6UX06 510 aa22.73■■□□□ 1.23
DDX41-217ENST00000515562 RBM17Q96I25 401 aaKnown RBP22.73■■□□□ 1.23
DDX41-217ENST00000515562 NLRP3Q96P20 1036 aa22.73■■□□□ 1.23
DDX41-217ENST00000515562 IFT57Q9NWB7 429 aa22.73■■□□□ 1.23
DDX41-217ENST00000515562 DBF4Q9UBU7 674 aaPredicted RBP22.73■■□□□ 1.23
DDX41-217ENST00000515562 ZNF853P0CG23 659 aa22.72■■□□□ 1.23
DDX41-217ENST00000515562 GRIPAP1Q4V328 841 aa22.72■■□□□ 1.23
DDX41-217ENST00000515562 CRAMP1Q96RY5 1269 aa22.72■■□□□ 1.23
DDX41-217ENST00000515562 PSMD1Q99460 953 aa22.72■■□□□ 1.23
DDX41-217ENST00000515562 ZNF277Q9NRM2 450 aaPredicted RBP22.72■■□□□ 1.23
DDX41-217ENST00000515562 GNAI1P63096 354 aa22.71■■□□□ 1.23
DDX41-217ENST00000515562 TCIRG1Q13488 830 aa22.71■■□□□ 1.23
DDX41-217ENST00000515562 SLC10A5Q5PT55 438 aa22.71■■□□□ 1.23
DDX41-217ENST00000515562 DUSP27Q5VZP5 1158 aa22.71■■□□□ 1.23
DDX41-217ENST00000515562 NLRP10Q86W26 655 aa22.71■■□□□ 1.23
DDX41-217ENST00000515562 POTECB2RU33 542 aa22.7■■□□□ 1.22
DDX41-217ENST00000515562 IARSP41252 1262 aaKnown RBP22.7■■□□□ 1.22
DDX41-217ENST00000515562 HYPKQ9NX55 129 aa22.7■■□□□ 1.22
DDX41-217ENST00000515562 PPEF1O14829 653 aaPredicted RBP22.69■■□□□ 1.22
DDX41-217ENST00000515562 DDNO94850 711 aaPredicted RBP22.69■■□□□ 1.22
DDX41-217ENST00000515562 C3orf67Q6ZVT6 689 aa22.69■■□□□ 1.22
DDX41-217ENST00000515562 PLBD2Q8NHP8 589 aa22.69■■□□□ 1.22
DDX41-217ENST00000515562 SCN4AP35499 1836 aa22.68■■□□□ 1.22
DDX41-217ENST00000515562 LAMB2P55268 1798 aa22.68■■□□□ 1.22
DDX41-217ENST00000515562 SH3TC1Q8TE82 1336 aa22.68■■□□□ 1.22
DDX41-217ENST00000515562 IQCA1LA6NCM1 817 aa22.68■■□□□ 1.22
DDX41-217ENST00000515562 SYNE4Q8N205 404 aa22.68■■□□□ 1.22
DDX41-217ENST00000515562 L3MBTL3Q96JM7 780 aaPredicted RBP22.68■■□□□ 1.22
DDX41-217ENST00000515562 ANKRD13DQ6ZTN6 518 aa22.67■■□□□ 1.22
DDX41-217ENST00000515562 TRMT112Q9UI30 125 aaKnown RBP22.67■■□□□ 1.22
DDX41-217ENST00000515562 TMX4Q9H1E5 349 aaPredicted RBP22.66■■□□□ 1.22
DDX41-217ENST00000515562 ABCC4O15439 1325 aa22.65■■□□□ 1.22
DDX41-217ENST00000515562 ZNF541Q9H0D2 1346 aa22.65■■□□□ 1.22
DDX41-217ENST00000515562 DNAJC5GQ8N7S2 189 aa22.65■■□□□ 1.22
DDX41-217ENST00000515562 JDP2Q8WYK2 163 aa22.65■■□□□ 1.22
DDX41-217ENST00000515562 CHMP4AQ9BY43 222 aa22.65■■□□□ 1.22
DDX41-217ENST00000515562 FZD9O00144 591 aa22.64■■□□□ 1.21
DDX41-217ENST00000515562 ZNF316A6NFI3 1004 aaPredicted RBP22.63■■□□□ 1.21
DDX41-217ENST00000515562 HCLS1P14317 486 aaPredicted RBP22.63■■□□□ 1.21
DDX41-217ENST00000515562 CCDC184Q52MB2 194 aa22.63■■□□□ 1.21
DDX41-217ENST00000515562 ATP6V0A2Q9Y487 856 aa22.63■■□□□ 1.21
DDX41-217ENST00000515562 DDX60Q8IY21 1712 aaKnown RBP22.62■■□□□ 1.21
DDX41-217ENST00000515562 GOLGA2Q08379 1002 aa22.62■■□□□ 1.21
DDX41-217ENST00000515562 CCDC27Q2M243 656 aa22.62■■□□□ 1.21
DDX41-217ENST00000515562 ISCA1Q9BUE6 129 aa22.62■■□□□ 1.21
DDX41-217ENST00000515562 TCERG1O14776 1098 aaKnown RBP22.61■■□□□ 1.21
DDX41-217ENST00000515562 ANP32CO43423 234 aa22.61■■□□□ 1.21
DDX41-217ENST00000515562 BBOX1O75936 387 aa22.61■■□□□ 1.21
DDX41-217ENST00000515562 HTRA3P83110 453 aa22.61■■□□□ 1.21
DDX41-217ENST00000515562 CHADLQ6NUI6 762 aa22.61■■□□□ 1.21
DDX41-217ENST00000515562 DDX46Q7L014 1031 aaKnown RBP22.61■■□□□ 1.21
DDX41-217ENST00000515562 GPC2Q8N158 579 aa22.61■■□□□ 1.21
DDX41-217ENST00000515562 COL4A5P29400 1685 aa22.61■■□□□ 1.21
DDX41-217ENST00000515562 ELL2O00472 640 aaPredicted RBP22.6■■□□□ 1.21
DDX41-217ENST00000515562 LARGE2Q8N3Y3 721 aa22.6■■□□□ 1.21
DDX41-217ENST00000515562 KLRG1Q96E93 195 aa22.6■■□□□ 1.21
DDX41-217ENST00000515562 TAF1DQ9H5J8 278 aaPredicted RBP22.6■■□□□ 1.21
DDX41-217ENST00000515562 EIF6P56537 245 aaKnown RBP22.59■■□□□ 1.21
DDX41-217ENST00000515562 TRIM28Q13263 835 aaKnown RBP22.59■■□□□ 1.21
DDX41-217ENST00000515562 LDHDQ86WU2 507 aa22.59■■□□□ 1.21
DDX41-217ENST00000515562 VPS33BQ9H267 617 aa22.59■■□□□ 1.21
DDX41-217ENST00000515562 MRS2Q9HD23 443 aa22.59■■□□□ 1.21
DDX41-217ENST00000515562 HACL1Q9UJ83 578 aa22.59■■□□□ 1.21
DDX41-217ENST00000515562 ATP5J2-PTCD1G3V325 749 aa22.58■■□□□ 1.21
DDX41-217ENST00000515562 GRAPQ13588 217 aa22.58■■□□□ 1.21
DDX41-217ENST00000515562 CCDC30Q5VVM6 783 aa22.58■■□□□ 1.21
DDX41-217ENST00000515562 TMC4Q7Z404 712 aa22.58■■□□□ 1.21
DDX41-217ENST00000515562 RIC3Q7Z5B4 369 aa22.58■■□□□ 1.21
DDX41-217ENST00000515562 C8orf58Q8NAV2 365 aa22.58■■□□□ 1.21
DDX41-217ENST00000515562 SUPT20HQ8NEM7 779 aa22.58■■□□□ 1.21
DDX41-217ENST00000515562 GRAPLQ8TC17 118 aaPredicted RBP22.58■■□□□ 1.21
DDX41-217ENST00000515562 LRRC37AA6NMS7 1700 aa22.57■■□□□ 1.2
DDX41-217ENST00000515562 POTEIP0CG38 1075 aa22.57■■□□□ 1.2
DDX41-217ENST00000515562 POTEJP0CG39 1038 aa22.57■■□□□ 1.2
DDX41-217ENST00000515562 NCBP3Q53F19 620 aaKnown RBP22.57■■□□□ 1.2
DDX41-217ENST00000515562 SLC51AQ86UW1 340 aa22.57■■□□□ 1.2
DDX41-217ENST00000515562 SP8Q8IXZ3 490 aa22.57■■□□□ 1.2
DDX41-217ENST00000515562 NIM1KQ8IY84 436 aa22.57■■□□□ 1.2
DDX41-217ENST00000515562 FAM89AQ96GI7 184 aa22.57■■□□□ 1.2
DDX41-217ENST00000515562 PPIP5K2O43314 1243 aa22.56■■□□□ 1.2
DDX41-217ENST00000515562 DPP8Q6V1X1 898 aaPredicted RBP22.56■■□□□ 1.2
DDX41-217ENST00000515562 WWC1Q8IX03 1113 aa22.56■■□□□ 1.2
DDX41-217ENST00000515562 RTFDC1Q9BY42 306 aaPredicted RBP22.56■■□□□ 1.2
DDX41-217ENST00000515562 PHAXQ9H814 394 aaKnown RBP22.56■■□□□ 1.2
DDX41-217ENST00000515562 ADAMTSL1Q8N6G6 1762 aa22.55■■□□□ 1.2
DDX41-217ENST00000515562 DDX58O95786 925 aaKnown RBP22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms