RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 PSMD1Q99460 953 aa15.83■□□□□ 0.12
SQSTM1-207ENST00000481335 GPTP24298 496 aa15.82■□□□□ 0.12
SQSTM1-207ENST00000481335 SUSD4Q5VX71 490 aa15.82■□□□□ 0.12
SQSTM1-207ENST00000481335 NUTM1Q86Y26 1132 aa15.82■□□□□ 0.12
SQSTM1-207ENST00000481335 LAMB2P55268 1798 aa15.82■□□□□ 0.12
SQSTM1-207ENST00000481335 IQCA1LA6NCM1 817 aa15.81■□□□□ 0.12
SQSTM1-207ENST00000481335 ZEB1P37275 1124 aaPredicted RBP15.81■□□□□ 0.12
SQSTM1-207ENST00000481335 RBM17Q96I25 401 aaKnown RBP15.81■□□□□ 0.12
SQSTM1-207ENST00000481335 L3MBTL3Q96JM7 780 aaPredicted RBP15.81■□□□□ 0.12
SQSTM1-207ENST00000481335 CRAMP1Q96RY5 1269 aa15.81■□□□□ 0.12
SQSTM1-207ENST00000481335 POTECB2RU33 542 aa15.8■□□□□ 0.12
SQSTM1-207ENST00000481335 PROSER3Q2NL68 480 aa15.8■□□□□ 0.12
SQSTM1-207ENST00000481335 SLC10A5Q5PT55 438 aa15.8■□□□□ 0.12
SQSTM1-207ENST00000481335 DNAJC5GQ8N7S2 189 aa15.8■□□□□ 0.12
SQSTM1-207ENST00000481335 NLRP3Q96P20 1036 aa15.8■□□□□ 0.12
SQSTM1-207ENST00000481335 UTP14AQ9BVJ6 771 aaKnown RBP15.8■□□□□ 0.12
SQSTM1-207ENST00000481335 IARSP41252 1262 aaKnown RBP15.79■□□□□ 0.12
SQSTM1-207ENST00000481335 HDGFL1Q5TGJ6 251 aa15.79■□□□□ 0.12
SQSTM1-207ENST00000481335 COPS6Q7L5N1 327 aa15.79■□□□□ 0.12
SQSTM1-207ENST00000481335 CHMP4AQ9BY43 222 aa15.79■□□□□ 0.12
SQSTM1-207ENST00000481335 DBF4Q9UBU7 674 aaPredicted RBP15.79■□□□□ 0.12
SQSTM1-207ENST00000481335 TCIRG1Q13488 830 aa15.78■□□□□ 0.12
SQSTM1-207ENST00000481335 XAGE3Q8WTP9 111 aa15.78■□□□□ 0.12
SQSTM1-207ENST00000481335 IFT57Q9NWB7 429 aa15.78■□□□□ 0.12
SQSTM1-207ENST00000481335 LAS1LQ9Y4W2 734 aaKnown RBP15.78■□□□□ 0.12
SQSTM1-207ENST00000481335 FZD9O00144 591 aa15.77■□□□□ 0.12
SQSTM1-207ENST00000481335 ANXA1P04083 346 aa15.77■□□□□ 0.12
SQSTM1-207ENST00000481335 ZNF853P0CG23 659 aa15.77■□□□□ 0.12
SQSTM1-207ENST00000481335 GNAI1P63096 354 aa15.77■□□□□ 0.12
SQSTM1-207ENST00000481335 NLRP10Q86W26 655 aa15.77■□□□□ 0.12
SQSTM1-207ENST00000481335 PLBD2Q8NHP8 589 aa15.77■□□□□ 0.12
SQSTM1-207ENST00000481335 KLRG1Q96E93 195 aa15.77■□□□□ 0.12
SQSTM1-207ENST00000481335 TMX4Q9H1E5 349 aaPredicted RBP15.77■□□□□ 0.12
SQSTM1-207ENST00000481335 VPS33BQ9H267 617 aa15.77■□□□□ 0.12
SQSTM1-207ENST00000481335 ZNF277Q9NRM2 450 aaPredicted RBP15.77■□□□□ 0.12
SQSTM1-207ENST00000481335 HYPKQ9NX55 129 aa15.77■□□□□ 0.12
SQSTM1-207ENST00000481335 CHPF2Q9P2E5 772 aa15.77■□□□□ 0.12
SQSTM1-207ENST00000481335 SH3TC1Q8TE82 1336 aa15.76■□□□□ 0.11
SQSTM1-207ENST00000481335 PPEF1O14829 653 aaPredicted RBP15.76■□□□□ 0.11
SQSTM1-207ENST00000481335 DDNO94850 711 aaPredicted RBP15.76■□□□□ 0.11
SQSTM1-207ENST00000481335 SYNE4Q8N205 404 aa15.76■□□□□ 0.11
SQSTM1-207ENST00000481335 JDP2Q8WYK2 163 aa15.76■□□□□ 0.11
SQSTM1-207ENST00000481335 MBIPQ9NS73 344 aa15.76■□□□□ 0.11
SQSTM1-207ENST00000481335 DDX60Q8IY21 1712 aaKnown RBP15.76■□□□□ 0.11
SQSTM1-207ENST00000481335 ADAMTSL1Q8N6G6 1762 aa15.75■□□□□ 0.11
SQSTM1-207ENST00000481335 LRRC37AA6NMS7 1700 aa15.75■□□□□ 0.11
SQSTM1-207ENST00000481335 APAF1O14727 1248 aa15.75■□□□□ 0.11
SQSTM1-207ENST00000481335 AIMP1Q12904 312 aaKnown RBP15.75■□□□□ 0.11
SQSTM1-207ENST00000481335 KRT24Q2M2I5 525 aa15.75■□□□□ 0.11
SQSTM1-207ENST00000481335 DUSP27Q5VZP5 1158 aa15.75■□□□□ 0.11
SQSTM1-207ENST00000481335 NECTIN2Q92692 538 aa15.75■□□□□ 0.11
SQSTM1-207ENST00000481335 NCBP3Q53F19 620 aaKnown RBP15.74■□□□□ 0.11
SQSTM1-207ENST00000481335 CHADLQ6NUI6 762 aa15.74■□□□□ 0.11
SQSTM1-207ENST00000481335 OLFM4Q6UX06 510 aa15.74■□□□□ 0.11
SQSTM1-207ENST00000481335 ANKRD13DQ6ZTN6 518 aa15.74■□□□□ 0.11
SQSTM1-207ENST00000481335 TMC4Q7Z404 712 aa15.74■□□□□ 0.11
SQSTM1-207ENST00000481335 LDHDQ86WU2 507 aa15.74■□□□□ 0.11
SQSTM1-207ENST00000481335 GPC2Q8N158 579 aa15.74■□□□□ 0.11
SQSTM1-207ENST00000481335 JMYQ8N9B5 988 aa15.74■□□□□ 0.11
SQSTM1-207ENST00000481335 ATP6V0A2Q9Y487 856 aa15.74■□□□□ 0.11
SQSTM1-207ENST00000481335 PCNTO95613 3336 aa15.74■□□□□ 0.11
SQSTM1-207ENST00000481335 ZNF541Q9H0D2 1346 aa15.73■□□□□ 0.11
SQSTM1-207ENST00000481335 BBOX1O75936 387 aa15.73■□□□□ 0.11
SQSTM1-207ENST00000481335 SUPT20HQ8NEM7 779 aa15.73■□□□□ 0.11
SQSTM1-207ENST00000481335 TAF1DQ9H5J8 278 aaPredicted RBP15.73■□□□□ 0.11
SQSTM1-207ENST00000481335 TRMT112Q9UI30 125 aaKnown RBP15.73■□□□□ 0.11
SQSTM1-207ENST00000481335 ABCC4O15439 1325 aa15.72■□□□□ 0.11
SQSTM1-207ENST00000481335 EIF6P56537 245 aaKnown RBP15.72■□□□□ 0.11
SQSTM1-207ENST00000481335 TRIM28Q13263 835 aaKnown RBP15.72■□□□□ 0.11
SQSTM1-207ENST00000481335 CCDC27Q2M243 656 aa15.72■□□□□ 0.11
SQSTM1-207ENST00000481335 C3orf67Q6ZVT6 689 aa15.72■□□□□ 0.11
SQSTM1-207ENST00000481335 PNMA8AQ86V59 439 aaPredicted RBP15.72■□□□□ 0.11
SQSTM1-207ENST00000481335 ISCA1Q9BUE6 129 aa15.72■□□□□ 0.11
SQSTM1-207ENST00000481335 HACL1Q9UJ83 578 aa15.72■□□□□ 0.11
SQSTM1-207ENST00000481335 CACNA1FO60840 1977 aa15.72■□□□□ 0.11
SQSTM1-207ENST00000481335 HSP90B1P14625 803 aaKnown RBP15.71■□□□□ 0.11
SQSTM1-207ENST00000481335 DDX46Q7L014 1031 aaKnown RBP15.71■□□□□ 0.11
SQSTM1-207ENST00000481335 RTFDC1Q9BY42 306 aaPredicted RBP15.71■□□□□ 0.11
SQSTM1-207ENST00000481335 COL4A5P29400 1685 aa15.7■□□□□ 0.1
SQSTM1-207ENST00000481335 GOLGA2Q08379 1002 aa15.7■□□□□ 0.1
SQSTM1-207ENST00000481335 GRAPQ13588 217 aa15.7■□□□□ 0.1
SQSTM1-207ENST00000481335 SP8Q8IXZ3 490 aa15.7■□□□□ 0.1
SQSTM1-207ENST00000481335 LARGE2Q8N3Y3 721 aa15.7■□□□□ 0.1
SQSTM1-207ENST00000481335 GRAPLQ8TC17 118 aaPredicted RBP15.7■□□□□ 0.1
SQSTM1-207ENST00000481335 CREBZFQ9NS37 354 aa15.7■□□□□ 0.1
SQSTM1-207ENST00000481335 HCLS1P14317 486 aaPredicted RBP15.69■□□□□ 0.1
SQSTM1-207ENST00000481335 EPHX2P34913 555 aa15.69■□□□□ 0.1
SQSTM1-207ENST00000481335 NIM1KQ8IY84 436 aa15.69■□□□□ 0.1
SQSTM1-207ENST00000481335 PASKQ96RG2 1323 aa15.68■□□□□ 0.1
SQSTM1-207ENST00000481335 TAF1P21675 1872 aa15.68■□□□□ 0.1
SQSTM1-207ENST00000481335 HTRA3P83110 453 aa15.68■□□□□ 0.1
SQSTM1-207ENST00000481335 SF3B3Q15393 1217 aaKnown RBP15.68■□□□□ 0.1
SQSTM1-207ENST00000481335 CCDC30Q5VVM6 783 aa15.68■□□□□ 0.1
SQSTM1-207ENST00000481335 PPIP5K2O43314 1243 aa15.67■□□□□ 0.1
SQSTM1-207ENST00000481335 DDX58O95786 925 aaKnown RBP15.67■□□□□ 0.1
SQSTM1-207ENST00000481335 LMOD1P29536 600 aaPredicted RBP15.67■□□□□ 0.1
SQSTM1-207ENST00000481335 DPP8Q6V1X1 898 aaPredicted RBP15.67■□□□□ 0.1
SQSTM1-207ENST00000481335 RIC3Q7Z5B4 369 aa15.67■□□□□ 0.1
SQSTM1-207ENST00000481335 LTBP1Q14766 1721 aa15.67■□□□□ 0.1
SQSTM1-207ENST00000481335 IL16Q14005 1332 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms