RNA–Protein interactions for RNA: ENST00000513989.5

NEDD9-214, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 4

Gene NEDD9, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-214ENST00000513989 PARP3Q9Y6F1 533 aa12.85□□□□□ -0.35
NEDD9-214ENST00000513989 PCNTO95613 3336 aa12.85□□□□□ -0.35
NEDD9-214ENST00000513989 COL15A1P39059 1388 aa12.84□□□□□ -0.35
NEDD9-214ENST00000513989 CCT4P50991 539 aaKnown RBP12.84□□□□□ -0.35
NEDD9-214ENST00000513989 RRP1P56182 461 aaKnown RBP12.84□□□□□ -0.35
NEDD9-214ENST00000513989 TCIRG1Q13488 830 aa12.84□□□□□ -0.35
NEDD9-214ENST00000513989 PDE3AQ14432 1141 aa12.84□□□□□ -0.35
NEDD9-214ENST00000513989 USPL1Q5W0Q7 1092 aa12.84□□□□□ -0.35
NEDD9-214ENST00000513989 METTL22Q9BUU2 404 aaPredicted RBP12.84□□□□□ -0.35
NEDD9-214ENST00000513989 ZBTB3Q9H5J0 574 aa12.84□□□□□ -0.35
NEDD9-214ENST00000513989 BCL2L12Q9HB09 334 aa12.84□□□□□ -0.35
NEDD9-214ENST00000513989 TIAM2Q8IVF5 1701 aa12.83□□□□□ -0.36
NEDD9-214ENST00000513989 PLIN1O60240 522 aa12.83□□□□□ -0.36
NEDD9-214ENST00000513989 CAMTA2O94983 1202 aa12.83□□□□□ -0.36
NEDD9-214ENST00000513989 TRIM27P14373 513 aa12.83□□□□□ -0.36
NEDD9-214ENST00000513989 CHRNA5P30532 468 aa12.83□□□□□ -0.36
NEDD9-214ENST00000513989 GIGYF2Q6Y7W6 1299 aaKnown RBP12.83□□□□□ -0.36
NEDD9-214ENST00000513989 HDAC5Q9UQL6 1122 aa12.83□□□□□ -0.36
NEDD9-214ENST00000513989 DICER1Q9UPY3 1922 aaKnown RBP12.83□□□□□ -0.36
NEDD9-214ENST00000513989 TNRC6CQ9HCJ0 1690 aaKnown RBP12.83□□□□□ -0.36
NEDD9-214ENST00000513989 F6X3S4 739 aa12.82□□□□□ -0.36
NEDD9-214ENST00000513989 CLUAP1Q96AJ1 413 aa12.82□□□□□ -0.36
NEDD9-214ENST00000513989 SETDB2Q96T68 719 aa12.82□□□□□ -0.36
NEDD9-214ENST00000513989 MYD88Q99836 296 aa12.82□□□□□ -0.36
NEDD9-214ENST00000513989 SRCIN1Q9C0H9 1055 aa12.82□□□□□ -0.36
NEDD9-214ENST00000513989 FER1L6Q2WGJ9 1857 aa12.82□□□□□ -0.36
NEDD9-214ENST00000513989 WDR90Q96KV7 1748 aa12.82□□□□□ -0.36
NEDD9-214ENST00000513989 CARMIL3Q8ND23 1372 aa12.81□□□□□ -0.36
NEDD9-214ENST00000513989 ALDH1L1O75891 902 aa12.81□□□□□ -0.36
NEDD9-214ENST00000513989 NEFLP07196 543 aa12.81□□□□□ -0.36
NEDD9-214ENST00000513989 TRIM28Q13263 835 aaKnown RBP12.81□□□□□ -0.36
NEDD9-214ENST00000513989 NFIXQ14938 502 aa12.81□□□□□ -0.36
NEDD9-214ENST00000513989 HLFQ16534 295 aa12.81□□□□□ -0.36
NEDD9-214ENST00000513989 PARP10Q53GL7 1025 aa12.81□□□□□ -0.36
NEDD9-214ENST00000513989 ARHGAP27Q6ZUM4 889 aa12.81□□□□□ -0.36
NEDD9-214ENST00000513989 LINS1Q8NG48 757 aa12.81□□□□□ -0.36
NEDD9-214ENST00000513989 ARFGEF2Q9Y6D5 1785 aa12.81□□□□□ -0.36
NEDD9-214ENST00000513989 NPHP1O15259 732 aa12.8□□□□□ -0.36
NEDD9-214ENST00000513989 HSP90B1P14625 803 aaKnown RBP12.8□□□□□ -0.36
NEDD9-214ENST00000513989 HSPA6P17066 643 aa12.8□□□□□ -0.36
NEDD9-214ENST00000513989 INTS3Q68E01 1043 aaKnown RBP12.8□□□□□ -0.36
NEDD9-214ENST00000513989 PPP1R42Q7Z4L9 355 aa12.8□□□□□ -0.36
NEDD9-214ENST00000513989 CCDC191Q8NCU4 936 aa12.8□□□□□ -0.36
NEDD9-214ENST00000513989 CWC25Q9NXE8 425 aaPredicted RBP12.8□□□□□ -0.36
NEDD9-214ENST00000513989 PIM2Q9P1W9 311 aa12.8□□□□□ -0.36
NEDD9-214ENST00000513989 NIP7Q9Y221 180 aaKnown RBP eCLIP12.8□□□□□ -0.36
NEDD9-214ENST00000513989 ATP5J2-PTCD1G3V325 749 aa12.79□□□□□ -0.36
NEDD9-214ENST00000513989 GTF2E1P29083 439 aaPredicted RBP12.79□□□□□ -0.36
NEDD9-214ENST00000513989 BEND3Q5T5X7 828 aa12.79□□□□□ -0.36
NEDD9-214ENST00000513989 TPTE2Q6XPS3 522 aa12.79□□□□□ -0.36
NEDD9-214ENST00000513989 ITPRIPQ8IWB1 547 aa12.79□□□□□ -0.36
NEDD9-214ENST00000513989 ZNF34Q8IZ26 560 aa12.79□□□□□ -0.36
NEDD9-214ENST00000513989 NYXQ9GZU5 481 aa12.79□□□□□ -0.36
NEDD9-214ENST00000513989 NMRK2Q9NPI5 230 aa12.79□□□□□ -0.36
NEDD9-214ENST00000513989 C9orf78Q9NZ63 289 aaPredicted RBP12.79□□□□□ -0.36
NEDD9-214ENST00000513989 RNF123Q5XPI4 1314 aa12.79□□□□□ -0.36
NEDD9-214ENST00000513989 PRELPP51888 382 aa12.78□□□□□ -0.36
NEDD9-214ENST00000513989 DALRD3Q5D0E6 543 aaKnown RBP12.78□□□□□ -0.36
NEDD9-214ENST00000513989 C9orf131Q5VYM1 1079 aa12.78□□□□□ -0.36
NEDD9-214ENST00000513989 BICDL1Q6ZP65 573 aa12.78□□□□□ -0.36
NEDD9-214ENST00000513989 TMEM57Q8N5G2 664 aa12.78□□□□□ -0.36
NEDD9-214ENST00000513989 PANK1Q8TE04 598 aa12.78□□□□□ -0.36
NEDD9-214ENST00000513989 ISCA1Q9BUE6 129 aa12.78□□□□□ -0.36
NEDD9-214ENST00000513989 UTP14AQ9BVJ6 771 aaKnown RBP12.78□□□□□ -0.36
NEDD9-214ENST00000513989 SLX4Q8IY92 1834 aa12.78□□□□□ -0.36
NEDD9-214ENST00000513989 LAMB4A4D0S4 1761 aa12.77□□□□□ -0.36
NEDD9-214ENST00000513989 NEURL1BA8MQ27 555 aa12.77□□□□□ -0.37
NEDD9-214ENST00000513989 GNAI3P08754 354 aa12.77□□□□□ -0.37
NEDD9-214ENST00000513989 GPTP24298 496 aa12.77□□□□□ -0.37
NEDD9-214ENST00000513989 GCKRQ14397 625 aa12.77□□□□□ -0.37
NEDD9-214ENST00000513989 TBC1D9BQ66K14 1250 aa12.77□□□□□ -0.37
NEDD9-214ENST00000513989 NBPF5PQ86XG9 351 aaPredicted RBP12.77□□□□□ -0.37
NEDD9-214ENST00000513989 TRMT112Q9UI30 125 aaKnown RBP12.77□□□□□ -0.37
NEDD9-214ENST00000513989 DDX19BQ9UMR2 479 aa12.77□□□□□ -0.37
NEDD9-214ENST00000513989 ABCC4O15439 1325 aa12.77□□□□□ -0.37
NEDD9-214ENST00000513989 IGKV5-2P06315 115 aa12.76□□□□□ -0.37
NEDD9-214ENST00000513989 AAMPQ13685 434 aa12.76□□□□□ -0.37
NEDD9-214ENST00000513989 MVPQ14764 893 aaKnown RBP12.76□□□□□ -0.37
NEDD9-214ENST00000513989 NLRP10Q86W26 655 aa12.76□□□□□ -0.37
NEDD9-214ENST00000513989 SERPINB2P05120 415 aa12.75□□□□□ -0.37
NEDD9-214ENST00000513989 RASSF7Q02833 373 aa12.75□□□□□ -0.37
NEDD9-214ENST00000513989 CWF19L2Q2TBE0 894 aaKnown RBP12.75□□□□□ -0.37
NEDD9-214ENST00000513989 ZBTB38Q8NAP3 1195 aaPredicted RBP12.75□□□□□ -0.37
NEDD9-214ENST00000513989 COG6Q9Y2V7 657 aa12.75□□□□□ -0.37
NEDD9-214ENST00000513989 FAM177BA6PVY3 158 aa12.74□□□□□ -0.37
NEDD9-214ENST00000513989 GRM8O00222 908 aa12.74□□□□□ -0.37
NEDD9-214ENST00000513989 TOMM70O94826 608 aa12.74□□□□□ -0.37
NEDD9-214ENST00000513989 PCCAP05165 728 aaPredicted RBP12.74□□□□□ -0.37
NEDD9-214ENST00000513989 RLBP1P12271 317 aa12.74□□□□□ -0.37
NEDD9-214ENST00000513989 ST5P78524 1137 aa12.74□□□□□ -0.37
NEDD9-214ENST00000513989 C20orf194Q5TEA3 1177 aa12.74□□□□□ -0.37
NEDD9-214ENST00000513989 SUSD4Q5VX71 490 aa12.74□□□□□ -0.37
NEDD9-214ENST00000513989 RNF181Q9P0P0 153 aa12.74□□□□□ -0.37
NEDD9-214ENST00000513989 NUP98P52948 1817 aa12.74□□□□□ -0.37
NEDD9-214ENST00000513989 IBTKQ9P2D0 1353 aaPredicted RBP12.73□□□□□ -0.37
NEDD9-214ENST00000513989 SH3TC1Q8TE82 1336 aa12.73□□□□□ -0.37
NEDD9-214ENST00000513989 H7C1W4 665 aa12.73□□□□□ -0.37
NEDD9-214ENST00000513989 ZBTB7BO15156 539 aaPredicted RBP12.73□□□□□ -0.37
NEDD9-214ENST00000513989 UBTFL1P0CB47 393 aaPredicted RBP12.73□□□□□ -0.37
NEDD9-214ENST00000513989 CNBD1Q8NA66 436 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms