RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 SYT17Q9BSW7 474 aa14.09□□□□□ -0.15
UBE4B-210ENST00000488228 CD2APQ9Y5K6 639 aa14.09□□□□□ -0.15
UBE4B-210ENST00000488228 RIC1Q4ADV7 1423 aa14.08□□□□□ -0.15
UBE4B-210ENST00000488228 BCAR3O75815 825 aa14.08□□□□□ -0.16
UBE4B-210ENST00000488228 IGKV5-2P06315 115 aa14.08□□□□□ -0.16
UBE4B-210ENST00000488228 ST5P78524 1137 aa14.08□□□□□ -0.16
UBE4B-210ENST00000488228 CWF19L2Q2TBE0 894 aaKnown RBP14.08□□□□□ -0.16
UBE4B-210ENST00000488228 ERFEQ4G0M1 354 aa14.08□□□□□ -0.16
UBE4B-210ENST00000488228 WWC3Q9ULE0 1092 aa14.08□□□□□ -0.16
UBE4B-210ENST00000488228 PTPRCP08575 1304 aa14.08□□□□□ -0.16
UBE4B-210ENST00000488228 KIF16BQ96L93 1317 aa14.08□□□□□ -0.16
UBE4B-210ENST00000488228 UTP14AQ9BVJ6 771 aaKnown RBP14.07□□□□□ -0.16
UBE4B-210ENST00000488228 NYXQ9GZU5 481 aa14.07□□□□□ -0.16
UBE4B-210ENST00000488228 COL4A1P02462 1669 aa14.07□□□□□ -0.16
UBE4B-210ENST00000488228 SLX4Q8IY92 1834 aa14.06□□□□□ -0.16
UBE4B-210ENST00000488228 GOLGB1Q14789 3259 aaKnown RBP14.06□□□□□ -0.16
UBE4B-210ENST00000488228 NEURL1BA8MQ27 555 aa14.06□□□□□ -0.16
UBE4B-210ENST00000488228 GTF2E1P29083 439 aaPredicted RBP14.06□□□□□ -0.16
UBE4B-210ENST00000488228 CHRNA5P30532 468 aa14.06□□□□□ -0.16
UBE4B-210ENST00000488228 NEXNQ0ZGT2 675 aa14.06□□□□□ -0.16
UBE4B-210ENST00000488228 RTL5Q5HYW3 569 aaPredicted RBP14.06□□□□□ -0.16
UBE4B-210ENST00000488228 SLC4A10Q6U841 1118 aa14.06□□□□□ -0.16
UBE4B-210ENST00000488228 TPTE2Q6XPS3 522 aa14.06□□□□□ -0.16
UBE4B-210ENST00000488228 PPP1R42Q7Z4L9 355 aa14.06□□□□□ -0.16
UBE4B-210ENST00000488228 SYNE4Q8N205 404 aa14.06□□□□□ -0.16
UBE4B-210ENST00000488228 CWC25Q9NXE8 425 aaPredicted RBP14.06□□□□□ -0.16
UBE4B-210ENST00000488228 TRMT112Q9UI30 125 aaKnown RBP14.06□□□□□ -0.16
UBE4B-210ENST00000488228 NOB1Q9ULX3 412 aaKnown RBP14.06□□□□□ -0.16
UBE4B-210ENST00000488228 DPEP1P16444 411 aa14.05□□□□□ -0.16
UBE4B-210ENST00000488228 BRPF1P55201 1214 aaPredicted RBP14.05□□□□□ -0.16
UBE4B-210ENST00000488228 C3orf67Q6ZVT6 689 aa14.05□□□□□ -0.16
UBE4B-210ENST00000488228 JARID2Q92833 1246 aaPredicted RBP14.05□□□□□ -0.16
UBE4B-210ENST00000488228 TNNQ9UQP3 1299 aa14.05□□□□□ -0.16
UBE4B-210ENST00000488228 SH3TC1Q8TE82 1336 aa14.05□□□□□ -0.16
UBE4B-210ENST00000488228 A0A0G2JLW4 131 aa14.04□□□□□ -0.16
UBE4B-210ENST00000488228 TRIM28Q13263 835 aaKnown RBP14.04□□□□□ -0.16
UBE4B-210ENST00000488228 BEND3Q5T5X7 828 aa14.04□□□□□ -0.16
UBE4B-210ENST00000488228 C2CD5Q86YS7 1000 aa14.04□□□□□ -0.16
UBE4B-210ENST00000488228 CCDC191Q8NCU4 936 aa14.04□□□□□ -0.16
UBE4B-210ENST00000488228 LINS1Q8NG48 757 aa14.04□□□□□ -0.16
UBE4B-210ENST00000488228 FRAT1Q92837 279 aaPredicted RBP14.04□□□□□ -0.16
UBE4B-210ENST00000488228 FAM89AQ96GI7 184 aa14.04□□□□□ -0.16
UBE4B-210ENST00000488228 BRIP1Q9BX63 1249 aa14.04□□□□□ -0.16
UBE4B-210ENST00000488228 RNF123Q5XPI4 1314 aa14.04□□□□□ -0.16
UBE4B-210ENST00000488228 HCLS1P14317 486 aaPredicted RBP14.03□□□□□ -0.16
UBE4B-210ENST00000488228 RCAN3Q9UKA8 241 aa14.03□□□□□ -0.16
UBE4B-210ENST00000488228 LRRC37AA6NMS7 1700 aa14.03□□□□□ -0.16
UBE4B-210ENST00000488228 A0A1B0GUL6 1792 aa14.02□□□□□ -0.16
UBE4B-210ENST00000488228 ABCC4O15439 1325 aa14.02□□□□□ -0.17
UBE4B-210ENST00000488228 TRIM27P14373 513 aa14.02□□□□□ -0.17
UBE4B-210ENST00000488228 PDE6BP35913 854 aa14.02□□□□□ -0.17
UBE4B-210ENST00000488228 TGFB2P61812 414 aa14.02□□□□□ -0.17
UBE4B-210ENST00000488228 GCKRQ14397 625 aa14.02□□□□□ -0.17
UBE4B-210ENST00000488228 PCCAP05165 728 aaPredicted RBP14.01□□□□□ -0.17
UBE4B-210ENST00000488228 UBE3BQ7Z3V4 1068 aa14.01□□□□□ -0.17
UBE4B-210ENST00000488228 PELP1Q8IZL8 1130 aaKnown RBP14.01□□□□□ -0.17
UBE4B-210ENST00000488228 ZBTB38Q8NAP3 1195 aaPredicted RBP14.01□□□□□ -0.17
UBE4B-210ENST00000488228 API5Q9BZZ5 524 aaKnown RBP14.01□□□□□ -0.17
UBE4B-210ENST00000488228 SRCIN1Q9C0H9 1055 aa14.01□□□□□ -0.17
UBE4B-210ENST00000488228 FER1L6Q2WGJ9 1857 aa14.01□□□□□ -0.17
UBE4B-210ENST00000488228 CCDC88AQ3V6T2 1871 aa14.01□□□□□ -0.17
UBE4B-210ENST00000488228 H0YIN7 160 aa14□□□□□ -0.17
UBE4B-210ENST00000488228 IRS4O14654 1257 aaPredicted RBP14□□□□□ -0.17
UBE4B-210ENST00000488228 KCNA3P22001 575 aa14□□□□□ -0.17
UBE4B-210ENST00000488228 ATF7IPQ6VMQ6 1270 aa14□□□□□ -0.17
UBE4B-210ENST00000488228 CLUAP1Q96AJ1 413 aa14□□□□□ -0.17
UBE4B-210ENST00000488228 CHD4Q14839 1912 aa14□□□□□ -0.17
UBE4B-210ENST00000488228 CDHR2Q9BYE9 1310 aa13.99□□□□□ -0.17
UBE4B-210ENST00000488228 ALDH1L1O75891 902 aa13.99□□□□□ -0.17
UBE4B-210ENST00000488228 SRGNP10124 158 aa13.99□□□□□ -0.17
UBE4B-210ENST00000488228 YBX3P16989 372 aaKnown RBP eCLIP13.99□□□□□ -0.17
UBE4B-210ENST00000488228 CRY2Q49AN0 593 aa13.99□□□□□ -0.17
UBE4B-210ENST00000488228 ZKSCAN2Q63HK3 967 aa13.99□□□□□ -0.17
UBE4B-210ENST00000488228 ARHGAP45Q92619 1136 aa13.99□□□□□ -0.17
UBE4B-210ENST00000488228 ZNF622Q969S3 477 aaKnown RBP eCLIP13.99□□□□□ -0.17
UBE4B-210ENST00000488228 KLRG2A4D1S0 409 aaPredicted RBP13.98□□□□□ -0.17
UBE4B-210ENST00000488228 GRM8O00222 908 aa13.98□□□□□ -0.17
UBE4B-210ENST00000488228 IPO8O15397 1037 aaKnown RBP13.98□□□□□ -0.17
UBE4B-210ENST00000488228 CASP7P55210 303 aa13.98□□□□□ -0.17
UBE4B-210ENST00000488228 SLC10A5Q5PT55 438 aa13.98□□□□□ -0.17
UBE4B-210ENST00000488228 RPGRQ92834 1020 aaKnown RBP13.98□□□□□ -0.17
UBE4B-210ENST00000488228 BCS1LQ9Y276 419 aa13.98□□□□□ -0.17
UBE4B-210ENST00000488228 TIAM2Q8IVF5 1701 aa13.98□□□□□ -0.17
UBE4B-210ENST00000488228 SBF1O95248 1867 aa13.97□□□□□ -0.17
UBE4B-210ENST00000488228 UTRNP46939 3433 aa13.97□□□□□ -0.17
UBE4B-210ENST00000488228 H7C1W4 665 aa13.97□□□□□ -0.17
UBE4B-210ENST00000488228 NPR1P16066 1061 aa13.97□□□□□ -0.17
UBE4B-210ENST00000488228 CCT4P50991 539 aaKnown RBP13.97□□□□□ -0.17
UBE4B-210ENST00000488228 STYK1Q6J9G0 422 aa13.97□□□□□ -0.17
UBE4B-210ENST00000488228 SLC51AQ86UW1 340 aa13.97□□□□□ -0.17
UBE4B-210ENST00000488228 MASTLQ96GX5 879 aa13.97□□□□□ -0.17
UBE4B-210ENST00000488228 NLRP3Q96P20 1036 aa13.97□□□□□ -0.17
UBE4B-210ENST00000488228 CCDC85AQ96PX6 553 aaPredicted RBP13.97□□□□□ -0.17
UBE4B-210ENST00000488228 PIM2Q9P1W9 311 aa13.97□□□□□ -0.17
UBE4B-210ENST00000488228 LTBP1Q14766 1721 aa13.96□□□□□ -0.17
UBE4B-210ENST00000488228 PLIN1O60240 522 aa13.96□□□□□ -0.17
UBE4B-210ENST00000488228 RLBP1P12271 317 aa13.96□□□□□ -0.17
UBE4B-210ENST00000488228 CTSWP56202 376 aa13.96□□□□□ -0.17
UBE4B-210ENST00000488228 DALRD3Q5D0E6 543 aaKnown RBP13.96□□□□□ -0.17
UBE4B-210ENST00000488228 PRPF40BQ6NWY9 871 aaKnown RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms