RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, human

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP54-215	ENST00000514313	LYSMD3	Q7Z3D4	306 aa		11.74	□□□□□ -0.53
NUP54-215	ENST00000514313	RHOQ	P17081	205 aa		11.73	□□□□□ -0.53
NUP54-215	ENST00000514313	ERCC5	P28715	1186 aa	Predicted RBP	11.73	□□□□□ -0.53
NUP54-215	ENST00000514313	ITGAE	P38570	1179 aa		11.73	□□□□□ -0.53
NUP54-215	ENST00000514313	ARSD	P51689	593 aa		11.73	□□□□□ -0.53
NUP54-215	ENST00000514313	TRIP4	Q15650	581 aa	Predicted RBP	11.73	□□□□□ -0.53
NUP54-215	ENST00000514313	C9orf131	Q5VYM1	1079 aa		11.73	□□□□□ -0.53
NUP54-215	ENST00000514313	MRPL14	Q6P1L8	145 aa	Known RBP	11.73	□□□□□ -0.53
NUP54-215	ENST00000514313	BTLA	Q7Z6A9	289 aa		11.73	□□□□□ -0.53
NUP54-215	ENST00000514313	ZIC5	Q96T25	663 aa		11.73	□□□□□ -0.53
NUP54-215	ENST00000514313	INPP5B	P32019	993 aa		11.72	□□□□□ -0.53
NUP54-215	ENST00000514313	DNAJC25	Q9H1X3	360 aa		11.72	□□□□□ -0.53
NUP54-215	ENST00000514313	ANKIB1	Q9P2G1	1089 aa		11.72	□□□□□ -0.53
NUP54-215	ENST00000514313	FOXD3	Q9UJU5	478 aa	Predicted RBP	11.72	□□□□□ -0.53
NUP54-215	ENST00000514313	CPNE3	O75131	537 aa	Known RBP	11.71	□□□□□ -0.53
NUP54-215	ENST00000514313	NEFL	P07196	543 aa		11.71	□□□□□ -0.53
NUP54-215	ENST00000514313	WDR44	Q5JSH3	913 aa		11.71	□□□□□ -0.53
NUP54-215	ENST00000514313	LRRC69	Q6ZNQ3	347 aa		11.71	□□□□□ -0.53
NUP54-215	ENST00000514313	RTCB	Q9Y3I0	505 aa	Known RBP	11.71	□□□□□ -0.53
NUP54-215	ENST00000514313		A0A1B0GTH6	734 aa		11.7	□□□□□ -0.54
NUP54-215	ENST00000514313	MSX1	P28360	303 aa		11.7	□□□□□ -0.54
NUP54-215	ENST00000514313	ARSJ	Q5FYB0	599 aa	Predicted RBP	11.7	□□□□□ -0.54
NUP54-215	ENST00000514313	USPL1	Q5W0Q7	1092 aa		11.7	□□□□□ -0.54
NUP54-215	ENST00000514313	TIMMDC1	Q9NPL8	285 aa		11.7	□□□□□ -0.54
NUP54-215	ENST00000514313	TNFRSF21	O75509	655 aa		11.69	□□□□□ -0.54
NUP54-215	ENST00000514313	FANCC	Q00597	558 aa		11.69	□□□□□ -0.54
NUP54-215	ENST00000514313	NAALADL2	Q58DX5	795 aa		11.69	□□□□□ -0.54
NUP54-215	ENST00000514313	METTL16	Q86W50	562 aa	Known RBP	11.69	□□□□□ -0.54
NUP54-215	ENST00000514313	CMTR1	Q8N1G2	835 aa	Known RBP	11.69	□□□□□ -0.54
NUP54-215	ENST00000514313	NEUROD4	Q9HD90	331 aa		11.69	□□□□□ -0.54
NUP54-215	ENST00000514313	KCNMB2	Q9Y691	235 aa		11.69	□□□□□ -0.54
NUP54-215	ENST00000514313	TTLL8	A6PVC2	850 aa		11.68	□□□□□ -0.54
NUP54-215	ENST00000514313	BMP1	P13497	986 aa		11.68	□□□□□ -0.54
NUP54-215	ENST00000514313	GRN	P28799	593 aa	Known RBP	11.68	□□□□□ -0.54
NUP54-215	ENST00000514313	TYRO3	Q06418	890 aa		11.68	□□□□□ -0.54
NUP54-215	ENST00000514313	RAD51AP2	Q09MP3	1159 aa		11.68	□□□□□ -0.54
NUP54-215	ENST00000514313	ZNF438	Q7Z4V0	828 aa		11.68	□□□□□ -0.54
NUP54-215	ENST00000514313		A0A1W2PNR3	127 aa		11.67	□□□□□ -0.54
NUP54-215	ENST00000514313	XKR5	Q6UX68	686 aa		11.67	□□□□□ -0.54
NUP54-215	ENST00000514313	PI16	Q6UXB8	463 aa		11.67	□□□□□ -0.54
NUP54-215	ENST00000514313	SNX29	Q8TEQ0	813 aa		11.67	□□□□□ -0.54
NUP54-215	ENST00000514313	METTL5	Q9NRN9	209 aa	Known RBP	11.67	□□□□□ -0.54
NUP54-215	ENST00000514313	AK5	Q9Y6K8	562 aa		11.67	□□□□□ -0.54
NUP54-215	ENST00000514313	UBAP1L	F5GYI3	381 aa		11.66	□□□□□ -0.54
NUP54-215	ENST00000514313	CTSH	P09668	335 aa		11.66	□□□□□ -0.54
NUP54-215	ENST00000514313	PDE12	Q6L8Q7	609 aa	Known RBP	11.66	□□□□□ -0.54
NUP54-215	ENST00000514313	NT5DC4	Q86YG4	428 aa		11.66	□□□□□ -0.54
NUP54-215	ENST00000514313	SREK1	Q8WXA9	508 aa	Known RBP	11.66	□□□□□ -0.54
NUP54-215	ENST00000514313	TMEM63C	Q9P1W3	806 aa		11.66	□□□□□ -0.54
NUP54-215	ENST00000514313	SPG7	Q9UQ90	795 aa		11.66	□□□□□ -0.54
NUP54-215	ENST00000514313	FNDC3A	Q9Y2H6	1198 aa	Known RBP	11.66	□□□□□ -0.54
NUP54-215	ENST00000514313	FIGNL2	A6NMB9	653 aa		11.65	□□□□□ -0.54
NUP54-215	ENST00000514313	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	11.65	□□□□□ -0.54
NUP54-215	ENST00000514313	CRELD1	Q96HD1	420 aa		11.65	□□□□□ -0.54
NUP54-215	ENST00000514313	FRMD6	Q96NE9	622 aa		11.65	□□□□□ -0.54
NUP54-215	ENST00000514313	GPAM	Q9HCL2	828 aa		11.65	□□□□□ -0.54
NUP54-215	ENST00000514313	SOS2	Q07890	1332 aa	Predicted RBP	11.64	□□□□□ -0.55
NUP54-215	ENST00000514313	FAM187A	A6NFU0	413 aa		11.64	□□□□□ -0.55
NUP54-215	ENST00000514313	IRS1	P35568	1242 aa		11.64	□□□□□ -0.55
NUP54-215	ENST00000514313	ZNF76	P36508	570 aa		11.64	□□□□□ -0.55
NUP54-215	ENST00000514313	SCARF1	Q14162	830 aa		11.64	□□□□□ -0.55
NUP54-215	ENST00000514313	RNF34	Q969K3	372 aa		11.64	□□□□□ -0.55
NUP54-215	ENST00000514313	CCDC74A	Q96AQ1	378 aa		11.64	□□□□□ -0.55
NUP54-215	ENST00000514313	ELP3	Q9H9T3	547 aa		11.64	□□□□□ -0.55
NUP54-215	ENST00000514313	PHACTR2	O75167	634 aa		11.63	□□□□□ -0.55
NUP54-215	ENST00000514313	EIF4B	P23588	611 aa	Known RBP	11.63	□□□□□ -0.55
NUP54-215	ENST00000514313	TRIM46	Q7Z4K8	759 aa		11.63	□□□□□ -0.55
NUP54-215	ENST00000514313	CEP63	Q96MT8	703 aa		11.63	□□□□□ -0.55
NUP54-215	ENST00000514313	CRISPLD1	Q9H336	500 aa		11.63	□□□□□ -0.55
NUP54-215	ENST00000514313	RUBCNL	Q9H714	662 aa		11.63	□□□□□ -0.55
NUP54-215	ENST00000514313	ZFYVE28	Q9HCC9	887 aa		11.63	□□□□□ -0.55
NUP54-215	ENST00000514313	PDZRN3	Q9UPQ7	1066 aa		11.63	□□□□□ -0.55
NUP54-215	ENST00000514313	GJA3	Q9Y6H8	435 aa		11.63	□□□□□ -0.55
NUP54-215	ENST00000514313	AVP	P01185	164 aa		11.62	□□□□□ -0.55
NUP54-215	ENST00000514313	EPB42	P16452	691 aa		11.62	□□□□□ -0.55
NUP54-215	ENST00000514313	EPS8L3	Q8TE67	593 aa	Known RBP	11.62	□□□□□ -0.55
NUP54-215	ENST00000514313	C12orf49	Q9H741	205 aa		11.61	□□□□□ -0.55
NUP54-215	ENST00000514313	NPHS2	Q9NP85	383 aa		11.61	□□□□□ -0.55
NUP54-215	ENST00000514313	XYLB	O75191	536 aa		11.6	□□□□□ -0.55
NUP54-215	ENST00000514313	DRC1	Q96MC2	740 aa		11.6	□□□□□ -0.55
NUP54-215	ENST00000514313	OSBPL7	Q9BZF2	842 aa		11.6	□□□□□ -0.55
NUP54-215	ENST00000514313	CHRD	Q9H2X0	955 aa		11.6	□□□□□ -0.55
NUP54-215	ENST00000514313	POLR3D	P05423	398 aa	Predicted RBP	11.59	□□□□□ -0.55
NUP54-215	ENST00000514313	BRD7	Q9NPI1	651 aa		11.59	□□□□□ -0.55
NUP54-215	ENST00000514313	DNMT3L	Q9UJW3	386 aa		11.59	□□□□□ -0.55
NUP54-215	ENST00000514313	DYRK1B	Q9Y463	629 aa		11.59	□□□□□ -0.55
NUP54-215	ENST00000514313	SHROOM4	Q9ULL8	1493 aa		11.58	□□□□□ -0.56
NUP54-215	ENST00000514313	TGIF2	Q9GZN2	237 aa		11.58	□□□□□ -0.56
NUP54-215	ENST00000514313	NLRP2	Q9NX02	1062 aa		11.58	□□□□□ -0.56
NUP54-215	ENST00000514313	CNTN3	Q9P232	1028 aa		11.58	□□□□□ -0.56
NUP54-215	ENST00000514313	EREG	O14944	169 aa		11.57	□□□□□ -0.56
NUP54-215	ENST00000514313	EGFR	P00533	1210 aa		11.57	□□□□□ -0.56
NUP54-215	ENST00000514313	F11	P03951	625 aa		11.57	□□□□□ -0.56
NUP54-215	ENST00000514313	SAMD5	Q5TGI4	173 aa		11.57	□□□□□ -0.56
NUP54-215	ENST00000514313	C1orf127	Q8N9H9	656 aa		11.57	□□□□□ -0.56
NUP54-215	ENST00000514313	ZFP42	Q96MM3	310 aa		11.57	□□□□□ -0.56
NUP54-215	ENST00000514313	GAS2L1	Q99501	681 aa	Predicted RBP	11.57	□□□□□ -0.56
NUP54-215	ENST00000514313	TINF2	Q9BSI4	451 aa		11.57	□□□□□ -0.56
NUP54-215	ENST00000514313	ZCCHC2	Q9C0B9	1178 aa	Known RBP	11.57	□□□□□ -0.56
NUP54-215	ENST00000514313	ABI2	Q9NYB9	513 aa	Predicted RBP	11.57	□□□□□ -0.56

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