RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 ZNF385CQ66K41 422 aaPredicted RBP9.78□□□□□ -0.84
TMEM39A-209ENST00000486235 PPP2R2DQ66LE6 453 aa9.78□□□□□ -0.84
TMEM39A-209ENST00000486235 SV2AQ7L0J3 742 aa9.78□□□□□ -0.84
TMEM39A-209ENST00000486235 TMEM151AQ8N4L1 468 aa9.78□□□□□ -0.84
TMEM39A-209ENST00000486235 SVOPQ8N4V2 548 aa9.78□□□□□ -0.84
TMEM39A-209ENST00000486235 SPHKAPQ2M3C7 1700 aa9.78□□□□□ -0.84
TMEM39A-209ENST00000486235 NEXMIFQ5QGS0 1516 aa9.77□□□□□ -0.84
TMEM39A-209ENST00000486235 ROBO2Q9HCK4 1378 aa9.77□□□□□ -0.84
TMEM39A-209ENST00000486235 ERVH48-1M5A8F1 160 aa9.77□□□□□ -0.85
TMEM39A-209ENST00000486235 GDF11O95390 407 aa9.77□□□□□ -0.85
TMEM39A-209ENST00000486235 RASSF7Q02833 373 aa9.77□□□□□ -0.85
TMEM39A-209ENST00000486235 DZIP3Q86Y13 1208 aaKnown RBP9.77□□□□□ -0.85
TMEM39A-209ENST00000486235 PPARGC1BQ86YN6 1023 aaKnown RBP9.77□□□□□ -0.85
TMEM39A-209ENST00000486235 RNF217Q8TC41 542 aa9.77□□□□□ -0.85
TMEM39A-209ENST00000486235 CLTCL1P53675 1640 aa9.77□□□□□ -0.85
TMEM39A-209ENST00000486235 ATRNO75882 1429 aa9.76□□□□□ -0.85
TMEM39A-209ENST00000486235 PTCH1Q13635 1447 aa9.76□□□□□ -0.85
TMEM39A-209ENST00000486235 NBPF20Q3BBV1 942 aa9.76□□□□□ -0.85
TMEM39A-209ENST00000486235 FNBP4Q8N3X1 1017 aaPredicted RBP9.76□□□□□ -0.85
TMEM39A-209ENST00000486235 GPSM3Q9Y4H4 160 aa9.76□□□□□ -0.85
TMEM39A-209ENST00000486235 SENP3-EIF4A1A0A087X0R7 540 aa9.75□□□□□ -0.85
TMEM39A-209ENST00000486235 USP17L8P0C7I0 530 aa9.75□□□□□ -0.85
TMEM39A-209ENST00000486235 XPCQ01831 940 aaPredicted RBP9.75□□□□□ -0.85
TMEM39A-209ENST00000486235 DDRGK1Q96HY6 314 aa9.75□□□□□ -0.85
TMEM39A-209ENST00000486235 LILRA1O75019 489 aa9.74□□□□□ -0.85
TMEM39A-209ENST00000486235 ADH1AP07327 375 aa9.74□□□□□ -0.85
TMEM39A-209ENST00000486235 SUZ12Q15022 739 aaKnown RBP9.74□□□□□ -0.85
TMEM39A-209ENST00000486235 ESCO1Q5FWF5 840 aa9.74□□□□□ -0.85
TMEM39A-209ENST00000486235 PTGIRP43119 386 aa9.73□□□□□ -0.85
TMEM39A-209ENST00000486235 FOXD4L5Q5VV16 416 aaPredicted RBP9.73□□□□□ -0.85
TMEM39A-209ENST00000486235 KDF1Q8NAX2 398 aaPredicted RBP9.73□□□□□ -0.85
TMEM39A-209ENST00000486235 CYLDQ9NQC7 956 aa9.73□□□□□ -0.85
TMEM39A-209ENST00000486235 LAMC1P11047 1609 aa9.73□□□□□ -0.85
TMEM39A-209ENST00000486235 MYOM2P54296 1465 aa9.72□□□□□ -0.85
TMEM39A-209ENST00000486235 FOXO3O43524 673 aa9.72□□□□□ -0.85
TMEM39A-209ENST00000486235 PNMA1Q8ND90 353 aa9.72□□□□□ -0.85
TMEM39A-209ENST00000486235 CUEDC1Q9NWM3 386 aaPredicted RBP9.72□□□□□ -0.85
TMEM39A-209ENST00000486235 NPHP3Q7Z494 1330 aa9.72□□□□□ -0.85
TMEM39A-209ENST00000486235 BCL9LQ86UU0 1499 aa9.72□□□□□ -0.85
TMEM39A-209ENST00000486235 LOC100996750A0A140TA64 210 aa9.71□□□□□ -0.86
TMEM39A-209ENST00000486235 SLURP2P0DP57 97 aa9.71□□□□□ -0.86
TMEM39A-209ENST00000486235 RHOQP17081 205 aa9.71□□□□□ -0.86
TMEM39A-209ENST00000486235 PRICKLE2Q7Z3G6 844 aa9.71□□□□□ -0.86
TMEM39A-209ENST00000486235 GJD4Q96KN9 370 aaPredicted RBP9.71□□□□□ -0.86
TMEM39A-209ENST00000486235 KRTAP4-6Q9BYQ5 205 aa9.71□□□□□ -0.86
TMEM39A-209ENST00000486235 HFM1A2PYH4 1435 aa9.71□□□□□ -0.86
TMEM39A-209ENST00000486235 COL22A1Q8NFW1 1626 aaPredicted RBP9.71□□□□□ -0.86
TMEM39A-209ENST00000486235 IRS1P35568 1242 aa9.7□□□□□ -0.86
TMEM39A-209ENST00000486235 RFC5P40937 340 aa9.7□□□□□ -0.86
TMEM39A-209ENST00000486235 LYSMD3Q7Z3D4 306 aa9.7□□□□□ -0.86
TMEM39A-209ENST00000486235 CCDC125Q86Z20 511 aa9.7□□□□□ -0.86
TMEM39A-209ENST00000486235 PXDNQ92626 1479 aa9.7□□□□□ -0.86
TMEM39A-209ENST00000486235 SRCAPQ6ZRS2 3230 aa9.7□□□□□ -0.86
TMEM39A-209ENST00000486235 KIF1BO60333 1816 aa9.7□□□□□ -0.86
TMEM39A-209ENST00000486235 RNF225M0QZC1 329 aaPredicted RBP9.69□□□□□ -0.86
TMEM39A-209ENST00000486235 DEFB132Q7Z7B7 95 aa9.69□□□□□ -0.86
TMEM39A-209ENST00000486235 PRAG1Q86YV5 1406 aa9.69□□□□□ -0.86
TMEM39A-209ENST00000486235 STK26Q9P289 416 aa9.69□□□□□ -0.86
TMEM39A-209ENST00000486235 NAIPQ13075 1403 aa9.68□□□□□ -0.86
TMEM39A-209ENST00000486235 RPGRIP1LQ68CZ1 1315 aa9.68□□□□□ -0.86
TMEM39A-209ENST00000486235 ESPNB1AK53 854 aa9.68□□□□□ -0.86
TMEM39A-209ENST00000486235 ARHGEF15O94989 841 aa9.68□□□□□ -0.86
TMEM39A-209ENST00000486235 MARSP56192 900 aaKnown RBP9.68□□□□□ -0.86
TMEM39A-209ENST00000486235 LYPD4Q6UWN0 246 aa9.68□□□□□ -0.86
TMEM39A-209ENST00000486235 WAPLQ7Z5K2 1190 aa9.68□□□□□ -0.86
TMEM39A-209ENST00000486235 UNC5CLQ8IV45 518 aa9.68□□□□□ -0.86
TMEM39A-209ENST00000486235 CDC42BPGQ6DT37 1551 aa9.67□□□□□ -0.86
TMEM39A-209ENST00000486235 RALGAPBQ86X10 1494 aa9.67□□□□□ -0.86
TMEM39A-209ENST00000486235 LRPPRCP42704 1394 aaKnown RBP9.67□□□□□ -0.86
TMEM39A-209ENST00000486235 GIGYF1O75420 1035 aaPredicted RBP9.67□□□□□ -0.86
TMEM39A-209ENST00000486235 TRIM34Q9BYJ4 488 aa9.67□□□□□ -0.86
TMEM39A-209ENST00000486235 BLMP54132 1417 aaPredicted RBP9.66□□□□□ -0.86
TMEM39A-209ENST00000486235 PLEKHH1Q9ULM0 1364 aa9.66□□□□□ -0.86
TMEM39A-209ENST00000486235 ADGRF5Q8IZF2 1346 aa9.66□□□□□ -0.86
TMEM39A-209ENST00000486235 MEN1O00255 615 aa9.66□□□□□ -0.86
TMEM39A-209ENST00000486235 PCDHB9Q9Y5E1 797 aa9.66□□□□□ -0.86
TMEM39A-209ENST00000486235 GLI3P10071 1580 aa9.66□□□□□ -0.86
TMEM39A-209ENST00000486235 SLIT2O94813 1529 aa9.66□□□□□ -0.86
TMEM39A-209ENST00000486235 MARF1Q9Y4F3 1742 aaKnown RBP9.65□□□□□ -0.86
TMEM39A-209ENST00000486235 SPATA31A3Q5VYP0 1347 aa9.65□□□□□ -0.86
TMEM39A-209ENST00000486235 SF3B2Q13435 895 aaKnown RBP9.65□□□□□ -0.86
TMEM39A-209ENST00000486235 GAS6Q14393 721 aa9.65□□□□□ -0.86
TMEM39A-209ENST00000486235 RGL3Q3MIN7 710 aa9.65□□□□□ -0.86
TMEM39A-209ENST00000486235 TMEM132EQ6IEE7 984 aa9.65□□□□□ -0.86
TMEM39A-209ENST00000486235 SEPT12Q8IYM1 358 aa9.65□□□□□ -0.86
TMEM39A-209ENST00000486235 CCDC9Q9Y3X0 531 aaKnown RBP9.65□□□□□ -0.86
TMEM39A-209ENST00000486235 GPR25O00155 361 aa9.64□□□□□ -0.87
TMEM39A-209ENST00000486235 GPAT2Q6NUI2 795 aa9.64□□□□□ -0.87
TMEM39A-209ENST00000486235 KRT28Q7Z3Y7 464 aa9.64□□□□□ -0.87
TMEM39A-209ENST00000486235 PPLO60437 1756 aa9.64□□□□□ -0.87
TMEM39A-209ENST00000486235 RRBP1Q9P2E9 1410 aaKnown RBP9.64□□□□□ -0.87
TMEM39A-209ENST00000486235 ATP5J2-PTCD1G3V325 749 aa9.63□□□□□ -0.87
TMEM39A-209ENST00000486235 RNF144AP50876 292 aaPredicted RBP9.63□□□□□ -0.87
TMEM39A-209ENST00000486235 RIPOR1Q6ZS17 1223 aa9.63□□□□□ -0.87
TMEM39A-209ENST00000486235 ERICH6Q7L0X2 663 aa9.63□□□□□ -0.87
TMEM39A-209ENST00000486235 CCDC144AA2RUR9 1427 aa9.63□□□□□ -0.87
TMEM39A-209ENST00000486235 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.62□□□□□ -0.87
TMEM39A-209ENST00000486235 MAP3K10Q02779 954 aa9.62□□□□□ -0.87
TMEM39A-209ENST00000486235 SRSF11Q05519 484 aaKnown RBP9.62□□□□□ -0.87
TMEM39A-209ENST00000486235 VPS72Q15906 364 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 124.5 ms