RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 LDHDQ86WU2 507 aa24.21■■□□□ 1.47
HDAC6-231ENST00000488905 SYNE4Q8N205 404 aa24.21■■□□□ 1.47
HDAC6-231ENST00000488905 BABAM1Q9NWV8 329 aa24.21■■□□□ 1.47
HDAC6-231ENST00000488905 TMPOP42166 694 aaKnown RBP24.2■■□□□ 1.46
HDAC6-231ENST00000488905 CREBZFQ9NS37 354 aa24.2■■□□□ 1.46
HDAC6-231ENST00000488905 FZD9O00144 591 aa24.19■■□□□ 1.46
HDAC6-231ENST00000488905 EIF2S2P20042 333 aaKnown RBP24.19■■□□□ 1.46
HDAC6-231ENST00000488905 PDIA6Q15084 440 aa24.19■■□□□ 1.46
HDAC6-231ENST00000488905 CC2D2BQ6DHV5 1058 aa24.19■■□□□ 1.46
HDAC6-231ENST00000488905 MYBBP1AQ9BQG0 1328 aaKnown RBP24.18■■□□□ 1.46
HDAC6-231ENST00000488905 PROSER3Q2NL68 480 aa24.18■■□□□ 1.46
HDAC6-231ENST00000488905 PARP10Q53GL7 1025 aa24.18■■□□□ 1.46
HDAC6-231ENST00000488905 COL13A1Q5TAT6 717 aaPredicted RBP24.18■■□□□ 1.46
HDAC6-231ENST00000488905 PPP1R42Q7Z4L9 355 aa24.18■■□□□ 1.46
HDAC6-231ENST00000488905 HACL1Q9UJ83 578 aa24.18■■□□□ 1.46
HDAC6-231ENST00000488905 RNF123Q5XPI4 1314 aa24.17■■□□□ 1.46
HDAC6-231ENST00000488905 PASKQ96RG2 1323 aa24.17■■□□□ 1.46
HDAC6-231ENST00000488905 RBM17Q96I25 401 aaKnown RBP24.17■■□□□ 1.46
HDAC6-231ENST00000488905 LTBP1Q14766 1721 aa24.17■■□□□ 1.46
HDAC6-231ENST00000488905 PPEF1O14829 653 aaPredicted RBP24.16■■□□□ 1.46
HDAC6-231ENST00000488905 ANXA1P04083 346 aa24.16■■□□□ 1.46
HDAC6-231ENST00000488905 HSPA1AP0DMV8 641 aaKnown RBP24.16■■□□□ 1.46
HDAC6-231ENST00000488905 HSPA1BP0DMV9 641 aaKnown RBP24.16■■□□□ 1.46
HDAC6-231ENST00000488905 EAPPQ56P03 285 aaPredicted RBP24.16■■□□□ 1.46
HDAC6-231ENST00000488905 C3orf67Q6ZVT6 689 aa24.16■■□□□ 1.46
HDAC6-231ENST00000488905 JDP2Q8WYK2 163 aa24.16■■□□□ 1.46
HDAC6-231ENST00000488905 CRAMP1Q96RY5 1269 aa24.16■■□□□ 1.46
HDAC6-231ENST00000488905 EPHX2P34913 555 aa24.15■■□□□ 1.46
HDAC6-231ENST00000488905 GRIPAP1Q4V328 841 aa24.15■■□□□ 1.46
HDAC6-231ENST00000488905 GPC2Q8N158 579 aa24.15■■□□□ 1.46
HDAC6-231ENST00000488905 SLC51AQ86UW1 340 aa24.14■■□□□ 1.45
HDAC6-231ENST00000488905 CCDC146Q8IYE0 955 aa24.14■■□□□ 1.45
HDAC6-231ENST00000488905 UTP14AQ9BVJ6 771 aaKnown RBP24.13■■□□□ 1.45
HDAC6-231ENST00000488905 MKRN1Q9UHC7 482 aaKnown RBP24.13■■□□□ 1.45
HDAC6-231ENST00000488905 DDX10Q13206 875 aaKnown RBP24.12■■□□□ 1.45
HDAC6-231ENST00000488905 PNMA8AQ86V59 439 aaPredicted RBP24.12■■□□□ 1.45
HDAC6-231ENST00000488905 NECTIN2Q92692 538 aa24.12■■□□□ 1.45
HDAC6-231ENST00000488905 NLRP3Q96P20 1036 aa24.12■■□□□ 1.45
HDAC6-231ENST00000488905 TAF1P21675 1872 aa24.12■■□□□ 1.45
HDAC6-231ENST00000488905 CNTNAP1P78357 1384 aa24.12■■□□□ 1.45
HDAC6-231ENST00000488905 DDX60Q8IY21 1712 aaKnown RBP24.12■■□□□ 1.45
HDAC6-231ENST00000488905 EIF6P56537 245 aaKnown RBP24.11■■□□□ 1.45
HDAC6-231ENST00000488905 NEUROD2Q15784 382 aa24.11■■□□□ 1.45
HDAC6-231ENST00000488905 ABCC4O15439 1325 aa24.1■■□□□ 1.45
HDAC6-231ENST00000488905 TCERG1O14776 1098 aaKnown RBP24.1■■□□□ 1.45
HDAC6-231ENST00000488905 ITGBL1O95965 494 aaPredicted RBP24.1■■□□□ 1.45
HDAC6-231ENST00000488905 HSP90AB3PQ58FF7 597 aa24.1■■□□□ 1.45
HDAC6-231ENST00000488905 COPS6Q7L5N1 327 aa24.1■■□□□ 1.45
HDAC6-231ENST00000488905 LARGE2Q8N3Y3 721 aa24.1■■□□□ 1.45
HDAC6-231ENST00000488905 XAGE3Q8WTP9 111 aa24.1■■□□□ 1.45
HDAC6-231ENST00000488905 CLEC11AQ9Y240 323 aa24.1■■□□□ 1.45
HDAC6-231ENST00000488905 AIMP1Q12904 312 aaKnown RBP24.09■■□□□ 1.45
HDAC6-231ENST00000488905 WDR43Q15061 677 aaKnown RBP eCLIP24.09■■□□□ 1.45
HDAC6-231ENST00000488905 KRT24Q2M2I5 525 aa24.09■■□□□ 1.45
HDAC6-231ENST00000488905 SLC10A5Q5PT55 438 aa24.09■■□□□ 1.45
HDAC6-231ENST00000488905 RUNDC1Q96C34 613 aa24.09■■□□□ 1.45
HDAC6-231ENST00000488905 LRRC37AA6NMS7 1700 aa24.09■■□□□ 1.45
HDAC6-231ENST00000488905 CHL1O00533 1208 aa24.08■■□□□ 1.45
HDAC6-231ENST00000488905 NLRP10Q86W26 655 aa24.08■■□□□ 1.45
HDAC6-231ENST00000488905 DDX21Q9NR30 783 aaKnown RBP eCLIP24.08■■□□□ 1.45
HDAC6-231ENST00000488905 TRIM35Q9UPQ4 493 aa24.08■■□□□ 1.45
HDAC6-231ENST00000488905 GJA3Q9Y6H8 435 aa24.08■■□□□ 1.45
HDAC6-231ENST00000488905 TRPM7Q96QT4 1865 aa24.08■■□□□ 1.45
HDAC6-231ENST00000488905 TMEM88BA6NKF7 163 aa24.07■■□□□ 1.44
HDAC6-231ENST00000488905 TNS4Q8IZW8 715 aa24.07■■□□□ 1.44
HDAC6-231ENST00000488905 ATP6V0A2Q9Y487 856 aa24.07■■□□□ 1.44
HDAC6-231ENST00000488905 LMOD1P29536 600 aaPredicted RBP24.06■■□□□ 1.44
HDAC6-231ENST00000488905 MAP1SQ66K74 1059 aaPredicted RBP24.06■■□□□ 1.44
HDAC6-231ENST00000488905 NIM1KQ8IY84 436 aa24.06■■□□□ 1.44
HDAC6-231ENST00000488905 TMX4Q9H1E5 349 aaPredicted RBP24.06■■□□□ 1.44
HDAC6-231ENST00000488905 LAS1LQ9Y4W2 734 aaKnown RBP24.06■■□□□ 1.44
HDAC6-231ENST00000488905 PPIP5K2O43314 1243 aa24.05■■□□□ 1.44
HDAC6-231ENST00000488905 SCNN1DP51172 638 aa24.05■■□□□ 1.44
HDAC6-231ENST00000488905 TCIRG1Q13488 830 aa24.05■■□□□ 1.44
HDAC6-231ENST00000488905 CHPF2Q9P2E5 772 aa24.05■■□□□ 1.44
HDAC6-231ENST00000488905 HOXB7P09629 217 aa24.04■■□□□ 1.44
HDAC6-231ENST00000488905 HCLS1P14317 486 aaPredicted RBP24.04■■□□□ 1.44
HDAC6-231ENST00000488905 AOC3Q16853 763 aa24.04■■□□□ 1.44
HDAC6-231ENST00000488905 HDGFL1Q5TGJ6 251 aa24.04■■□□□ 1.44
HDAC6-231ENST00000488905 CNTROBQ8N137 903 aa24.04■■□□□ 1.44
HDAC6-231ENST00000488905 TRMT112Q9UI30 125 aaKnown RBP24.04■■□□□ 1.44
HDAC6-231ENST00000488905 SH3TC1Q8TE82 1336 aa24.04■■□□□ 1.44
HDAC6-231ENST00000488905 DUOX1Q9NRD9 1551 aa24.03■■□□□ 1.44
HDAC6-231ENST00000488905 RTFDC1Q9BY42 306 aaPredicted RBP24.02■■□□□ 1.44
HDAC6-231ENST00000488905 VPS33BQ9H267 617 aa24.02■■□□□ 1.44
HDAC6-231ENST00000488905 ADAMTS8Q9UP79 889 aa24.02■■□□□ 1.44
HDAC6-231ENST00000488905 BBOX1O75936 387 aa24.01■■□□□ 1.43
HDAC6-231ENST00000488905 EPS15P42566 896 aa24.01■■□□□ 1.43
HDAC6-231ENST00000488905 SUPT20HQ8NEM7 779 aa24.01■■□□□ 1.43
HDAC6-231ENST00000488905 VEGFBP49765 207 aa24■■□□□ 1.43
HDAC6-231ENST00000488905 DPP8Q6V1X1 898 aaPredicted RBP24■■□□□ 1.43
HDAC6-231ENST00000488905 DDX46Q7L014 1031 aaKnown RBP24■■□□□ 1.43
HDAC6-231ENST00000488905 THSD7BQ9C0I4 1608 aa23.99■■□□□ 1.43
HDAC6-231ENST00000488905 GRAPQ13588 217 aa23.99■■□□□ 1.43
HDAC6-231ENST00000488905 SP8Q8IXZ3 490 aa23.99■■□□□ 1.43
HDAC6-231ENST00000488905 PLBD2Q8NHP8 589 aa23.99■■□□□ 1.43
HDAC6-231ENST00000488905 GRAPLQ8TC17 118 aaPredicted RBP23.99■■□□□ 1.43
HDAC6-231ENST00000488905 CFAP44Q96MT7 982 aa23.99■■□□□ 1.43
HDAC6-231ENST00000488905 DBF4Q9UBU7 674 aaPredicted RBP23.99■■□□□ 1.43
HDAC6-231ENST00000488905 RASSF10A6NK89 507 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms