RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 COL4A5P29400 1685 aa18.6■□□□□ 0.57
VARS-227ENST00000489979 EIF6P56537 245 aaKnown RBP18.6■□□□□ 0.57
VARS-227ENST00000489979 LTBP1Q14766 1721 aa18.6■□□□□ 0.57
VARS-227ENST00000489979 CC2D2BQ6DHV5 1058 aa18.59■□□□□ 0.57
VARS-227ENST00000489979 DDX21Q9NR30 783 aaKnown RBP eCLIP18.59■□□□□ 0.57
VARS-227ENST00000489979 ERVV-1B6SEH8 477 aa18.58■□□□□ 0.56
VARS-227ENST00000489979 LMOD1P29536 600 aaPredicted RBP18.58■□□□□ 0.56
VARS-227ENST00000489979 PPP2R1AP30153 589 aa18.58■□□□□ 0.56
VARS-227ENST00000489979 MAP2K1Q02750 393 aaPredicted RBP18.58■□□□□ 0.56
VARS-227ENST00000489979 RPGRQ92834 1020 aaKnown RBP18.58■□□□□ 0.56
VARS-227ENST00000489979 FMR1Q06787 632 aaKnown RBP eCLIP18.57■□□□□ 0.566e-8■■■■■ 33.4
VARS-227ENST00000489979 TTLL7Q6ZT98 887 aa18.57■□□□□ 0.56
VARS-227ENST00000489979 LARGE2Q8N3Y3 721 aa18.57■□□□□ 0.56
VARS-227ENST00000489979 MAP3K15Q6ZN16 1313 aa18.56■□□□□ 0.56
VARS-227ENST00000489979 GPTP24298 496 aa18.56■□□□□ 0.56
VARS-227ENST00000489979 HOXA10P31260 410 aaPredicted RBP18.56■□□□□ 0.56
VARS-227ENST00000489979 EPS15P42566 896 aa18.56■□□□□ 0.56
VARS-227ENST00000489979 SCNN1DP51172 638 aa18.56■□□□□ 0.56
VARS-227ENST00000489979 KIF6Q6ZMV9 814 aa18.56■□□□□ 0.56
VARS-227ENST00000489979 SLC51AQ86UW1 340 aa18.56■□□□□ 0.56
VARS-227ENST00000489979 ABHD8Q96I13 439 aa18.56■□□□□ 0.56
VARS-227ENST00000489979 RRP7AQ9Y3A4 280 aaKnown RBP18.56■□□□□ 0.56
VARS-227ENST00000489979 TRPM7Q96QT4 1865 aa18.55■□□□□ 0.56
VARS-227ENST00000489979 TCERG1O14776 1098 aaKnown RBP18.55■□□□□ 0.56
VARS-227ENST00000489979 PAXIP1Q6ZW49 1069 aaPredicted RBP18.55■□□□□ 0.56
VARS-227ENST00000489979 KDM3BQ7LBC6 1761 aa18.55■□□□□ 0.56
VARS-227ENST00000489979 DLG5Q8TDM6 1919 aa18.55■□□□□ 0.56
VARS-227ENST00000489979 UBN2Q6ZU65 1347 aa18.54■□□□□ 0.56
VARS-227ENST00000489979 GRIPAP1Q4V328 841 aa18.54■□□□□ 0.56
VARS-227ENST00000489979 SUSD4Q5VX71 490 aa18.54■□□□□ 0.56
VARS-227ENST00000489979 RBM17Q96I25 401 aaKnown RBP18.54■□□□□ 0.56
VARS-227ENST00000489979 CAPNS2Q96L46 248 aa18.54■□□□□ 0.56
VARS-227ENST00000489979 ZBTB3Q9H5J0 574 aa18.54■□□□□ 0.56
VARS-227ENST00000489979 RIC1Q4ADV7 1423 aa18.54■□□□□ 0.56
VARS-227ENST00000489979 IBTKQ9P2D0 1353 aaPredicted RBP18.54■□□□□ 0.56
VARS-227ENST00000489979 PPEF1O14829 653 aaPredicted RBP18.53■□□□□ 0.56
VARS-227ENST00000489979 MYL6BP14649 208 aa18.53■□□□□ 0.56
VARS-227ENST00000489979 GRM1Q13255 1194 aa18.53■□□□□ 0.56
VARS-227ENST00000489979 CYP4F22Q6NT55 531 aa18.53■□□□□ 0.56
VARS-227ENST00000489979 USP50Q70EL3 339 aaPredicted RBP18.53■□□□□ 0.56
VARS-227ENST00000489979 PNISRQ8TF01 805 aaKnown RBP18.53■□□□□ 0.56
VARS-227ENST00000489979 CRAMP1Q96RY5 1269 aa18.53■□□□□ 0.56
VARS-227ENST00000489979 THSD7BQ9C0I4 1608 aa18.52■□□□□ 0.56
VARS-227ENST00000489979 TRAF5O00463 557 aa18.52■□□□□ 0.56
VARS-227ENST00000489979 ECE1P42892 770 aa18.52■□□□□ 0.56
VARS-227ENST00000489979 EIF4A1P60842 406 aaKnown RBP18.52■□□□□ 0.56
VARS-227ENST00000489979 CST9Q5W186 159 aa18.52■□□□□ 0.56
VARS-227ENST00000489979 C3orf67Q6ZVT6 689 aa18.52■□□□□ 0.56
VARS-227ENST00000489979 NIM1KQ8IY84 436 aa18.52■□□□□ 0.56
VARS-227ENST00000489979 PPIP5K2O43314 1243 aa18.51■□□□□ 0.55
VARS-227ENST00000489979 NTSR2O95665 410 aa18.51■□□□□ 0.55
VARS-227ENST00000489979 ZNF34Q8IZ26 560 aa18.51■□□□□ 0.55
VARS-227ENST00000489979 GPR101Q96P66 508 aaPredicted RBP18.51■□□□□ 0.55
VARS-227ENST00000489979 BEGAINQ9BUH8 593 aa18.51■□□□□ 0.55
VARS-227ENST00000489979 TLL2Q9Y6L7 1015 aa18.5■□□□□ 0.55
VARS-227ENST00000489979 NEFMP07197 916 aa18.49■□□□□ 0.55
VARS-227ENST00000489979 AOC3Q16853 763 aa18.49■□□□□ 0.55
VARS-227ENST00000489979 FAM161AQ3B820 660 aa18.49■□□□□ 0.55
VARS-227ENST00000489979 THUMPD2Q9BTF0 503 aaKnown RBP18.49■□□□□ 0.55
VARS-227ENST00000489979 GIGYF2Q6Y7W6 1299 aaKnown RBP18.48■□□□□ 0.55
VARS-227ENST00000489979 PPP1R42Q7Z4L9 355 aa18.48■□□□□ 0.55
VARS-227ENST00000489979 NLRP3Q96P20 1036 aa18.48■□□□□ 0.55
VARS-227ENST00000489979 ADARB2Q9NS39 739 aaKnown RBP18.48■□□□□ 0.55
VARS-227ENST00000489979 GPRC5DQ9NZD1 345 aa18.48■□□□□ 0.55
VARS-227ENST00000489979 AOC2O75106 756 aa18.47■□□□□ 0.55
VARS-227ENST00000489979 TMX4Q9H1E5 349 aaPredicted RBP18.47■□□□□ 0.55
VARS-227ENST00000489979 TSKSQ9UJT2 592 aa18.47■□□□□ 0.55
VARS-227ENST00000489979 ATP6V0A2Q9Y487 856 aa18.47■□□□□ 0.55
VARS-227ENST00000489979 CCDC85CA6NKD9 419 aa18.46■□□□□ 0.55
VARS-227ENST00000489979 CXCL9Q07325 125 aa18.46■□□□□ 0.55
VARS-227ENST00000489979 PARP10Q53GL7 1025 aa18.46■□□□□ 0.55
VARS-227ENST00000489979 VPS33BQ9H267 617 aa18.46■□□□□ 0.55
VARS-227ENST00000489979 CELF2O95319 508 aaKnown RBP18.45■□□□□ 0.54
VARS-227ENST00000489979 MAP2K2P36507 400 aa18.45■□□□□ 0.54
VARS-227ENST00000489979 GMPSP49915 693 aaPredicted RBP18.45■□□□□ 0.54
VARS-227ENST00000489979 NFE2L2Q16236 605 aa18.45■□□□□ 0.54
VARS-227ENST00000489979 PLEKHF1Q96S99 279 aa18.45■□□□□ 0.54
VARS-227ENST00000489979 UTP14AQ9BVJ6 771 aaKnown RBP18.45■□□□□ 0.54
VARS-227ENST00000489979 ZNRF3Q9ULT6 936 aa18.45■□□□□ 0.54
VARS-227ENST00000489979 ABCC4O15439 1325 aa18.45■□□□□ 0.54
VARS-227ENST00000489979 ERBB4Q15303 1308 aa18.45■□□□□ 0.54
VARS-227ENST00000489979 SLC10A5Q5PT55 438 aa18.44■□□□□ 0.54
VARS-227ENST00000489979 SAPCD2Q86UD0 394 aa18.44■□□□□ 0.54
VARS-227ENST00000489979 SUPT20HQ8NEM7 779 aa18.44■□□□□ 0.54
VARS-227ENST00000489979 RTFDC1Q9BY42 306 aaPredicted RBP18.44■□□□□ 0.54
VARS-227ENST00000489979 GLIS2Q9BZE0 524 aaPredicted RBP18.44■□□□□ 0.54
VARS-227ENST00000489979 LRP10Q7Z4F1 713 aa18.43■□□□□ 0.54
VARS-227ENST00000489979 SLC34A2O95436 690 aa18.42■□□□□ 0.54
VARS-227ENST00000489979 EIF2S2P20042 333 aaKnown RBP18.42■□□□□ 0.54
VARS-227ENST00000489979 CIAPIN1Q6FI81 312 aa18.42■□□□□ 0.54
VARS-227ENST00000489979 DPP8Q6V1X1 898 aaPredicted RBP18.42■□□□□ 0.54
VARS-227ENST00000489979 CASP8AP2Q9UKL3 1982 aa18.42■□□□□ 0.54
VARS-227ENST00000489979 LAMB2P55268 1798 aa18.42■□□□□ 0.54
VARS-227ENST00000489979 BBOX1O75936 387 aa18.41■□□□□ 0.54
VARS-227ENST00000489979 ANXA1P04083 346 aa18.41■□□□□ 0.54
VARS-227ENST00000489979 MLLT1Q03111 559 aaPredicted RBP18.41■□□□□ 0.54
VARS-227ENST00000489979 PDIA6Q15084 440 aa18.41■□□□□ 0.54
VARS-227ENST00000489979 PROSER3Q2NL68 480 aa18.41■□□□□ 0.54
VARS-227ENST00000489979 SP8Q8IXZ3 490 aa18.41■□□□□ 0.54
VARS-227ENST00000489979 MPNDQ8N594 471 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms