RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 COPS6Q7L5N1 327 aa21.28■■□□□ 1
COL9A3-208ENST00000469802 XAGE3Q8WTP9 111 aa21.28■■□□□ 1
COL9A3-208ENST00000469802 NECTIN2Q92692 538 aa21.28■■□□□ 1
COL9A3-208ENST00000469802 LAS1LQ9Y4W2 734 aaKnown RBP21.28■■□□□ 1
COL9A3-208ENST00000469802 RNF123Q5XPI4 1314 aa21.28■■□□□ 1
COL9A3-208ENST00000469802 DPY19L2Q6NUT2 758 aa21.27■■□□□ 1
COL9A3-208ENST00000469802 PPP1R42Q7Z4L9 355 aa21.27■■□□□ 1
COL9A3-208ENST00000469802 RTKN2Q8IZC4 609 aa21.27■■□□□ 1
COL9A3-208ENST00000469802 CHPF2Q9P2E5 772 aa21.27■■□□□ 1
COL9A3-208ENST00000469802 COL4A5P29400 1685 aa21.26■□□□□ 0.99
COL9A3-208ENST00000469802 APAF1O14727 1248 aa21.26■□□□□ 0.99
COL9A3-208ENST00000469802 ZEB1P37275 1124 aaPredicted RBP21.26■□□□□ 0.99
COL9A3-208ENST00000469802 C3orf67Q6ZVT6 689 aa21.26■□□□□ 0.99
COL9A3-208ENST00000469802 SMC1BQ8NDV3 1235 aa21.26■□□□□ 0.99
COL9A3-208ENST00000469802 MBIPQ9NS73 344 aa21.26■□□□□ 0.99
COL9A3-208ENST00000469802 LRRC37AA6NMS7 1700 aa21.25■□□□□ 0.99
COL9A3-208ENST00000469802 HSP90AB3PQ58FF7 597 aa21.25■□□□□ 0.99
COL9A3-208ENST00000469802 HDGFL1Q5TGJ6 251 aa21.25■□□□□ 0.99
COL9A3-208ENST00000469802 RPGRQ92834 1020 aaKnown RBP21.25■□□□□ 0.99
COL9A3-208ENST00000469802 TAF1P21675 1872 aa21.24■□□□□ 0.99
COL9A3-208ENST00000469802 SLC10A5Q5PT55 438 aa21.24■□□□□ 0.99
COL9A3-208ENST00000469802 NLRP10Q86W26 655 aa21.24■□□□□ 0.99
COL9A3-208ENST00000469802 CRAMP1Q96RY5 1269 aa21.24■□□□□ 0.99
COL9A3-208ENST00000469802 PSMD1Q99460 953 aa21.24■□□□□ 0.99
COL9A3-208ENST00000469802 UTP14AQ9BVJ6 771 aaKnown RBP21.24■□□□□ 0.99
COL9A3-208ENST00000469802 ZNF277Q9NRM2 450 aaPredicted RBP21.24■□□□□ 0.99
COL9A3-208ENST00000469802 IFT57Q9NWB7 429 aa21.24■□□□□ 0.99
COL9A3-208ENST00000469802 ADAMTSL1Q8N6G6 1762 aa21.23■□□□□ 0.99
COL9A3-208ENST00000469802 AIMP1Q12904 312 aaKnown RBP21.23■□□□□ 0.99
COL9A3-208ENST00000469802 CC2D2BQ6DHV5 1058 aa21.23■□□□□ 0.99
COL9A3-208ENST00000469802 DNAJC5GQ8N7S2 189 aa21.23■□□□□ 0.99
COL9A3-208ENST00000469802 DDNO94850 711 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-208ENST00000469802 TCIRG1Q13488 830 aa21.22■□□□□ 0.99
COL9A3-208ENST00000469802 CCDC184Q52MB2 194 aa21.22■□□□□ 0.99
COL9A3-208ENST00000469802 DUSP27Q5VZP5 1158 aa21.22■□□□□ 0.99
COL9A3-208ENST00000469802 L3MBTL3Q96JM7 780 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-208ENST00000469802 DBF4Q9UBU7 674 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-208ENST00000469802 IARSP41252 1262 aaKnown RBP21.21■□□□□ 0.99
COL9A3-208ENST00000469802 CALD1Q05682 793 aaKnown RBP21.21■□□□□ 0.99
COL9A3-208ENST00000469802 RBM17Q96I25 401 aaKnown RBP21.21■□□□□ 0.99
COL9A3-208ENST00000469802 ZNF541Q9H0D2 1346 aa21.21■□□□□ 0.99
COL9A3-208ENST00000469802 GNAI1P63096 354 aa21.2■□□□□ 0.98
COL9A3-208ENST00000469802 SLC51AQ86UW1 340 aa21.2■□□□□ 0.98
COL9A3-208ENST00000469802 SYNE4Q8N205 404 aa21.2■□□□□ 0.98
COL9A3-208ENST00000469802 PLBD2Q8NHP8 589 aa21.2■□□□□ 0.98
COL9A3-208ENST00000469802 NLRP3Q96P20 1036 aa21.2■□□□□ 0.98
COL9A3-208ENST00000469802 PPEF1O14829 653 aaPredicted RBP21.19■□□□□ 0.98
COL9A3-208ENST00000469802 GRIPAP1Q4V328 841 aa21.19■□□□□ 0.98
COL9A3-208ENST00000469802 FZD9O00144 591 aa21.18■□□□□ 0.98
COL9A3-208ENST00000469802 HYPKQ9NX55 129 aa21.18■□□□□ 0.98
COL9A3-208ENST00000469802 ABCC4O15439 1325 aa21.18■□□□□ 0.98
COL9A3-208ENST00000469802 LTBP1Q14766 1721 aa21.18■□□□□ 0.98
COL9A3-208ENST00000469802 HTRA3P83110 453 aa21.17■□□□□ 0.98
COL9A3-208ENST00000469802 ANKRD13DQ6ZTN6 518 aa21.17■□□□□ 0.98
COL9A3-208ENST00000469802 ISCA1Q9BUE6 129 aa21.17■□□□□ 0.98
COL9A3-208ENST00000469802 SH3TC1Q8TE82 1336 aa21.17■□□□□ 0.98
COL9A3-208ENST00000469802 COL4A1P02462 1669 aa21.16■□□□□ 0.98
COL9A3-208ENST00000469802 DUOX1Q9NRD9 1551 aa21.16■□□□□ 0.98
COL9A3-208ENST00000469802 TRMT112Q9UI30 125 aaKnown RBP21.16■□□□□ 0.98
COL9A3-208ENST00000469802 IQCA1LA6NCM1 817 aa21.15■□□□□ 0.98
COL9A3-208ENST00000469802 HCLS1P14317 486 aaPredicted RBP21.15■□□□□ 0.98
COL9A3-208ENST00000469802 ATP6V0A2Q9Y487 856 aa21.15■□□□□ 0.98
COL9A3-208ENST00000469802 POTEIP0CG38 1075 aa21.14■□□□□ 0.97
COL9A3-208ENST00000469802 POTEJP0CG39 1038 aa21.14■□□□□ 0.97
COL9A3-208ENST00000469802 CCDC27Q2M243 656 aa21.14■□□□□ 0.97
COL9A3-208ENST00000469802 KLRG1Q96E93 195 aa21.14■□□□□ 0.97
COL9A3-208ENST00000469802 ZNF316A6NFI3 1004 aaPredicted RBP21.13■□□□□ 0.97
COL9A3-208ENST00000469802 C8orf58Q8NAV2 365 aa21.13■□□□□ 0.97
COL9A3-208ENST00000469802 TAF1DQ9H5J8 278 aaPredicted RBP21.13■□□□□ 0.97
COL9A3-208ENST00000469802 CACNA1FO60840 1977 aa21.13■□□□□ 0.97
COL9A3-208ENST00000469802 TRIM28Q13263 835 aaKnown RBP21.12■□□□□ 0.97
COL9A3-208ENST00000469802 CHADLQ6NUI6 762 aa21.12■□□□□ 0.97
COL9A3-208ENST00000469802 GPC2Q8N158 579 aa21.12■□□□□ 0.97
COL9A3-208ENST00000469802 JDP2Q8WYK2 163 aa21.12■□□□□ 0.97
COL9A3-208ENST00000469802 ATP5J2-PTCD1G3V325 749 aa21.11■□□□□ 0.97
COL9A3-208ENST00000469802 ELL2O00472 640 aaPredicted RBP21.11■□□□□ 0.97
COL9A3-208ENST00000469802 BBOX1O75936 387 aa21.11■□□□□ 0.97
COL9A3-208ENST00000469802 JMYQ8N9B5 988 aa21.11■□□□□ 0.97
COL9A3-208ENST00000469802 RTFDC1Q9BY42 306 aaPredicted RBP21.11■□□□□ 0.97
COL9A3-208ENST00000469802 PHAXQ9H814 394 aaKnown RBP21.11■□□□□ 0.97
COL9A3-208ENST00000469802 MYH3P11055 1940 aa21.11■□□□□ 0.97
COL9A3-208ENST00000469802 TCERG1O14776 1098 aaKnown RBP21.1■□□□□ 0.97
COL9A3-208ENST00000469802 GRAPQ13588 217 aa21.1■□□□□ 0.97
COL9A3-208ENST00000469802 NCBP3Q53F19 620 aaKnown RBP21.1■□□□□ 0.97
COL9A3-208ENST00000469802 LDHDQ86WU2 507 aa21.1■□□□□ 0.97
COL9A3-208ENST00000469802 SP8Q8IXZ3 490 aa21.1■□□□□ 0.97
COL9A3-208ENST00000469802 GRAPLQ8TC17 118 aaPredicted RBP21.1■□□□□ 0.97
COL9A3-208ENST00000469802 HACL1Q9UJ83 578 aa21.1■□□□□ 0.97
COL9A3-208ENST00000469802 GOLGA2Q08379 1002 aa21.09■□□□□ 0.97
COL9A3-208ENST00000469802 DDX46Q7L014 1031 aaKnown RBP21.09■□□□□ 0.97
COL9A3-208ENST00000469802 WWC1Q8IX03 1113 aa21.09■□□□□ 0.97
COL9A3-208ENST00000469802 LARGE2Q8N3Y3 721 aa21.09■□□□□ 0.97
COL9A3-208ENST00000469802 FAM89AQ96GI7 184 aa21.09■□□□□ 0.97
COL9A3-208ENST00000469802 VPS33BQ9H267 617 aa21.09■□□□□ 0.97
COL9A3-208ENST00000469802 SF3B3Q15393 1217 aaKnown RBP21.08■□□□□ 0.97
COL9A3-208ENST00000469802 TSPYL6Q8N831 410 aa21.08■□□□□ 0.97
COL9A3-208ENST00000469802 ZNF428Q96B54 188 aa21.08■□□□□ 0.97
COL9A3-208ENST00000469802 MRS2Q9HD23 443 aa21.08■□□□□ 0.97
COL9A3-208ENST00000469802 IL16Q14005 1332 aa21.07■□□□□ 0.96
COL9A3-208ENST00000469802 EPHX2P34913 555 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms