RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 NUTM1Q86Y26 1132 aa15.08■□□□□ 0
CUX1-210ENST00000497815 FTSJ3Q8IY81 847 aaKnown RBP15.08■□□□□ 0
CUX1-210ENST00000497815 KLHL34Q8N239 644 aa15.08■□□□□ 0
CUX1-210ENST00000497815 CNBD1Q8NA66 436 aa15.08■□□□□ 0
CUX1-210ENST00000497815 LINS1Q8NG48 757 aa15.08■□□□□ 0
CUX1-210ENST00000497815 JARID2Q92833 1246 aaPredicted RBP15.08■□□□□ 0
CUX1-210ENST00000497815 SGIP1Q9BQI5 828 aa15.08■□□□□ 0
CUX1-210ENST00000497815 UTP14AQ9BVJ6 771 aaKnown RBP15.08■□□□□ 0
CUX1-210ENST00000497815 SRCIN1Q9C0H9 1055 aa15.08■□□□□ 0
CUX1-210ENST00000497815 CWC25Q9NXE8 425 aaPredicted RBP15.08■□□□□ 0
CUX1-210ENST00000497815 TRMT112Q9UI30 125 aaKnown RBP15.08■□□□□ 0
CUX1-210ENST00000497815 TPTE2Q6XPS3 522 aa15.07■□□□□ 0
CUX1-210ENST00000497815 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.07■□□□□ 0
CUX1-210ENST00000497815 CCDC191Q8NCU4 936 aa15.07■□□□□ 0
CUX1-210ENST00000497815 PPP1R1BQ9UD71 204 aaPredicted RBP15.07■□□□□ 0
CUX1-210ENST00000497815 COL24A1Q17RW2 1714 aa15.06■□□□□ 0
CUX1-210ENST00000497815 NTSR2O95665 410 aa15.06■□□□□ 0
CUX1-210ENST00000497815 TRIM28Q13263 835 aaKnown RBP15.06■□□□□ 0
CUX1-210ENST00000497815 ERFEQ4G0M1 354 aa15.06■□□□□ 0
CUX1-210ENST00000497815 PRR5LQ6MZQ0 368 aa15.06■□□□□ 0
CUX1-210ENST00000497815 DZIP1LQ8IYY4 767 aaKnown RBP15.06■□□□□ 0
CUX1-210ENST00000497815 SYNE4Q8N205 404 aa15.06■□□□□ 0
CUX1-210ENST00000497815 PANK1Q8TE04 598 aa15.06■□□□□ 0
CUX1-210ENST00000497815 FAM89AQ96GI7 184 aa15.06■□□□□ 0
CUX1-210ENST00000497815 NYXQ9GZU5 481 aa15.06■□□□□ 0
CUX1-210ENST00000497815 ABCC4O15439 1325 aa15.06■□□□□ 0
CUX1-210ENST00000497815 PXDNLA1KZ92 1463 aa15.06■□□□□ 0
CUX1-210ENST00000497815 CCT4P50991 539 aaKnown RBP15.05■□□□□ -0
CUX1-210ENST00000497815 RRP1P56182 461 aaKnown RBP15.05■□□□□ -0
CUX1-210ENST00000497815 ST5P78524 1137 aa15.05■□□□□ -0
CUX1-210ENST00000497815 GCKRQ14397 625 aa15.05■□□□□ -0
CUX1-210ENST00000497815 TMEM57Q8N5G2 664 aa15.05■□□□□ -0
CUX1-210ENST00000497815 AFDNP55196 1824 aaKnown RBP15.04■□□□□ -0
CUX1-210ENST00000497815 SH3TC1Q8TE82 1336 aa15.04■□□□□ -0
CUX1-210ENST00000497815 ALDH1L1O75891 902 aa15.04■□□□□ -0
CUX1-210ENST00000497815 CENPBP07199 599 aaPredicted RBP15.04■□□□□ -0
CUX1-210ENST00000497815 RLBP1P12271 317 aa15.04■□□□□ -0
CUX1-210ENST00000497815 RNF216Q9NWF9 866 aaPredicted RBP15.04■□□□□ -0
CUX1-210ENST00000497815 SUPT16HQ9Y5B9 1047 aaKnown RBP15.04■□□□□ -0
CUX1-210ENST00000497815 ABCC12Q96J65 1359 aa15.03■□□□□ -0
CUX1-210ENST00000497815 IBTKQ9P2D0 1353 aaPredicted RBP15.03■□□□□ -0
CUX1-210ENST00000497815 HCLS1P14317 486 aaPredicted RBP15.03■□□□□ -0
CUX1-210ENST00000497815 C20orf194Q5TEA3 1177 aa15.03■□□□□ -0
CUX1-210ENST00000497815 INTS3Q68E01 1043 aaKnown RBP15.03■□□□□ -0
CUX1-210ENST00000497815 UBE3BQ7Z3V4 1068 aa15.03■□□□□ -0
CUX1-210ENST00000497815 ITPRIPQ8IWB1 547 aa15.03■□□□□ -0
CUX1-210ENST00000497815 ZBTB38Q8NAP3 1195 aaPredicted RBP15.03■□□□□ -0
CUX1-210ENST00000497815 C9orf78Q9NZ63 289 aaPredicted RBP15.03■□□□□ -0
CUX1-210ENST00000497815 PCCAP05165 728 aaPredicted RBP15.02■□□□□ -0
CUX1-210ENST00000497815 MS4A1P11836 297 aa15.02■□□□□ -0
CUX1-210ENST00000497815 NRXN2Q9P2S2 1712 aa15.02□□□□□ -0.01
CUX1-210ENST00000497815 C10orf71Q711Q0 1435 aa15.01□□□□□ -0.01
CUX1-210ENST00000497815 GRM8O00222 908 aa15.01□□□□□ -0.01
CUX1-210ENST00000497815 IRS4O14654 1257 aaPredicted RBP15.01□□□□□ -0.01
CUX1-210ENST00000497815 COG6Q9Y2V7 657 aa15.01□□□□□ -0.01
CUX1-210ENST00000497815 RNF123Q5XPI4 1314 aa15□□□□□ -0.01
CUX1-210ENST00000497815 H7C1W4 665 aa15□□□□□ -0.01
CUX1-210ENST00000497815 NBPF7P0C2Y1 421 aaPredicted RBP15□□□□□ -0.01
CUX1-210ENST00000497815 BRIP1Q9BX63 1249 aa15□□□□□ -0.01
CUX1-210ENST00000497815 FHDC1Q9C0D6 1143 aaPredicted RBP15□□□□□ -0.01
CUX1-210ENST00000497815 LRP5O75197 1615 aa14.99□□□□□ -0.01
CUX1-210ENST00000497815 PDE3AQ14432 1141 aa14.99□□□□□ -0.01
CUX1-210ENST00000497815 C3orf67Q6ZVT6 689 aa14.99□□□□□ -0.01
CUX1-210ENST00000497815 MEIS3Q99687 375 aa14.99□□□□□ -0.01
CUX1-210ENST00000497815 USP44Q9H0E7 712 aa14.99□□□□□ -0.01
CUX1-210ENST00000497815 TNRC6CQ9HCJ0 1690 aaKnown RBP14.99□□□□□ -0.01
CUX1-210ENST00000497815 N4BP2Q86UW6 1770 aaPredicted RBP14.98□□□□□ -0.01
CUX1-210ENST00000497815 CDHR2Q9BYE9 1310 aa14.98□□□□□ -0.01
CUX1-210ENST00000497815 CHRNA5P30532 468 aa14.98□□□□□ -0.01
CUX1-210ENST00000497815 PDE6BP35913 854 aa14.98□□□□□ -0.01
CUX1-210ENST00000497815 CASP7P55210 303 aa14.98□□□□□ -0.01
CUX1-210ENST00000497815 SLC10A5Q5PT55 438 aa14.98□□□□□ -0.01
CUX1-210ENST00000497815 C2CD5Q86YS7 1000 aa14.98□□□□□ -0.01
CUX1-210ENST00000497815 NLRP3Q96P20 1036 aa14.98□□□□□ -0.01
CUX1-210ENST00000497815 CD2APQ9Y5K6 639 aa14.98□□□□□ -0.01
CUX1-210ENST00000497815 A0A0G2JLW4 131 aa14.97□□□□□ -0.01
CUX1-210ENST00000497815 UBTFL1P0CB47 393 aaPredicted RBP14.97□□□□□ -0.01
CUX1-210ENST00000497815 MVPQ14764 893 aaKnown RBP14.97□□□□□ -0.01
CUX1-210ENST00000497815 NLGN2Q8NFZ4 835 aa14.97□□□□□ -0.01
CUX1-210ENST00000497815 SUCLG2Q96I99 432 aa14.97□□□□□ -0.01
CUX1-210ENST00000497815 CCDC85AQ96PX6 553 aaPredicted RBP14.97□□□□□ -0.01
CUX1-210ENST00000497815 RNF39Q9H2S5 420 aa14.97□□□□□ -0.01
CUX1-210ENST00000497815 UTYO14607 1347 aa14.96□□□□□ -0.01
CUX1-210ENST00000497815 H0YIN7 160 aa14.96□□□□□ -0.01
CUX1-210ENST00000497815 PDE8AO60658 829 aa14.96□□□□□ -0.01
CUX1-210ENST00000497815 HSP90B1P14625 803 aaKnown RBP14.96□□□□□ -0.01
CUX1-210ENST00000497815 DPEP1P16444 411 aa14.96□□□□□ -0.01
CUX1-210ENST00000497815 IRX6P78412 446 aaPredicted RBP14.96□□□□□ -0.01
CUX1-210ENST00000497815 DDX60Q8IY21 1712 aaKnown RBP14.96□□□□□ -0.01
CUX1-210ENST00000497815 ANKRD31Q8N7Z5 1873 aa14.96□□□□□ -0.01
CUX1-210ENST00000497815 WWC3Q9ULE0 1092 aa14.96□□□□□ -0.01
CUX1-210ENST00000497815 RIC1Q4ADV7 1423 aa14.95□□□□□ -0.02
CUX1-210ENST00000497815 GNAI3P08754 354 aa14.95□□□□□ -0.02
CUX1-210ENST00000497815 CTSWP56202 376 aa14.95□□□□□ -0.02
CUX1-210ENST00000497815 EPHA10Q5JZY3 1008 aa14.95□□□□□ -0.02
CUX1-210ENST00000497815 RPGRQ92834 1020 aaKnown RBP14.95□□□□□ -0.02
CUX1-210ENST00000497815 SYT17Q9BSW7 474 aa14.95□□□□□ -0.02
CUX1-210ENST00000497815 ZBTB7BO15156 539 aaPredicted RBP14.94□□□□□ -0.02
CUX1-210ENST00000497815 TGFB2P61812 414 aa14.94□□□□□ -0.02
CUX1-210ENST00000497815 FOXO4P98177 505 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms