RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 USP17L22D6RA61 530 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 USP17L17D6RBQ6 530 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 USP17L19D6RCP7 530 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 USP17L20D6RJB6 530 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 USP17L24Q0WX57 530 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 PTK7Q13308 1070 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 KANK4Q5T7N3 995 aaPredicted RBP8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 BTLAQ7Z6A9 289 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 TNFRSF25Q93038 417 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 MDFIQ99750 246 aa8.74□□□□□ -1.01
CCDC88A-210ENST00000468534 FAM229AH3BQW9 127 aa8.73□□□□□ -1.01
CCDC88A-210ENST00000468534 ALBP02768 609 aa8.73□□□□□ -1.01
CCDC88A-210ENST00000468534 ARXQ96QS3 562 aa8.73□□□□□ -1.01
CCDC88A-210ENST00000468534 STARD13Q9Y3M8 1113 aa8.73□□□□□ -1.01
CCDC88A-210ENST00000468534 A6NJR5 290 aa8.72□□□□□ -1.01
CCDC88A-210ENST00000468534 KCNQ4P56696 695 aa8.72□□□□□ -1.01
CCDC88A-210ENST00000468534 ANKMY2Q8IV38 441 aa8.72□□□□□ -1.01
CCDC88A-210ENST00000468534 STAG2Q8N3U4 1231 aa8.72□□□□□ -1.01
CCDC88A-210ENST00000468534 UBE2OQ9C0C9 1292 aaKnown RBP8.72□□□□□ -1.01
CCDC88A-210ENST00000468534 VRTNQ9H8Y1 702 aa8.72□□□□□ -1.01
CCDC88A-210ENST00000468534 SPATA31C1P0DKV0 1188 aa8.71□□□□□ -1.02
CCDC88A-210ENST00000468534 HIF1AQ16665 826 aa8.71□□□□□ -1.02
CCDC88A-210ENST00000468534 PRRT3Q5FWE3 981 aa8.71□□□□□ -1.02
CCDC88A-210ENST00000468534 MICALL1Q8N3F8 863 aa8.71□□□□□ -1.02
CCDC88A-210ENST00000468534 SPDYE3A6NKU9 549 aa8.7□□□□□ -1.02
CCDC88A-210ENST00000468534 FAM196BA6NMK8 535 aa8.7□□□□□ -1.02
CCDC88A-210ENST00000468534 DOC2BQ14184 412 aa8.7□□□□□ -1.02
CCDC88A-210ENST00000468534 RTN1Q16799 776 aa8.69□□□□□ -1.02
CCDC88A-210ENST00000468534 CDCA8Q53HL2 280 aa8.69□□□□□ -1.02
CCDC88A-210ENST00000468534 PNMA5Q96PV4 448 aa8.69□□□□□ -1.02
CCDC88A-210ENST00000468534 KLK14Q9P0G3 267 aa8.69□□□□□ -1.02
CCDC88A-210ENST00000468534 ZNF777Q9ULD5 760 aaPredicted RBP8.69□□□□□ -1.02
CCDC88A-210ENST00000468534 IGFBP4P22692 258 aa8.68□□□□□ -1.02
CCDC88A-210ENST00000468534 GATA4P43694 442 aa8.68□□□□□ -1.02
CCDC88A-210ENST00000468534 BCS1LQ9Y276 419 aa8.68□□□□□ -1.02
CCDC88A-210ENST00000468534 TGFBR3LH3BV60 316 aa8.67□□□□□ -1.02
CCDC88A-210ENST00000468534 APBA3O96018 575 aa8.67□□□□□ -1.02
CCDC88A-210ENST00000468534 COL9A3Q14050 684 aaPredicted RBP8.67□□□□□ -1.02
CCDC88A-210ENST00000468534 NUDT8Q8WV74 236 aa8.67□□□□□ -1.02
CCDC88A-210ENST00000468534 SLC6A14Q9UN76 642 aa8.67□□□□□ -1.02
CCDC88A-210ENST00000468534 NFKB1P19838 968 aa8.66□□□□□ -1.02
CCDC88A-210ENST00000468534 RFX1P22670 979 aa8.66□□□□□ -1.02
CCDC88A-210ENST00000468534 TRIM28Q13263 835 aaKnown RBP8.66□□□□□ -1.02
CCDC88A-210ENST00000468534 DGKZQ13574 1117 aa8.66□□□□□ -1.02
CCDC88A-210ENST00000468534 CFAP70Q5T0N1 1121 aa8.66□□□□□ -1.02
CCDC88A-210ENST00000468534 VTI1AQ96AJ9 217 aa8.66□□□□□ -1.02
CCDC88A-210ENST00000468534 JPH1Q9HDC5 661 aaPredicted RBP8.66□□□□□ -1.02
CCDC88A-210ENST00000468534 PRDM6Q9NQX0 595 aa8.66□□□□□ -1.02
CCDC88A-210ENST00000468534 LILRB5O75023 590 aa8.65□□□□□ -1.02
CCDC88A-210ENST00000468534 NID1P14543 1247 aa8.65□□□□□ -1.02
CCDC88A-210ENST00000468534 GRIK4Q16099 956 aa8.65□□□□□ -1.02
CCDC88A-210ENST00000468534 TRAPPC3LQ5T215 181 aa8.65□□□□□ -1.02
CCDC88A-210ENST00000468534 IER5Q5VY09 327 aa8.65□□□□□ -1.02
CCDC88A-210ENST00000468534 C20orf204Q6ZNR8 217 aa8.65□□□□□ -1.02
CCDC88A-210ENST00000468534 KRT25Q7Z3Z0 450 aa8.65□□□□□ -1.02
CCDC88A-210ENST00000468534 GSX2Q9BZM3 304 aa8.65□□□□□ -1.02
CCDC88A-210ENST00000468534 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.65□□□□□ -1.02
CCDC88A-210ENST00000468534 IDH3AP50213 366 aa8.64□□□□□ -1.03
CCDC88A-210ENST00000468534 CCINQ13939 588 aa8.64□□□□□ -1.03
CCDC88A-210ENST00000468534 DNAJB12Q9NXW2 375 aaKnown RBP8.64□□□□□ -1.03
CCDC88A-210ENST00000468534 EPB42P16452 691 aa8.63□□□□□ -1.03
CCDC88A-210ENST00000468534 FAM200AQ8TCP9 573 aa8.63□□□□□ -1.03
CCDC88A-210ENST00000468534 SEMA6BQ9H3T3 888 aa8.63□□□□□ -1.03
CCDC88A-210ENST00000468534 QTRT2Q9H974 415 aaKnown RBP8.63□□□□□ -1.03
CCDC88A-210ENST00000468534 DMGDHQ9UI17 866 aaKnown RBP8.63□□□□□ -1.03
CCDC88A-210ENST00000468534 GRNP28799 593 aaKnown RBP8.62□□□□□ -1.03
CCDC88A-210ENST00000468534 PSAPL1Q6NUJ1 521 aa8.62□□□□□ -1.03
CCDC88A-210ENST00000468534 NAGPAQ9UK23 515 aa8.62□□□□□ -1.03
CCDC88A-210ENST00000468534 FOXO3O43524 673 aa8.61□□□□□ -1.03
CCDC88A-210ENST00000468534 WEE1P30291 646 aa8.61□□□□□ -1.03
CCDC88A-210ENST00000468534 INPP5BP32019 993 aa8.61□□□□□ -1.03
CCDC88A-210ENST00000468534 XP32Q5T750 250 aa8.61□□□□□ -1.03
CCDC88A-210ENST00000468534 CPB1P15086 417 aa8.6□□□□□ -1.03
CCDC88A-210ENST00000468534 ARSDP51689 593 aa8.6□□□□□ -1.03
CCDC88A-210ENST00000468534 NACC1Q96RE7 527 aa8.6□□□□□ -1.03
CCDC88A-210ENST00000468534 EFCC1Q9HA90 598 aa8.6□□□□□ -1.03
CCDC88A-210ENST00000468534 NOVA2Q9UNW9 492 aaKnown RBP8.6□□□□□ -1.03
CCDC88A-210ENST00000468534 USP20Q9Y2K6 914 aa8.6□□□□□ -1.03
CCDC88A-210ENST00000468534 A0A0A0MRY4 1105 aa8.59□□□□□ -1.03
CCDC88A-210ENST00000468534 MICAL2O94851 1124 aa8.59□□□□□ -1.03
CCDC88A-210ENST00000468534 MLLT1Q03111 559 aaPredicted RBP8.59□□□□□ -1.03
CCDC88A-210ENST00000468534 FAM35AQ86V20 835 aa8.59□□□□□ -1.03
CCDC88A-210ENST00000468534 TPSG1Q9NRR2 321 aa8.59□□□□□ -1.03
CCDC88A-210ENST00000468534 RGS9O75916 674 aaPredicted RBP8.58□□□□□ -1.04
CCDC88A-210ENST00000468534 SASH3O75995 380 aa8.58□□□□□ -1.04
CCDC88A-210ENST00000468534 TARSP26639 723 aaKnown RBP8.58□□□□□ -1.04
CCDC88A-210ENST00000468534 AFF1P51825 1210 aaKnown RBP8.58□□□□□ -1.04
CCDC88A-210ENST00000468534 C11orf91Q3C1V1 193 aa8.58□□□□□ -1.04
CCDC88A-210ENST00000468534 PRIMPOLQ96LW4 560 aa8.58□□□□□ -1.04
CCDC88A-210ENST00000468534 ZFATQ9P243 1243 aa8.58□□□□□ -1.04
CCDC88A-210ENST00000468534 PRMT3O60678 531 aa8.57□□□□□ -1.04
CCDC88A-210ENST00000468534 RARAP10276 462 aa8.57□□□□□ -1.04
CCDC88A-210ENST00000468534 ITGB7P26010 798 aa8.57□□□□□ -1.04
CCDC88A-210ENST00000468534 RAC1P63000 192 aa8.57□□□□□ -1.04
CCDC88A-210ENST00000468534 DHX32Q7L7V1 743 aaKnown RBP8.57□□□□□ -1.04
CCDC88A-210ENST00000468534 DMRTC2Q8IXT2 367 aaPredicted RBP8.57□□□□□ -1.04
CCDC88A-210ENST00000468534 IFT43Q96FT9 208 aa8.57□□□□□ -1.04
CCDC88A-210ENST00000468534 LRFN2Q9ULH4 789 aa8.57□□□□□ -1.04
CCDC88A-210ENST00000468534 FKBP5Q13451 457 aaPredicted RBP8.56□□□□□ -1.04
CCDC88A-210ENST00000468534 RSPO4Q2I0M5 234 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms