RNA–Protein interactions for RNA: ENST00000510171.3

DDX41-211, Transcript of DEAD-box helicase 41, human

TSL 3

Gene DDX41, Length 569 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-211	ENST00000510171	SUSD4	Q5VX71	490 aa		13.78	□□□□□ -0.2
DDX41-211	ENST00000510171	LARGE2	Q8N3Y3	721 aa		13.78	□□□□□ -0.2
DDX41-211	ENST00000510171	RBM17	Q96I25	401 aa	Known RBP	13.78	□□□□□ -0.2
DDX41-211	ENST00000510171	ABT1	Q9ULW3	272 aa	Known RBP	13.78	□□□□□ -0.2
DDX41-211	ENST00000510171	VIRMA	Q69YN4	1812 aa	Known RBP	13.78	□□□□□ -0.2
DDX41-211	ENST00000510171	CCDC88A	Q3V6T2	1871 aa		13.78	□□□□□ -0.2
DDX41-211	ENST00000510171	LBX1	P52954	281 aa		13.77	□□□□□ -0.21
DDX41-211	ENST00000510171	ABCC12	Q96J65	1359 aa		13.77	□□□□□ -0.21
DDX41-211	ENST00000510171	CRAMP1	Q96RY5	1269 aa		13.77	□□□□□ -0.21
DDX41-211	ENST00000510171	ZBTB3	Q9H5J0	574 aa		13.77	□□□□□ -0.21
DDX41-211	ENST00000510171	WDR33	Q9C0J8	1336 aa	Known RBP	13.76	□□□□□ -0.21
DDX41-211	ENST00000510171	TCERG1	O14776	1098 aa	Known RBP	13.76	□□□□□ -0.21
DDX41-211	ENST00000510171	PPEF1	O14829	653 aa	Predicted RBP	13.76	□□□□□ -0.21
DDX41-211	ENST00000510171	MAP2K1	Q02750	393 aa	Predicted RBP	13.76	□□□□□ -0.21
DDX41-211	ENST00000510171	PPP1R42	Q7Z4L9	355 aa		13.76	□□□□□ -0.21
DDX41-211	ENST00000510171	ZNF34	Q8IZ26	560 aa		13.76	□□□□□ -0.21
DDX41-211	ENST00000510171	PLEKHF1	Q96S99	279 aa		13.76	□□□□□ -0.21
DDX41-211	ENST00000510171	THUMPD2	Q9BTF0	503 aa	Known RBP	13.76	□□□□□ -0.21
DDX41-211	ENST00000510171	TMX4	Q9H1E5	349 aa	Predicted RBP	13.76	□□□□□ -0.21
DDX41-211	ENST00000510171	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.76	□□□□□ -0.21
DDX41-211	ENST00000510171	DICER1	Q9UPY3	1922 aa	Known RBP	13.76	□□□□□ -0.21
DDX41-211	ENST00000510171	PCNT	O95613	3336 aa		13.75	□□□□□ -0.21
DDX41-211	ENST00000510171	UBN2	Q6ZU65	1347 aa		13.75	□□□□□ -0.21
DDX41-211	ENST00000510171	EPS15	P42566	896 aa		13.75	□□□□□ -0.21
DDX41-211	ENST00000510171	NFE2L2	Q16236	605 aa		13.75	□□□□□ -0.21
DDX41-211	ENST00000510171	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.75	□□□□□ -0.21
DDX41-211	ENST00000510171	NIM1K	Q8IY84	436 aa		13.75	□□□□□ -0.21
DDX41-211	ENST00000510171	NLRP3	Q96P20	1036 aa		13.75	□□□□□ -0.21
DDX41-211	ENST00000510171	PNN	Q9H307	717 aa	Known RBP	13.75	□□□□□ -0.21
DDX41-211	ENST00000510171	BCOR	Q6W2J9	1755 aa		13.75	□□□□□ -0.21
DDX41-211	ENST00000510171	SNED1	Q8TER0	1413 aa		13.74	□□□□□ -0.21
DDX41-211	ENST00000510171	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.74	□□□□□ -0.21
DDX41-211	ENST00000510171	NTSR2	O95665	410 aa		13.74	□□□□□ -0.21
DDX41-211	ENST00000510171	SCNN1D	P51172	638 aa		13.74	□□□□□ -0.21
DDX41-211	ENST00000510171	PARP10	Q53GL7	1025 aa		13.74	□□□□□ -0.21
DDX41-211	ENST00000510171	USP50	Q70EL3	339 aa	Predicted RBP	13.74	□□□□□ -0.21
DDX41-211	ENST00000510171	ERBB4	Q15303	1308 aa		13.73	□□□□□ -0.21
DDX41-211	ENST00000510171	PPIP5K2	O43314	1243 aa		13.73	□□□□□ -0.21
DDX41-211	ENST00000510171	HSPA8	P11142	646 aa	Known RBP	13.73	□□□□□ -0.21
DDX41-211	ENST00000510171	UTP14A	Q9BVJ6	771 aa	Known RBP	13.73	□□□□□ -0.21
DDX41-211	ENST00000510171	VPS33B	Q9H267	617 aa		13.73	□□□□□ -0.21
DDX41-211	ENST00000510171	SCN4A	P35499	1836 aa		13.73	□□□□□ -0.21
DDX41-211	ENST00000510171	MAPK8IP3	Q9UPT6	1336 aa		13.72	□□□□□ -0.21
DDX41-211	ENST00000510171	EIF2S2	P20042	333 aa	Known RBP	13.72	□□□□□ -0.21
DDX41-211	ENST00000510171	ECE1	P42892	770 aa		13.72	□□□□□ -0.21
DDX41-211	ENST00000510171	SLC10A5	Q5PT55	438 aa		13.72	□□□□□ -0.21
DDX41-211	ENST00000510171	C3orf67	Q6ZVT6	689 aa		13.72	□□□□□ -0.21
DDX41-211	ENST00000510171	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.72	□□□□□ -0.21
DDX41-211	ENST00000510171	TSPYL4	Q9UJ04	414 aa		13.72	□□□□□ -0.21
DDX41-211	ENST00000510171	ATP6V0A2	Q9Y487	856 aa		13.72	□□□□□ -0.21
DDX41-211	ENST00000510171	RIC1	Q4ADV7	1423 aa		13.72	□□□□□ -0.21
DDX41-211	ENST00000510171	ARFGEF2	Q9Y6D5	1785 aa		13.71	□□□□□ -0.21
DDX41-211	ENST00000510171	FMR1	Q06787	632 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
DDX41-211	ENST00000510171	AOC3	Q16853	763 aa		13.71	□□□□□ -0.21
DDX41-211	ENST00000510171	CST9	Q5W186	159 aa		13.71	□□□□□ -0.21
DDX41-211	ENST00000510171	SLC51A	Q86UW1	340 aa		13.71	□□□□□ -0.21
DDX41-211	ENST00000510171	SUPT20H	Q8NEM7	779 aa		13.71	□□□□□ -0.21
DDX41-211	ENST00000510171	CAPNS2	Q96L46	248 aa		13.71	□□□□□ -0.21
DDX41-211	ENST00000510171	BEGAIN	Q9BUH8	593 aa		13.71	□□□□□ -0.21
DDX41-211	ENST00000510171	ADARB2	Q9NS39	739 aa	Known RBP	13.71	□□□□□ -0.21
DDX41-211	ENST00000510171	TRAF5	O00463	557 aa		13.7	□□□□□ -0.22
DDX41-211	ENST00000510171	BBOX1	O75936	387 aa		13.7	□□□□□ -0.22
DDX41-211	ENST00000510171	GRM1	Q13255	1194 aa		13.7	□□□□□ -0.22
DDX41-211	ENST00000510171	CYP4F22	Q6NT55	531 aa		13.7	□□□□□ -0.22
DDX41-211	ENST00000510171	GPR101	Q96P66	508 aa	Predicted RBP	13.7	□□□□□ -0.22
DDX41-211	ENST00000510171	GPRC5D	Q9NZD1	345 aa		13.7	□□□□□ -0.22
DDX41-211	ENST00000510171	ZNRF3	Q9ULT6	936 aa		13.7	□□□□□ -0.22
DDX41-211	ENST00000510171	CXCL9	Q07325	125 aa		13.69	□□□□□ -0.22
DDX41-211	ENST00000510171	PDIA6	Q15084	440 aa		13.69	□□□□□ -0.22
DDX41-211	ENST00000510171	LRP10	Q7Z4F1	713 aa		13.69	□□□□□ -0.22
DDX41-211	ENST00000510171	SP8	Q8IXZ3	490 aa		13.69	□□□□□ -0.22
DDX41-211	ENST00000510171	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.69	□□□□□ -0.22
DDX41-211	ENST00000510171	TLL2	Q9Y6L7	1015 aa		13.69	□□□□□ -0.22
DDX41-211	ENST00000510171	COL4A5	P29400	1685 aa		13.69	□□□□□ -0.22
DDX41-211	ENST00000510171	ABCC4	O15439	1325 aa		13.68	□□□□□ -0.22
DDX41-211	ENST00000510171	RIPK4	P57078	832 aa		13.68	□□□□□ -0.22
DDX41-211	ENST00000510171	HSP90AB3P	Q58FF7	597 aa		13.68	□□□□□ -0.22
DDX41-211	ENST00000510171	DPP8	Q6V1X1	898 aa	Predicted RBP	13.68	□□□□□ -0.22
DDX41-211	ENST00000510171	MPND	Q8N594	471 aa		13.68	□□□□□ -0.22
DDX41-211	ENST00000510171	ABHD8	Q96I13	439 aa		13.68	□□□□□ -0.22
DDX41-211	ENST00000510171	BABAM1	Q9NWV8	329 aa		13.68	□□□□□ -0.22
DDX41-211	ENST00000510171	ADAMTSL1	Q8N6G6	1762 aa		13.68	□□□□□ -0.22
DDX41-211	ENST00000510171	ANXA1	P04083	346 aa		13.67	□□□□□ -0.22
DDX41-211	ENST00000510171	HCLS1	P14317	486 aa	Predicted RBP	13.67	□□□□□ -0.22
DDX41-211	ENST00000510171	MAP2K2	P36507	400 aa		13.67	□□□□□ -0.22
DDX41-211	ENST00000510171	GMPS	P49915	693 aa	Predicted RBP	13.67	□□□□□ -0.22
DDX41-211	ENST00000510171	AIMP1	Q12904	312 aa	Known RBP	13.67	□□□□□ -0.22
DDX41-211	ENST00000510171	TNIP1	Q15025	636 aa		13.67	□□□□□ -0.22
DDX41-211	ENST00000510171	PROSER3	Q2NL68	480 aa		13.67	□□□□□ -0.22
DDX41-211	ENST00000510171	CIAPIN1	Q6FI81	312 aa		13.67	□□□□□ -0.22
DDX41-211	ENST00000510171	COPS6	Q7L5N1	327 aa		13.67	□□□□□ -0.22
DDX41-211	ENST00000510171	CACNA1S	Q13698	1873 aa		13.67	□□□□□ -0.22
DDX41-211	ENST00000510171	CELF2	O95319	508 aa	Known RBP	13.66	□□□□□ -0.22
DDX41-211	ENST00000510171	KIAA2012	Q0VF49	1180 aa		13.66	□□□□□ -0.22
DDX41-211	ENST00000510171	DDX46	Q7L014	1031 aa	Known RBP	13.66	□□□□□ -0.22
DDX41-211	ENST00000510171	NLRP10	Q86W26	655 aa		13.66	□□□□□ -0.22
DDX41-211	ENST00000510171	ZC3H15	Q8WU90	426 aa	Known RBP	13.66	□□□□□ -0.22
DDX41-211	ENST00000510171	NECTIN2	Q92692	538 aa		13.66	□□□□□ -0.22
DDX41-211	ENST00000510171	BCL2L13	Q9BXK5	485 aa		13.66	□□□□□ -0.22
DDX41-211	ENST00000510171	RAD17	O75943	681 aa		13.65	□□□□□ -0.22

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