RNA–Protein interactions for RNA: ENST00000476183.2

LIME1-204, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5

Gene LIME1, Length 809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-204ENST00000476183 RIC1Q4ADV7 1423 aa27.38■■□□□ 1.97
LIME1-204ENST00000476183 FER1L6Q2WGJ9 1857 aa27.37■■□□□ 1.97
LIME1-204ENST00000476183 UTP14AQ9BVJ6 771 aaKnown RBP27.37■■□□□ 1.97
LIME1-204ENST00000476183 PHAXQ9H814 394 aaKnown RBP27.37■■□□□ 1.97
LIME1-204ENST00000476183 C3orf67Q6ZVT6 689 aa27.36■■□□□ 1.97
LIME1-204ENST00000476183 WDR63Q8IWG1 891 aa27.36■■□□□ 1.97
LIME1-204ENST00000476183 C7orf43Q8WVR3 580 aa27.36■■□□□ 1.97
LIME1-204ENST00000476183 CCDC88AQ3V6T2 1871 aa27.36■■□□□ 1.97
LIME1-204ENST00000476183 ZNF428Q96B54 188 aa27.34■■□□□ 1.97
LIME1-204ENST00000476183 FANCIQ9NVI1 1328 aa27.34■■□□□ 1.97
LIME1-204ENST00000476183 LMNB1P20700 586 aa27.33■■□□□ 1.97
LIME1-204ENST00000476183 SLC10A5Q5PT55 438 aa27.33■■□□□ 1.97
LIME1-204ENST00000476183 CCDC30Q5VVM6 783 aa27.33■■□□□ 1.97
LIME1-204ENST00000476183 SYNE4Q8N205 404 aa27.33■■□□□ 1.97
LIME1-204ENST00000476183 ISCA1Q9BUE6 129 aa27.33■■□□□ 1.97
LIME1-204ENST00000476183 SPINK5Q9NQ38 1064 aaPredicted RBP27.33■■□□□ 1.97
LIME1-204ENST00000476183 OLFM4Q6UX06 510 aa27.32■■□□□ 1.96
LIME1-204ENST00000476183 ATP5J2-PTCD1G3V325 749 aa27.31■■□□□ 1.96
LIME1-204ENST00000476183 TWISTNBQ3B726 338 aaPredicted RBP27.31■■□□□ 1.96
LIME1-204ENST00000476183 TCERG1O14776 1098 aaKnown RBP27.3■■□□□ 1.96
LIME1-204ENST00000476183 ALDH1B1P30837 517 aa27.3■■□□□ 1.96
LIME1-204ENST00000476183 HOXA10P31260 410 aaPredicted RBP27.3■■□□□ 1.96
LIME1-204ENST00000476183 C1QTNF8P60827 252 aa27.3■■□□□ 1.96
LIME1-204ENST00000476183 TRMT112Q9UI30 125 aaKnown RBP27.3■■□□□ 1.96
LIME1-204ENST00000476183 RNF123Q5XPI4 1314 aa27.3■■□□□ 1.96
LIME1-204ENST00000476183 GOLGA2Q08379 1002 aa27.29■■□□□ 1.96
LIME1-204ENST00000476183 SOGA3Q5TF21 947 aa27.29■■□□□ 1.96
LIME1-204ENST00000476183 LTBP3Q9NS15 1303 aa27.29■■□□□ 1.96
LIME1-204ENST00000476183 HCLS1P14317 486 aaPredicted RBP27.28■■□□□ 1.96
LIME1-204ENST00000476183 RIC3Q7Z5B4 369 aa27.28■■□□□ 1.96
LIME1-204ENST00000476183 RPGRQ92834 1020 aaKnown RBP27.28■■□□□ 1.96
LIME1-204ENST00000476183 NLRP3Q96P20 1036 aa27.28■■□□□ 1.96
LIME1-204ENST00000476183 CHMP4AQ9BY43 222 aa27.28■■□□□ 1.96
LIME1-204ENST00000476183 TAOK3Q9H2K8 898 aa27.28■■□□□ 1.96
LIME1-204ENST00000476183 LAMB2P55268 1798 aa27.27■■□□□ 1.96
LIME1-204ENST00000476183 SH3TC1Q8TE82 1336 aa27.27■■□□□ 1.96
LIME1-204ENST00000476183 KIF3CO14782 793 aa27.27■■□□□ 1.96
LIME1-204ENST00000476183 CCDC93Q567U6 631 aa27.27■■□□□ 1.96
LIME1-204ENST00000476183 TIAM2Q8IVF5 1701 aa27.27■■□□□ 1.96
LIME1-204ENST00000476183 TRIM28Q13263 835 aaKnown RBP27.26■■□□□ 1.95
LIME1-204ENST00000476183 NMRK2Q9NPI5 230 aa27.26■■□□□ 1.95
LIME1-204ENST00000476183 DICER1Q9UPY3 1922 aaKnown RBP27.26■■□□□ 1.95
LIME1-204ENST00000476183 ZNF521Q96K83 1311 aa27.25■■□□□ 1.95
LIME1-204ENST00000476183 ZC3H4Q9UPT8 1303 aaKnown RBP27.25■■□□□ 1.95
LIME1-204ENST00000476183 EXOSC9Q06265 439 aaKnown RBP27.25■■□□□ 1.95
LIME1-204ENST00000476183 SLC51AQ86UW1 340 aa27.25■■□□□ 1.95
LIME1-204ENST00000476183 RBM17Q96I25 401 aaKnown RBP27.25■■□□□ 1.95
LIME1-204ENST00000476183 CRAMP1Q96RY5 1269 aa27.25■■□□□ 1.95
LIME1-204ENST00000476183 STK31Q9BXU1 1019 aa27.24■■□□□ 1.95
LIME1-204ENST00000476183 DDX60Q8IY21 1712 aaKnown RBP27.24■■□□□ 1.95
LIME1-204ENST00000476183 SNED1Q8TER0 1413 aa27.24■■□□□ 1.95
LIME1-204ENST00000476183 VAMP4O75379 141 aa27.23■■□□□ 1.95
LIME1-204ENST00000476183 G2E3Q7L622 706 aa27.23■■□□□ 1.95
LIME1-204ENST00000476183 FAM89AQ96GI7 184 aa27.23■■□□□ 1.95
LIME1-204ENST00000476183 MYD88Q99836 296 aa27.23■■□□□ 1.95
LIME1-204ENST00000476183 CCER2I3L3R5 266 aa27.21■■□□□ 1.95
LIME1-204ENST00000476183 DDX58O95786 925 aaKnown RBP27.21■■□□□ 1.95
LIME1-204ENST00000476183 SLC4A2P04920 1241 aa27.21■■□□□ 1.95
LIME1-204ENST00000476183 FKBP4Q02790 459 aaKnown RBP eCLIP27.21■■□□□ 1.951e-6■■□□□ 11.7
LIME1-204ENST00000476183 RTKN2Q8IZC4 609 aa27.21■■□□□ 1.95
LIME1-204ENST00000476183 METTL22Q9BUU2 404 aaPredicted RBP27.21■■□□□ 1.95
LIME1-204ENST00000476183 ABCC4O15439 1325 aa27.2■■□□□ 1.95
LIME1-204ENST00000476183 RTL5Q5HYW3 569 aaPredicted RBP27.2■■□□□ 1.94
LIME1-204ENST00000476183 MAP3K2Q9Y2U5 619 aa27.2■■□□□ 1.94
LIME1-204ENST00000476183 KDM2BQ8NHM5 1336 aa27.19■■□□□ 1.94
LIME1-204ENST00000476183 PI4KAP2A4QPH2 592 aa27.19■■□□□ 1.94
LIME1-204ENST00000476183 PPEF1O14829 653 aaPredicted RBP27.19■■□□□ 1.94
LIME1-204ENST00000476183 KSR2Q6VAB6 950 aa27.19■■□□□ 1.94
LIME1-204ENST00000476183 PI4KAP1Q8N8J0 262 aa27.19■■□□□ 1.94
LIME1-204ENST00000476183 MYH16Q9H6N6 1097 aa27.19■■□□□ 1.94
LIME1-204ENST00000476183 ZNF277Q9NRM2 450 aaPredicted RBP27.19■■□□□ 1.94
LIME1-204ENST00000476183 GLTPD2A6NH11 291 aa27.18■■□□□ 1.94
LIME1-204ENST00000476183 TAF1P21675 1872 aa27.17■■□□□ 1.94
LIME1-204ENST00000476183 CC2D2BQ6DHV5 1058 aa27.16■■□□□ 1.94
LIME1-204ENST00000476183 ZBTB38Q8NAP3 1195 aaPredicted RBP27.16■■□□□ 1.94
LIME1-204ENST00000476183 CCDC191Q8NCU4 936 aa27.16■■□□□ 1.94
LIME1-204ENST00000476183 RRAGCQ9HB90 399 aa27.16■■□□□ 1.94
LIME1-204ENST00000476183 CACNA1FO60840 1977 aa27.16■■□□□ 1.94
LIME1-204ENST00000476183 IRS4O14654 1257 aaPredicted RBP27.15■■□□□ 1.94
LIME1-204ENST00000476183 IGKV5-2P06315 115 aa27.15■■□□□ 1.94
LIME1-204ENST00000476183 FLIIQ13045 1269 aa27.15■■□□□ 1.94
LIME1-204ENST00000476183 PSMD1Q99460 953 aa27.15■■□□□ 1.94
LIME1-204ENST00000476183 SF3B3Q15393 1217 aaKnown RBP27.14■■□□□ 1.94
LIME1-204ENST00000476183 DDX46Q7L014 1031 aaKnown RBP27.14■■□□□ 1.94
LIME1-204ENST00000476183 JARID2Q92833 1246 aaPredicted RBP27.14■■□□□ 1.94
LIME1-204ENST00000476183 CWC25Q9NXE8 425 aaPredicted RBP27.14■■□□□ 1.94
LIME1-204ENST00000476183 ATP6V0A2Q9Y487 856 aa27.14■■□□□ 1.94
LIME1-204ENST00000476183 COL4A1P02462 1669 aa27.12■■□□□ 1.93
LIME1-204ENST00000476183 BBOX1O75936 387 aa27.12■■□□□ 1.93
LIME1-204ENST00000476183 PCCAP05165 728 aaPredicted RBP27.12■■□□□ 1.93
LIME1-204ENST00000476183 IARSP41252 1262 aaKnown RBP27.12■■□□□ 1.93
LIME1-204ENST00000476183 GRAPQ13588 217 aa27.12■■□□□ 1.93
LIME1-204ENST00000476183 GRAPLQ8TC17 118 aaPredicted RBP27.12■■□□□ 1.93
LIME1-204ENST00000476183 TOMM70O94826 608 aa27.1■■□□□ 1.93
LIME1-204ENST00000476183 CWF19L2Q2TBE0 894 aaKnown RBP27.1■■□□□ 1.93
LIME1-204ENST00000476183 GRIPAP1Q4V328 841 aa27.1■■□□□ 1.93
LIME1-204ENST00000476183 COL4A5P29400 1685 aa27.09■■□□□ 1.93
LIME1-204ENST00000476183 POTECB2RU33 542 aa27.09■■□□□ 1.93
LIME1-204ENST00000476183 FKBP5Q13451 457 aaPredicted RBP27.09■■□□□ 1.93
LIME1-204ENST00000476183 DPY19L2Q6NUT2 758 aa27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms