RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 LAMB2P55268 1798 aa18.4■□□□□ 0.54
UPF3A-204ENST00000475218 HDGFL1Q5TGJ6 251 aa18.4■□□□□ 0.54
UPF3A-204ENST00000475218 DUSP27Q5VZP5 1158 aa18.4■□□□□ 0.54
UPF3A-204ENST00000475218 CCDC93Q567U6 631 aa18.39■□□□□ 0.53
UPF3A-204ENST00000475218 SOGA3Q5TF21 947 aa18.39■□□□□ 0.53
UPF3A-204ENST00000475218 SYNE4Q8N205 404 aa18.39■□□□□ 0.53
UPF3A-204ENST00000475218 RBM46Q8TBY0 533 aaKnown RBP18.39■□□□□ 0.53
UPF3A-204ENST00000475218 IFT57Q9NWB7 429 aa18.39■□□□□ 0.53
UPF3A-204ENST00000475218 PARP10Q53GL7 1025 aa18.38■□□□□ 0.53
UPF3A-204ENST00000475218 NLRP10Q86W26 655 aa18.38■□□□□ 0.53
UPF3A-204ENST00000475218 SLC10A5Q5PT55 438 aa18.37■□□□□ 0.53
UPF3A-204ENST00000475218 COL4A5P29400 1685 aa18.37■□□□□ 0.53
UPF3A-204ENST00000475218 ALDH1B1P30837 517 aa18.37■□□□□ 0.53
UPF3A-204ENST00000475218 FKBP4Q02790 459 aaKnown RBP eCLIP18.37■□□□□ 0.53
UPF3A-204ENST00000475218 TCIRG1Q13488 830 aa18.37■□□□□ 0.53
UPF3A-204ENST00000475218 PPP1R42Q7Z4L9 355 aa18.37■□□□□ 0.53
UPF3A-204ENST00000475218 C8orf58Q8NAV2 365 aa18.36■□□□□ 0.53
UPF3A-204ENST00000475218 UTP14AQ9BVJ6 771 aaKnown RBP18.36■□□□□ 0.53
UPF3A-204ENST00000475218 ZNF277Q9NRM2 450 aaPredicted RBP18.36■□□□□ 0.53
UPF3A-204ENST00000475218 DBF4Q9UBU7 674 aaPredicted RBP18.36■□□□□ 0.53
UPF3A-204ENST00000475218 ZNF428Q96B54 188 aa18.35■□□□□ 0.53
UPF3A-204ENST00000475218 DDX60Q8IY21 1712 aaKnown RBP18.35■□□□□ 0.53
UPF3A-204ENST00000475218 VEGFAP15692 232 aaPredicted RBP18.35■□□□□ 0.53
UPF3A-204ENST00000475218 GNAI1P63096 354 aa18.35■□□□□ 0.53
UPF3A-204ENST00000475218 CRAMP1Q96RY5 1269 aa18.35■□□□□ 0.53
UPF3A-204ENST00000475218 ELL2O00472 640 aaPredicted RBP18.34■□□□□ 0.53
UPF3A-204ENST00000475218 DDNO94850 711 aaPredicted RBP18.34■□□□□ 0.53
UPF3A-204ENST00000475218 PLBD2Q8NHP8 589 aa18.34■□□□□ 0.53
UPF3A-204ENST00000475218 RPGRQ92834 1020 aaKnown RBP18.34■□□□□ 0.53
UPF3A-204ENST00000475218 TAF1P21675 1872 aa18.33■□□□□ 0.53
UPF3A-204ENST00000475218 HSP90AB3PQ58FF7 597 aa18.33■□□□□ 0.53
UPF3A-204ENST00000475218 C16orf71Q8IYS4 520 aaPredicted RBP18.33■□□□□ 0.53
UPF3A-204ENST00000475218 RTKN2Q8IZC4 609 aa18.33■□□□□ 0.53
UPF3A-204ENST00000475218 ISCA1Q9BUE6 129 aa18.33■□□□□ 0.53
UPF3A-204ENST00000475218 RNF123Q5XPI4 1314 aa18.33■□□□□ 0.52
UPF3A-204ENST00000475218 HCLS1P14317 486 aaPredicted RBP18.32■□□□□ 0.52
UPF3A-204ENST00000475218 FSTL1Q12841 308 aa18.32■□□□□ 0.52
UPF3A-204ENST00000475218 ANKRD13DQ6ZTN6 518 aa18.32■□□□□ 0.52
UPF3A-204ENST00000475218 TSPYL6Q8N831 410 aa18.32■□□□□ 0.52
UPF3A-204ENST00000475218 ZNF541Q9H0D2 1346 aa18.32■□□□□ 0.52
UPF3A-204ENST00000475218 COL4A1P02462 1669 aa18.32■□□□□ 0.52
UPF3A-204ENST00000475218 ABCC4O15439 1325 aa18.32■□□□□ 0.52
UPF3A-204ENST00000475218 CALD1Q05682 793 aaKnown RBP18.32■□□□□ 0.52
UPF3A-204ENST00000475218 DNAJC5GQ8N7S2 189 aa18.32■□□□□ 0.52
UPF3A-204ENST00000475218 NLRP3Q96P20 1036 aa18.32■□□□□ 0.52
UPF3A-204ENST00000475218 PSMD1Q99460 953 aa18.32■□□□□ 0.52
UPF3A-204ENST00000475218 PHAXQ9H814 394 aaKnown RBP18.32■□□□□ 0.52
UPF3A-204ENST00000475218 MRS2Q9HD23 443 aa18.32■□□□□ 0.52
UPF3A-204ENST00000475218 HYPKQ9NX55 129 aa18.32■□□□□ 0.52
UPF3A-204ENST00000475218 APLP1P51693 650 aa18.31■□□□□ 0.52
UPF3A-204ENST00000475218 HTRA3P83110 453 aa18.31■□□□□ 0.52
UPF3A-204ENST00000475218 CCDC27Q2M243 656 aa18.31■□□□□ 0.52
UPF3A-204ENST00000475218 DPY19L2Q6NUT2 758 aa18.31■□□□□ 0.52
UPF3A-204ENST00000475218 WWC1Q8IX03 1113 aa18.31■□□□□ 0.52
UPF3A-204ENST00000475218 TSR2Q969E8 191 aaKnown RBP18.31■□□□□ 0.52
UPF3A-204ENST00000475218 RBM17Q96I25 401 aaKnown RBP18.31■□□□□ 0.52
UPF3A-204ENST00000475218 ATP5J2-PTCD1G3V325 749 aa18.3■□□□□ 0.52
UPF3A-204ENST00000475218 PPEF1O14829 653 aaPredicted RBP18.3■□□□□ 0.52
UPF3A-204ENST00000475218 IARSP41252 1262 aaKnown RBP18.3■□□□□ 0.52
UPF3A-204ENST00000475218 TRMT112Q9UI30 125 aaKnown RBP18.3■□□□□ 0.52
UPF3A-204ENST00000475218 SH3TC1Q8TE82 1336 aa18.3■□□□□ 0.52
UPF3A-204ENST00000475218 FZD9O00144 591 aa18.29■□□□□ 0.52
UPF3A-204ENST00000475218 TCERG1O14776 1098 aaKnown RBP18.29■□□□□ 0.52
UPF3A-204ENST00000475218 POTEIP0CG38 1075 aa18.29■□□□□ 0.52
UPF3A-204ENST00000475218 POTEJP0CG39 1038 aa18.29■□□□□ 0.52
UPF3A-204ENST00000475218 CC2D2BQ6DHV5 1058 aa18.29■□□□□ 0.52
UPF3A-204ENST00000475218 SMC1BQ8NDV3 1235 aa18.29■□□□□ 0.52
UPF3A-204ENST00000475218 L3MBTL3Q96JM7 780 aaPredicted RBP18.29■□□□□ 0.52
UPF3A-204ENST00000475218 ANP32CO43423 234 aa18.28■□□□□ 0.52
UPF3A-204ENST00000475218 TRIM28Q13263 835 aaKnown RBP18.27■□□□□ 0.52
UPF3A-204ENST00000475218 FAM89AQ96GI7 184 aa18.27■□□□□ 0.52
UPF3A-204ENST00000475218 ATP6V0A2Q9Y487 856 aa18.27■□□□□ 0.52
UPF3A-204ENST00000475218 SCN4AP35499 1836 aa18.27■□□□□ 0.51
UPF3A-204ENST00000475218 LRRC37AA6NMS7 1700 aa18.26■□□□□ 0.51
UPF3A-204ENST00000475218 PCNTO95613 3336 aa18.26■□□□□ 0.51
UPF3A-204ENST00000475218 DUOX1Q9NRD9 1551 aa18.25■□□□□ 0.51
UPF3A-204ENST00000475218 NCBP3Q53F19 620 aaKnown RBP18.25■□□□□ 0.51
UPF3A-204ENST00000475218 ADAMTSL1Q8N6G6 1762 aa18.25■□□□□ 0.51
UPF3A-204ENST00000475218 LTBP1Q14766 1721 aa18.25■□□□□ 0.51
UPF3A-204ENST00000475218 IL16Q14005 1332 aa18.24■□□□□ 0.51
UPF3A-204ENST00000475218 RTL5Q5HYW3 569 aaPredicted RBP18.24■□□□□ 0.51
UPF3A-204ENST00000475218 TAF1DQ9H5J8 278 aaPredicted RBP18.24■□□□□ 0.51
UPF3A-204ENST00000475218 GRAPQ13588 217 aa18.23■□□□□ 0.51
UPF3A-204ENST00000475218 GRIPAP1Q4V328 841 aa18.23■□□□□ 0.51
UPF3A-204ENST00000475218 CCDC30Q5VVM6 783 aa18.23■□□□□ 0.51
UPF3A-204ENST00000475218 RIC3Q7Z5B4 369 aa18.23■□□□□ 0.51
UPF3A-204ENST00000475218 GRAPLQ8TC17 118 aaPredicted RBP18.23■□□□□ 0.51
UPF3A-204ENST00000475218 RTFDC1Q9BY42 306 aaPredicted RBP18.23■□□□□ 0.51
UPF3A-204ENST00000475218 BBOX1O75936 387 aa18.22■□□□□ 0.51
UPF3A-204ENST00000475218 GOLGA2Q08379 1002 aa18.22■□□□□ 0.51
UPF3A-204ENST00000475218 SF3B3Q15393 1217 aaKnown RBP18.22■□□□□ 0.51
UPF3A-204ENST00000475218 SP8Q8IXZ3 490 aa18.22■□□□□ 0.51
UPF3A-204ENST00000475218 MYD88Q99836 296 aa18.22■□□□□ 0.51
UPF3A-204ENST00000475218 FANCIQ9NVI1 1328 aa18.21■□□□□ 0.51
UPF3A-204ENST00000475218 AOC3Q16853 763 aa18.21■□□□□ 0.51
UPF3A-204ENST00000475218 TWISTNBQ3B726 338 aaPredicted RBP18.21■□□□□ 0.51
UPF3A-204ENST00000475218 DDX46Q7L014 1031 aaKnown RBP18.21■□□□□ 0.51
UPF3A-204ENST00000475218 G2E3Q7L622 706 aa18.21■□□□□ 0.51
UPF3A-204ENST00000475218 GPC2Q8N158 579 aa18.21■□□□□ 0.51
UPF3A-204ENST00000475218 LARGE2Q8N3Y3 721 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms