RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 TATP17735 454 aaPredicted RBP8.12□□□□□ -1.11
UPF3B-203ENST00000478840 CPNE3O75131 537 aaKnown RBP8.11□□□□□ -1.11
UPF3B-203ENST00000478840 ATP4AP20648 1035 aa8.11□□□□□ -1.11
UPF3B-203ENST00000478840 INPP5BP32019 993 aa8.11□□□□□ -1.11
UPF3B-203ENST00000478840 IDH3AP50213 366 aa8.11□□□□□ -1.11
UPF3B-203ENST00000478840 SF3A1Q15459 793 aaKnown RBP8.11□□□□□ -1.11
UPF3B-203ENST00000478840 C8orf34Q49A92 452 aa8.11□□□□□ -1.11
UPF3B-203ENST00000478840 NT5DC4Q86YG4 428 aa8.11□□□□□ -1.11
UPF3B-203ENST00000478840 LINC00528Q8N1L1 170 aa8.11□□□□□ -1.11
UPF3B-203ENST00000478840 TTC16Q8NEE8 873 aa8.11□□□□□ -1.11
UPF3B-203ENST00000478840 CRELD1Q96HD1 420 aa8.11□□□□□ -1.11
UPF3B-203ENST00000478840 TGIF2Q9GZN2 237 aa8.11□□□□□ -1.11
UPF3B-203ENST00000478840 FAM187AA6NFU0 413 aa8.1□□□□□ -1.11
UPF3B-203ENST00000478840 CTSOP43234 321 aaPredicted RBP8.1□□□□□ -1.11
UPF3B-203ENST00000478840 ARSDP51689 593 aa8.1□□□□□ -1.11
UPF3B-203ENST00000478840 C9orf131Q5VYM1 1079 aa8.1□□□□□ -1.11
UPF3B-203ENST00000478840 PDE12Q6L8Q7 609 aaKnown RBP8.1□□□□□ -1.11
UPF3B-203ENST00000478840 NBPF10Q6P3W6 841 aaKnown RBP8.1□□□□□ -1.11
UPF3B-203ENST00000478840 ZNF280CQ8ND82 737 aa8.1□□□□□ -1.11
UPF3B-203ENST00000478840 HPS1Q92902 700 aa8.1□□□□□ -1.11
UPF3B-203ENST00000478840 RNF34Q969K3 372 aa8.1□□□□□ -1.11
UPF3B-203ENST00000478840 AIDAQ96BJ3 306 aa8.1□□□□□ -1.11
UPF3B-203ENST00000478840 KLRG1Q96E93 195 aa8.1□□□□□ -1.11
UPF3B-203ENST00000478840 SPG7Q9UQ90 795 aa8.1□□□□□ -1.11
UPF3B-203ENST00000478840 FNDC3AQ9Y2H6 1198 aaKnown RBP8.1□□□□□ -1.11
UPF3B-203ENST00000478840 GIPC1O14908 333 aa8.09□□□□□ -1.11
UPF3B-203ENST00000478840 CTSHP09668 335 aa8.09□□□□□ -1.11
UPF3B-203ENST00000478840 ZNF76P36508 570 aa8.09□□□□□ -1.11
UPF3B-203ENST00000478840 RNF217Q8TC41 542 aa8.09□□□□□ -1.11
UPF3B-203ENST00000478840 HSH2DQ96JZ2 352 aa8.09□□□□□ -1.11
UPF3B-203ENST00000478840 POLMQ9NP87 494 aaPredicted RBP8.09□□□□□ -1.11
UPF3B-203ENST00000478840 C11orf16Q9NQ32 467 aa8.09□□□□□ -1.11
UPF3B-203ENST00000478840 A6NHS1 94 aa8.08□□□□□ -1.12
UPF3B-203ENST00000478840 TNFRSF21O75509 655 aa8.08□□□□□ -1.12
UPF3B-203ENST00000478840 UPP2O95045 317 aa8.08□□□□□ -1.12
UPF3B-203ENST00000478840 BTLAQ7Z6A9 289 aa8.08□□□□□ -1.12
UPF3B-203ENST00000478840 SNX29Q8TEQ0 813 aa8.08□□□□□ -1.12
UPF3B-203ENST00000478840 ZIC5Q96T25 663 aa8.08□□□□□ -1.12
UPF3B-203ENST00000478840 KCNMB2Q9Y691 235 aa8.08□□□□□ -1.12
UPF3B-203ENST00000478840 A0A1B0GTH6 734 aa8.07□□□□□ -1.12
UPF3B-203ENST00000478840 CAPN5O15484 640 aaPredicted RBP8.07□□□□□ -1.12
UPF3B-203ENST00000478840 PHKA2P46019 1235 aa8.07□□□□□ -1.12
UPF3B-203ENST00000478840 POU4F2Q12837 409 aa8.07□□□□□ -1.12
UPF3B-203ENST00000478840 TRIP4Q15650 581 aaPredicted RBP8.07□□□□□ -1.12
UPF3B-203ENST00000478840 SLC43A3Q8NBI5 491 aa8.07□□□□□ -1.12
UPF3B-203ENST00000478840 UBXN4Q92575 508 aa8.07□□□□□ -1.12
UPF3B-203ENST00000478840 TINF2Q9BSI4 451 aa8.07□□□□□ -1.12
UPF3B-203ENST00000478840 EIF4BP23588 611 aaKnown RBP8.06□□□□□ -1.12
UPF3B-203ENST00000478840 BICDL1Q6ZP65 573 aa8.06□□□□□ -1.12
UPF3B-203ENST00000478840 LYSMD3Q7Z3D4 306 aa8.06□□□□□ -1.12
UPF3B-203ENST00000478840 ZFYVE28Q9HCC9 887 aa8.06□□□□□ -1.12
UPF3B-203ENST00000478840 RTCBQ9Y3I0 505 aaKnown RBP8.06□□□□□ -1.12
UPF3B-203ENST00000478840 EGFRP00533 1210 aa8.05□□□□□ -1.12
UPF3B-203ENST00000478840 PTPN12Q05209 780 aaKnown RBP8.05□□□□□ -1.12
UPF3B-203ENST00000478840 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.05□□□□□ -1.12
UPF3B-203ENST00000478840 PKDCCQ504Y2 493 aa8.05□□□□□ -1.12
UPF3B-203ENST00000478840 ZNF438Q7Z4V0 828 aa8.05□□□□□ -1.12
UPF3B-203ENST00000478840 CCDC74AQ96AQ1 378 aa8.05□□□□□ -1.12
UPF3B-203ENST00000478840 C12orf49Q9H741 205 aa8.05□□□□□ -1.12
UPF3B-203ENST00000478840 ELP3Q9H9T3 547 aa8.05□□□□□ -1.12
UPF3B-203ENST00000478840 FOXD3Q9UJU5 478 aaPredicted RBP8.05□□□□□ -1.12
UPF3B-203ENST00000478840 UBAP1LF5GYI3 381 aa8.04□□□□□ -1.12
UPF3B-203ENST00000478840 ST8SIA5O15466 376 aa8.04□□□□□ -1.12
UPF3B-203ENST00000478840 EPB42P16452 691 aa8.04□□□□□ -1.12
UPF3B-203ENST00000478840 MSX1P28360 303 aa8.04□□□□□ -1.12
UPF3B-203ENST00000478840 GRNP28799 593 aaKnown RBP8.04□□□□□ -1.12
UPF3B-203ENST00000478840 TYRO3Q06418 890 aa8.04□□□□□ -1.12
UPF3B-203ENST00000478840 PRICKLE2Q7Z3G6 844 aa8.04□□□□□ -1.12
UPF3B-203ENST00000478840 OSBPL7Q9BZF2 842 aa8.04□□□□□ -1.12
UPF3B-203ENST00000478840 SRCIN1Q9C0H9 1055 aa8.04□□□□□ -1.12
UPF3B-203ENST00000478840 CRISPLD1Q9H336 500 aa8.04□□□□□ -1.12
UPF3B-203ENST00000478840 USP31Q70CQ4 1352 aa8.04□□□□□ -1.12
UPF3B-203ENST00000478840 POTECB2RU33 542 aa8.03□□□□□ -1.12
UPF3B-203ENST00000478840 USPL1Q5W0Q7 1092 aa8.03□□□□□ -1.12
UPF3B-203ENST00000478840 MRPL14Q6P1L8 145 aaKnown RBP8.03□□□□□ -1.12
UPF3B-203ENST00000478840 LRRC69Q6ZNQ3 347 aa8.03□□□□□ -1.12
UPF3B-203ENST00000478840 CMTR1Q8N1G2 835 aaKnown RBP8.03□□□□□ -1.12
UPF3B-203ENST00000478840 CCSER2Q9H7U1 834 aa8.03□□□□□ -1.12
UPF3B-203ENST00000478840 NEUROD4Q9HD90 331 aa8.03□□□□□ -1.12
UPF3B-203ENST00000478840 TIMMDC1Q9NPL8 285 aa8.03□□□□□ -1.12
UPF3B-203ENST00000478840 USP20Q9Y2K6 914 aa8.03□□□□□ -1.12
UPF3B-203ENST00000478840 A0A1W2PNR3 127 aa8.02□□□□□ -1.13
UPF3B-203ENST00000478840 BMP2P12643 396 aa8.02□□□□□ -1.13
UPF3B-203ENST00000478840 ST13P50502 369 aaKnown RBP8.02□□□□□ -1.13
UPF3B-203ENST00000478840 ARSJQ5FYB0 599 aaPredicted RBP8.02□□□□□ -1.13
UPF3B-203ENST00000478840 SAMD5Q5TGI4 173 aa8.02□□□□□ -1.13
UPF3B-203ENST00000478840 EPS8L3Q8TE67 593 aaKnown RBP8.02□□□□□ -1.13
UPF3B-203ENST00000478840 GMLQ99445 158 aa8.02□□□□□ -1.13
UPF3B-203ENST00000478840 CHRDQ9H2X0 955 aa8.02□□□□□ -1.13
UPF3B-203ENST00000478840 NLRP2Q9NX02 1062 aa8.02□□□□□ -1.13
UPF3B-203ENST00000478840 TMEM63CQ9P1W3 806 aa8.02□□□□□ -1.13
UPF3B-203ENST00000478840 DDX41Q9UJV9 622 aaKnown RBP8.02□□□□□ -1.13
UPF3B-203ENST00000478840 PHACTR2O75167 634 aa8.01□□□□□ -1.13
UPF3B-203ENST00000478840 DGAT1O75907 488 aa8.01□□□□□ -1.13
UPF3B-203ENST00000478840 AVPP01185 164 aa8.01□□□□□ -1.13
UPF3B-203ENST00000478840 NLRP8Q86W28 1048 aa8.01□□□□□ -1.13
UPF3B-203ENST00000478840 GALNT12Q8IXK2 581 aa8.01□□□□□ -1.13
UPF3B-203ENST00000478840 FAM8A1Q9UBU6 413 aa8.01□□□□□ -1.13
UPF3B-203ENST00000478840 DACH1Q9UI36 760 aa8.01□□□□□ -1.13
UPF3B-203ENST00000478840 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 2133.6 ms