RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 RTKN2Q8IZC4 609 aa32.08■■■□□ 2.73
PTCH1-210ENST00000468211 POTEIP0CG38 1075 aa32.07■■■□□ 2.72
PTCH1-210ENST00000468211 POTEJP0CG39 1038 aa32.07■■■□□ 2.72
PTCH1-210ENST00000468211 HOXA10P31260 410 aaPredicted RBP32.07■■■□□ 2.72
PTCH1-210ENST00000468211 PRKRIP1Q9H875 184 aaPredicted RBP32.07■■■□□ 2.72
PTCH1-210ENST00000468211 ZNF541Q9H0D2 1346 aa32.06■■■□□ 2.72
PTCH1-210ENST00000468211 SCN4AP35499 1836 aa32.06■■■□□ 2.72
PTCH1-210ENST00000468211 SYNE4Q8N205 404 aa32.06■■■□□ 2.72
PTCH1-210ENST00000468211 LAS1LQ9Y4W2 734 aaKnown RBP32.06■■■□□ 2.72
PTCH1-210ENST00000468211 LAMB2P55268 1798 aa32.05■■■□□ 2.72
PTCH1-210ENST00000468211 COPS6Q7L5N1 327 aa32.05■■■□□ 2.72
PTCH1-210ENST00000468211 RPGRQ92834 1020 aaKnown RBP32.05■■■□□ 2.72
PTCH1-210ENST00000468211 AIMP1Q12904 312 aaKnown RBP32.04■■■□□ 2.72
PTCH1-210ENST00000468211 PARP10Q53GL7 1025 aa32.04■■■□□ 2.72
PTCH1-210ENST00000468211 XAGE3Q8WTP9 111 aa32.04■■■□□ 2.72
PTCH1-210ENST00000468211 COL4A5P29400 1685 aa32.03■■■□□ 2.72
PTCH1-210ENST00000468211 IARSP41252 1262 aaKnown RBP32.03■■■□□ 2.72
PTCH1-210ENST00000468211 PPP1R42Q7Z4L9 355 aa32.03■■■□□ 2.72
PTCH1-210ENST00000468211 L3MBTL3Q96JM7 780 aaPredicted RBP32.02■■■□□ 2.72
PTCH1-210ENST00000468211 JMYQ8N9B5 988 aa32.01■■■□□ 2.71
PTCH1-210ENST00000468211 IFFO2Q5TF58 517 aa32■■■□□ 2.71
PTCH1-210ENST00000468211 CRAMP1Q96RY5 1269 aa32■■■□□ 2.71
PTCH1-210ENST00000468211 PSMD1Q99460 953 aa32■■■□□ 2.71
PTCH1-210ENST00000468211 UTP14AQ9BVJ6 771 aaKnown RBP32■■■□□ 2.71
PTCH1-210ENST00000468211 DDX21Q9NR30 783 aaKnown RBP eCLIP32■■■□□ 2.71
PTCH1-210ENST00000468211 TCERG1O14776 1098 aaKnown RBP31.99■■■□□ 2.71
PTCH1-210ENST00000468211 CHADLQ6NUI6 762 aa31.99■■■□□ 2.71
PTCH1-210ENST00000468211 RBM17Q96I25 401 aaKnown RBP31.99■■■□□ 2.71
PTCH1-210ENST00000468211 CHPF2Q9P2E5 772 aa31.99■■■□□ 2.71
PTCH1-210ENST00000468211 PCNTO95613 3336 aa31.98■■■□□ 2.71
PTCH1-210ENST00000468211 FZD9O00144 591 aa31.98■■■□□ 2.71
PTCH1-210ENST00000468211 SLC10A5Q5PT55 438 aa31.98■■■□□ 2.71
PTCH1-210ENST00000468211 TAF1DQ9H5J8 278 aaPredicted RBP31.98■■■□□ 2.71
PTCH1-210ENST00000468211 CC2D2BQ6DHV5 1058 aa31.97■■■□□ 2.71
PTCH1-210ENST00000468211 NLRP10Q86W26 655 aa31.97■■■□□ 2.71
PTCH1-210ENST00000468211 NLRP3Q96P20 1036 aa31.97■■■□□ 2.71
PTCH1-210ENST00000468211 PPEF1O14829 653 aaPredicted RBP31.96■■■□□ 2.71
PTCH1-210ENST00000468211 TAF1P21675 1872 aa31.96■■■□□ 2.71
PTCH1-210ENST00000468211 IQCA1LA6NCM1 817 aa31.95■■■□□ 2.71
PTCH1-210ENST00000468211 TCIRG1Q13488 830 aa31.94■■■□□ 2.7
PTCH1-210ENST00000468211 ZNF428Q96B54 188 aa31.94■■■□□ 2.7
PTCH1-210ENST00000468211 HSP90AB3PQ58FF7 597 aa31.93■■■□□ 2.7
PTCH1-210ENST00000468211 HDGFL1Q5TGJ6 251 aa31.93■■■□□ 2.7
PTCH1-210ENST00000468211 CFAP44Q96MT7 982 aa31.93■■■□□ 2.7
PTCH1-210ENST00000468211 ADAMTSL1Q8N6G6 1762 aa31.93■■■□□ 2.7
PTCH1-210ENST00000468211 HCLS1P14317 486 aaPredicted RBP31.92■■■□□ 2.7
PTCH1-210ENST00000468211 MBIPQ9NS73 344 aa31.92■■■□□ 2.7
PTCH1-210ENST00000468211 ABCC4O15439 1325 aa31.92■■■□□ 2.7
PTCH1-210ENST00000468211 APAF1O14727 1248 aa31.91■■■□□ 2.7
PTCH1-210ENST00000468211 JDP2Q8WYK2 163 aa31.91■■■□□ 2.7
PTCH1-210ENST00000468211 HACL1Q9UJ83 578 aa31.91■■■□□ 2.7
PTCH1-210ENST00000468211 RNF123Q5XPI4 1314 aa31.91■■■□□ 2.7
PTCH1-210ENST00000468211 DDX60Q8IY21 1712 aaKnown RBP31.91■■■□□ 2.7
PTCH1-210ENST00000468211 HOXB7P09629 217 aa31.9■■■□□ 2.7
PTCH1-210ENST00000468211 LDHDQ86WU2 507 aa31.9■■■□□ 2.7
PTCH1-210ENST00000468211 LTBP1Q14766 1721 aa31.89■■■□□ 2.7
PTCH1-210ENST00000468211 ZNF853P0CG23 659 aa31.89■■■□□ 2.7
PTCH1-210ENST00000468211 DUSP27Q5VZP5 1158 aa31.89■■■□□ 2.7
PTCH1-210ENST00000468211 GPC2Q8N158 579 aa31.89■■■□□ 2.7
PTCH1-210ENST00000468211 TRMT112Q9UI30 125 aaKnown RBP31.89■■■□□ 2.7
PTCH1-210ENST00000468211 EPHX2P34913 555 aa31.88■■■□□ 2.69
PTCH1-210ENST00000468211 EAPPQ56P03 285 aaPredicted RBP31.88■■■□□ 2.69
PTCH1-210ENST00000468211 ATP6V0A2Q9Y487 856 aa31.88■■■□□ 2.69
PTCH1-210ENST00000468211 GRIPAP1Q4V328 841 aa31.87■■■□□ 2.69
PTCH1-210ENST00000468211 LARGE2Q8N3Y3 721 aa31.87■■■□□ 2.69
PTCH1-210ENST00000468211 PLBD2Q8NHP8 589 aa31.87■■■□□ 2.69
PTCH1-210ENST00000468211 DBF4Q9UBU7 674 aaPredicted RBP31.87■■■□□ 2.69
PTCH1-210ENST00000468211 SH3TC1Q8TE82 1336 aa31.86■■■□□ 2.69
PTCH1-210ENST00000468211 PASKQ96RG2 1323 aa31.86■■■□□ 2.69
PTCH1-210ENST00000468211 ANKRD13DQ6ZTN6 518 aa31.85■■■□□ 2.69
PTCH1-210ENST00000468211 GJA3Q9Y6H8 435 aa31.85■■■□□ 2.69
PTCH1-210ENST00000468211 ITGBL1O95965 494 aaPredicted RBP31.84■■■□□ 2.69
PTCH1-210ENST00000468211 EIF6P56537 245 aaKnown RBP31.84■■■□□ 2.69
PTCH1-210ENST00000468211 ISCA1Q9BUE6 129 aa31.84■■■□□ 2.69
PTCH1-210ENST00000468211 CREBZFQ9NS37 354 aa31.84■■■□□ 2.69
PTCH1-210ENST00000468211 ATP5J2-PTCD1G3V325 749 aa31.83■■■□□ 2.69
PTCH1-210ENST00000468211 CCDC184Q52MB2 194 aa31.83■■■□□ 2.69
PTCH1-210ENST00000468211 AOC3Q16853 763 aa31.82■■■□□ 2.68
PTCH1-210ENST00000468211 IFT57Q9NWB7 429 aa31.82■■■□□ 2.68
PTCH1-210ENST00000468211 HYPKQ9NX55 129 aa31.82■■■□□ 2.68
PTCH1-210ENST00000468211 CLEC11AQ9Y240 323 aa31.82■■■□□ 2.68
PTCH1-210ENST00000468211 PPIP5K2O43314 1243 aa31.81■■■□□ 2.68
PTCH1-210ENST00000468211 BBOX1O75936 387 aa31.81■■■□□ 2.68
PTCH1-210ENST00000468211 SP8Q8IXZ3 490 aa31.81■■■□□ 2.68
PTCH1-210ENST00000468211 COL4A1P02462 1669 aa31.8■■■□□ 2.68
PTCH1-210ENST00000468211 ELL2O00472 640 aaPredicted RBP31.8■■■□□ 2.68
PTCH1-210ENST00000468211 FAM89AQ96GI7 184 aa31.8■■■□□ 2.68
PTCH1-210ENST00000468211 MKRN1Q9UHC7 482 aaKnown RBP31.8■■■□□ 2.68
PTCH1-210ENST00000468211 LRRC37AA6NMS7 1700 aa31.79■■■□□ 2.68
PTCH1-210ENST00000468211 SCNN1DP51172 638 aa31.79■■■□□ 2.68
PTCH1-210ENST00000468211 DDX46Q7L014 1031 aaKnown RBP31.79■■■□□ 2.68
PTCH1-210ENST00000468211 NIM1KQ8IY84 436 aa31.79■■■□□ 2.68
PTCH1-210ENST00000468211 RTFDC1Q9BY42 306 aaPredicted RBP31.79■■■□□ 2.68
PTCH1-210ENST00000468211 TMX4Q9H1E5 349 aaPredicted RBP31.79■■■□□ 2.68
PTCH1-210ENST00000468211 GNAI1P63096 354 aa31.78■■■□□ 2.68
PTCH1-210ENST00000468211 GRAPQ13588 217 aa31.78■■■□□ 2.68
PTCH1-210ENST00000468211 MAP1SQ66K74 1059 aaPredicted RBP31.78■■■□□ 2.68
PTCH1-210ENST00000468211 PNMA8AQ86V59 439 aaPredicted RBP31.78■■■□□ 2.68
PTCH1-210ENST00000468211 GRAPLQ8TC17 118 aaPredicted RBP31.78■■■□□ 2.68
PTCH1-210ENST00000468211 PHAXQ9H814 394 aaKnown RBP31.78■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms