RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 CNKSR1Q969H4 720 aa20.05■□□□□ 0.8
HMGA1-206ENST00000478214 ISCA1Q9BUE6 129 aa20.05■□□□□ 0.8
HMGA1-206ENST00000478214 ZNF219Q9P2Y4 722 aaPredicted RBP20.05■□□□□ 0.8
HMGA1-206ENST00000478214 DLEC1Q9Y238 1755 aa20.05■□□□□ 0.8
HMGA1-206ENST00000478214 ARFGEF1Q9Y6D6 1849 aa20.04■□□□□ 0.8
HMGA1-206ENST00000478214 SLC4A2P04920 1241 aa20.03■□□□□ 0.8
HMGA1-206ENST00000478214 CRY2Q49AN0 593 aa20.03■□□□□ 0.8
HMGA1-206ENST00000478214 PRPF40BQ6NWY9 871 aaKnown RBP20.03■□□□□ 0.8
HMGA1-206ENST00000478214 C3orf67Q6ZVT6 689 aa20.03■□□□□ 0.8
HMGA1-206ENST00000478214 G2E3Q7L622 706 aa20.03■□□□□ 0.8
HMGA1-206ENST00000478214 SYNE4Q8N205 404 aa20.03■□□□□ 0.8
HMGA1-206ENST00000478214 TRMT112Q9UI30 125 aaKnown RBP20.03■□□□□ 0.8
HMGA1-206ENST00000478214 RIC1Q4ADV7 1423 aa20.02■□□□□ 0.8
HMGA1-206ENST00000478214 C21orf2O43822 256 aa20.02■□□□□ 0.8
HMGA1-206ENST00000478214 DDX58O95786 925 aaKnown RBP20.02■□□□□ 0.8
HMGA1-206ENST00000478214 TNRC6CQ9HCJ0 1690 aaKnown RBP20.02■□□□□ 0.8
HMGA1-206ENST00000478214 RNF123Q5XPI4 1314 aa20.02■□□□□ 0.79
HMGA1-206ENST00000478214 RASSF7Q02833 373 aa20.01■□□□□ 0.79
HMGA1-206ENST00000478214 TRIM28Q13263 835 aaKnown RBP20.01■□□□□ 0.79
HMGA1-206ENST00000478214 SLC10A5Q5PT55 438 aa20.01■□□□□ 0.79
HMGA1-206ENST00000478214 MYD88Q99836 296 aa20.01■□□□□ 0.79
HMGA1-206ENST00000478214 ANKRD36CQ5JPF3 1778 aa20■□□□□ 0.79
HMGA1-206ENST00000478214 ADCY9O60503 1353 aa20■□□□□ 0.79
HMGA1-206ENST00000478214 E9PSI1 815 aa20■□□□□ 0.79
HMGA1-206ENST00000478214 HCLS1P14317 486 aaPredicted RBP20■□□□□ 0.79
HMGA1-206ENST00000478214 MAP3K2Q9Y2U5 619 aa20■□□□□ 0.79
HMGA1-206ENST00000478214 SH3TC1Q8TE82 1336 aa20■□□□□ 0.79
HMGA1-206ENST00000478214 PI4KAP2A4QPH2 592 aa19.99■□□□□ 0.79
HMGA1-206ENST00000478214 SLFN5Q08AF3 891 aa19.99■□□□□ 0.79
HMGA1-206ENST00000478214 C9orf131Q5VYM1 1079 aa19.99■□□□□ 0.79
HMGA1-206ENST00000478214 KSR2Q6VAB6 950 aa19.99■□□□□ 0.79
HMGA1-206ENST00000478214 PI4KAP1Q8N8J0 262 aa19.99■□□□□ 0.79
HMGA1-206ENST00000478214 C7orf43Q8WVR3 580 aa19.99■□□□□ 0.79
HMGA1-206ENST00000478214 RPGRQ92834 1020 aaKnown RBP19.99■□□□□ 0.79
HMGA1-206ENST00000478214 CDCA7LQ96GN5 454 aa19.99■□□□□ 0.79
HMGA1-206ENST00000478214 NLRP3Q96P20 1036 aa19.99■□□□□ 0.79
HMGA1-206ENST00000478214 METTL22Q9BUU2 404 aaPredicted RBP19.99■□□□□ 0.79
HMGA1-206ENST00000478214 SLX4Q8IY92 1834 aa19.98■□□□□ 0.79
HMGA1-206ENST00000478214 NFKBIEO00221 500 aa19.98■□□□□ 0.79
HMGA1-206ENST00000478214 ALDH1B1P30837 517 aa19.98■□□□□ 0.79
HMGA1-206ENST00000478214 HOXA10P31260 410 aaPredicted RBP19.98■□□□□ 0.79
HMGA1-206ENST00000478214 FLIIQ13045 1269 aa19.98■□□□□ 0.79
HMGA1-206ENST00000478214 FAM89AQ96GI7 184 aa19.98■□□□□ 0.79
HMGA1-206ENST00000478214 ARFGEF2Q9Y6D5 1785 aa19.98■□□□□ 0.79
HMGA1-206ENST00000478214 RTL5Q5HYW3 569 aaPredicted RBP19.97■□□□□ 0.79
HMGA1-206ENST00000478214 PRELPP51888 382 aa19.96■□□□□ 0.79
HMGA1-206ENST00000478214 OLFM4Q6UX06 510 aa19.96■□□□□ 0.79
HMGA1-206ENST00000478214 RNF181Q9P0P0 153 aa19.96■□□□□ 0.79
HMGA1-206ENST00000478214 FKBP5Q13451 457 aaPredicted RBP19.95■□□□□ 0.78
HMGA1-206ENST00000478214 CCDC191Q8NCU4 936 aa19.95■□□□□ 0.78
HMGA1-206ENST00000478214 RBM17Q96I25 401 aaKnown RBP19.95■□□□□ 0.78
HMGA1-206ENST00000478214 CRAMP1Q96RY5 1269 aa19.95■□□□□ 0.78
HMGA1-206ENST00000478214 CWC25Q9NXE8 425 aaPredicted RBP19.95■□□□□ 0.78
HMGA1-206ENST00000478214 IGKV5-2P06315 115 aa19.94■□□□□ 0.78
HMGA1-206ENST00000478214 SOGA3Q5TF21 947 aa19.94■□□□□ 0.78
HMGA1-206ENST00000478214 LMNB1P20700 586 aa19.93■□□□□ 0.78
HMGA1-206ENST00000478214 NEXNQ0ZGT2 675 aa19.93■□□□□ 0.78
HMGA1-206ENST00000478214 CCDC93Q567U6 631 aa19.93■□□□□ 0.78
HMGA1-206ENST00000478214 TRMT2AQ8IZ69 625 aaKnown RBP19.93■□□□□ 0.78
HMGA1-206ENST00000478214 ZBTB38Q8NAP3 1195 aaPredicted RBP19.93■□□□□ 0.78
HMGA1-206ENST00000478214 ZNF526Q8TF50 670 aaPredicted RBP19.93■□□□□ 0.78
HMGA1-206ENST00000478214 JARID2Q92833 1246 aaPredicted RBP19.93■□□□□ 0.78
HMGA1-206ENST00000478214 IRS4O14654 1257 aaPredicted RBP19.92■□□□□ 0.78
HMGA1-206ENST00000478214 SLC51AQ86UW1 340 aa19.92■□□□□ 0.78
HMGA1-206ENST00000478214 TAOK3Q9H2K8 898 aa19.92■□□□□ 0.78
HMGA1-206ENST00000478214 CACNA1SQ13698 1873 aa19.92■□□□□ 0.78
HMGA1-206ENST00000478214 PCCAP05165 728 aaPredicted RBP19.91■□□□□ 0.78
HMGA1-206ENST00000478214 CWF19L2Q2TBE0 894 aaKnown RBP19.91■□□□□ 0.78
HMGA1-206ENST00000478214 DNAAF4Q8WXU2 420 aa19.91■□□□□ 0.78
HMGA1-206ENST00000478214 ABCC4O15439 1325 aa19.91■□□□□ 0.78
HMGA1-206ENST00000478214 LTBP3Q9NS15 1303 aa19.91■□□□□ 0.78
HMGA1-206ENST00000478214 NEURL1BA8MQ27 555 aa19.9■□□□□ 0.78
HMGA1-206ENST00000478214 PPEF1O14829 653 aaPredicted RBP19.9■□□□□ 0.78
HMGA1-206ENST00000478214 F6X3S4 739 aa19.89■□□□□ 0.77
HMGA1-206ENST00000478214 SF3B3Q15393 1217 aaKnown RBP19.89■□□□□ 0.77
HMGA1-206ENST00000478214 DDX46Q7L014 1031 aaKnown RBP19.89■□□□□ 0.77
HMGA1-206ENST00000478214 GPBP1L1Q9HC44 474 aaPredicted RBP19.89■□□□□ 0.77
HMGA1-206ENST00000478214 HNRNPUQ00839 825 aaKnown RBP eCLIP19.88■□□□□ 0.77
HMGA1-206ENST00000478214 RTKN2Q8IZC4 609 aa19.88■□□□□ 0.77
HMGA1-206ENST00000478214 MRPL50Q8N5N7 158 aaKnown RBP19.88■□□□□ 0.77
HMGA1-206ENST00000478214 SBF1O95248 1867 aa19.88■□□□□ 0.77
HMGA1-206ENST00000478214 FER1L6Q2WGJ9 1857 aa19.88■□□□□ 0.77
HMGA1-206ENST00000478214 FKBP4Q02790 459 aaKnown RBP eCLIP19.87■□□□□ 0.77
HMGA1-206ENST00000478214 GRAPQ13588 217 aa19.87■□□□□ 0.77
HMGA1-206ENST00000478214 CC2D2BQ6DHV5 1058 aa19.87■□□□□ 0.77
HMGA1-206ENST00000478214 LINS1Q8NG48 757 aa19.87■□□□□ 0.77
HMGA1-206ENST00000478214 GRAPLQ8TC17 118 aaPredicted RBP19.87■□□□□ 0.77
HMGA1-206ENST00000478214 SSH1Q8WYL5 1049 aa19.87■□□□□ 0.77
HMGA1-206ENST00000478214 DDX60Q8IY21 1712 aaKnown RBP19.87■□□□□ 0.77
HMGA1-206ENST00000478214 SNED1Q8TER0 1413 aa19.86■□□□□ 0.77
HMGA1-206ENST00000478214 LAMB2P55268 1798 aa19.86■□□□□ 0.77
HMGA1-206ENST00000478214 BBOX1O75936 387 aa19.86■□□□□ 0.77
HMGA1-206ENST00000478214 HSP90B1P14625 803 aaKnown RBP19.86■□□□□ 0.77
HMGA1-206ENST00000478214 GCKRQ14397 625 aa19.86■□□□□ 0.77
HMGA1-206ENST00000478214 ZNF277Q9NRM2 450 aaPredicted RBP19.86■□□□□ 0.77
HMGA1-206ENST00000478214 ATP6V0A2Q9Y487 856 aa19.86■□□□□ 0.77
HMGA1-206ENST00000478214 CDHR2Q9BYE9 1310 aa19.85■□□□□ 0.77
HMGA1-206ENST00000478214 CACNA1FO60840 1977 aa19.85■□□□□ 0.77
HMGA1-206ENST00000478214 PDE8AO60658 829 aa19.85■□□□□ 0.77
HMGA1-206ENST00000478214 BCL2L13Q9BXK5 485 aa19.85■□□□□ 0.77
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