RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 IGHMBP2P38935 993 aaKnown RBP21.92■■□□□ 1.1
CCDC88B-204ENST00000463837 TMEM132AQ24JP5 1023 aa21.92■■□□□ 1.1
CCDC88B-204ENST00000463837 INCENPQ9NQS7 918 aa21.92■■□□□ 1.1
CCDC88B-204ENST00000463837 SEPT11Q9NVA2 429 aaKnown RBP21.92■■□□□ 1.1
CCDC88B-204ENST00000463837 PER1O15534 1290 aaPredicted RBP21.92■■□□□ 1.1
CCDC88B-204ENST00000463837 SEC24BO95487 1268 aa21.92■■□□□ 1.1
CCDC88B-204ENST00000463837 USP16Q9Y5T5 823 aa21.92■■□□□ 1.1
CCDC88B-204ENST00000463837 SHANK2Q9UPX8 1470 aa21.91■■□□□ 1.1
CCDC88B-204ENST00000463837 TUBB4BP68371 445 aa21.91■■□□□ 1.1
CCDC88B-204ENST00000463837 SLU7O95391 586 aaKnown RBP21.91■■□□□ 1.1
CCDC88B-204ENST00000463837 MAP3K12Q12852 859 aa21.91■■□□□ 1.1
CCDC88B-204ENST00000463837 ZNF287Q9HBT7 754 aa21.91■■□□□ 1.1
CCDC88B-204ENST00000463837 ORC3Q9UBD5 711 aaPredicted RBP21.91■■□□□ 1.1
CCDC88B-204ENST00000463837 ZMYM3Q14202 1370 aa21.91■■□□□ 1.1
CCDC88B-204ENST00000463837 IBSPP21815 317 aaPredicted RBP21.91■■□□□ 1.1
CCDC88B-204ENST00000463837 GNG11P61952 73 aa21.91■■□□□ 1.1
CCDC88B-204ENST00000463837 FEZ1Q99689 392 aa21.91■■□□□ 1.1
CCDC88B-204ENST00000463837 ZNF652Q9Y2D9 606 aa21.91■■□□□ 1.1
CCDC88B-204ENST00000463837 NAA15Q9BXJ9 866 aaKnown RBP21.91■■□□□ 1.1
CCDC88B-204ENST00000463837 TTC12Q9H892 705 aaPredicted RBP21.9■■□□□ 1.1
CCDC88B-204ENST00000463837 ANKRD62A6NC57 917 aa21.9■■□□□ 1.1
CCDC88B-204ENST00000463837 CTCFLQ8NI51 663 aaPredicted RBP21.9■■□□□ 1.1
CCDC88B-204ENST00000463837 ALS2CR12Q96Q35 445 aa21.9■■□□□ 1.1
CCDC88B-204ENST00000463837 USP26Q9BXU7 913 aa21.9■■□□□ 1.1
CCDC88B-204ENST00000463837 IARSP41252 1262 aaKnown RBP21.89■■□□□ 1.1
CCDC88B-204ENST00000463837 VPS36Q86VN1 386 aa21.89■■□□□ 1.1
CCDC88B-204ENST00000463837 MRPS27Q92552 414 aaKnown RBP21.89■■□□□ 1.1
CCDC88B-204ENST00000463837 KDM5BQ9UGL1 1544 aa21.89■■□□□ 1.1
CCDC88B-204ENST00000463837 TTC41PQ6P2S7 1318 aa21.89■■□□□ 1.1
CCDC88B-204ENST00000463837 TTF1Q15361 905 aaPredicted RBP21.89■■□□□ 1.09
CCDC88B-204ENST00000463837 MAP3K2Q9Y2U5 619 aa21.89■■□□□ 1.09
CCDC88B-204ENST00000463837 LMAN1P49257 510 aa21.89■■□□□ 1.09
CCDC88B-204ENST00000463837 RBM5P52756 815 aaKnown RBP eCLIP21.89■■□□□ 1.09
CCDC88B-204ENST00000463837 DACT1Q9NYF0 836 aa21.89■■□□□ 1.09
CCDC88B-204ENST00000463837 PPP1R12BO60237 982 aaPredicted RBP21.89■■□□□ 1.09
CCDC88B-204ENST00000463837 IVLP07476 585 aa21.89■■□□□ 1.09
CCDC88B-204ENST00000463837 TYRO3Q06418 890 aa21.89■■□□□ 1.09
CCDC88B-204ENST00000463837 CACNA2D4Q7Z3S7 1137 aa21.89■■□□□ 1.09
CCDC88B-204ENST00000463837 PLEKHM2Q8IWE5 1019 aa21.89■■□□□ 1.09
CCDC88B-204ENST00000463837 FAM83GA6ND36 823 aa21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 NCOA7Q8NI08 942 aa21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 CCDC12Q8WUD4 166 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 ARFGAP3Q9NP61 516 aa21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 ZNF608Q9ULD9 1512 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 ZFYVE9O95405 1425 aa21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 BLMP54132 1417 aaPredicted RBP21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 NPHP3Q7Z494 1330 aa21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 KIF20AO95235 890 aa21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 IDI1Q13907 227 aa21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 LUZP1Q86V48 1076 aa21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 CTAGE1Q96RT6 745 aa21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 UBASH3AP57075 661 aa21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 ISM2Q6H9L7 571 aa21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 FAM114A1Q8IWE2 563 aa21.88■■□□□ 1.09
CCDC88B-204ENST00000463837 SMAP1Q8IYB5 467 aaPredicted RBP21.87■■□□□ 1.09
CCDC88B-204ENST00000463837 RBM8AQ9Y5S9 174 aaKnown RBP21.87■■□□□ 1.09
CCDC88B-204ENST00000463837 ZNF445P59923 1031 aa21.87■■□□□ 1.09
CCDC88B-204ENST00000463837 CTR9Q6PD62 1173 aa21.87■■□□□ 1.09
CCDC88B-204ENST00000463837 IQCA1Q86XH1 822 aa21.87■■□□□ 1.09
CCDC88B-204ENST00000463837 CCDC82Q8N4S0 544 aa21.87■■□□□ 1.09
CCDC88B-204ENST00000463837 RAB34Q9BZG1 259 aa21.87■■□□□ 1.09
CCDC88B-204ENST00000463837 IFIT3O14879 490 aaKnown RBP21.87■■□□□ 1.09
CCDC88B-204ENST00000463837 IFIT5Q13325 482 aaKnown RBP21.87■■□□□ 1.09
CCDC88B-204ENST00000463837 ZSWIM4Q9H7M6 989 aa21.87■■□□□ 1.09
CCDC88B-204ENST00000463837 SYKP43405 635 aa21.87■■□□□ 1.09
CCDC88B-204ENST00000463837 CEP85Q6P2H3 762 aa21.87■■□□□ 1.09
CCDC88B-204ENST00000463837 VAMP4O75379 141 aa21.86■■□□□ 1.09
CCDC88B-204ENST00000463837 DNM1Q05193 864 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-204ENST00000463837 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.86■■□□□ 1.09
CCDC88B-204ENST00000463837 ALDH1L1O75891 902 aa21.86■■□□□ 1.09
CCDC88B-204ENST00000463837 CKAP4Q07065 602 aaKnown RBP21.86■■□□□ 1.09
CCDC88B-204ENST00000463837 RRAGDQ9NQL2 400 aaPredicted RBP21.86■■□□□ 1.09
CCDC88B-204ENST00000463837 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.86■■□□□ 1.098e-7■■□□□ 13.8
CCDC88B-204ENST00000463837 PPFIA3O75145 1194 aa21.86■■□□□ 1.09
CCDC88B-204ENST00000463837 PI4KAP2A4QPH2 592 aa21.86■■□□□ 1.09
CCDC88B-204ENST00000463837 PI4KAP1Q8N8J0 262 aa21.86■■□□□ 1.09
CCDC88B-204ENST00000463837 TMOD2Q9NZR1 351 aa21.86■■□□□ 1.09
CCDC88B-204ENST00000463837 NECAB1Q8N987 351 aa21.85■■□□□ 1.09
CCDC88B-204ENST00000463837 BMP15O95972 392 aa21.85■■□□□ 1.09
CCDC88B-204ENST00000463837 TMOD3Q9NYL9 352 aa21.85■■□□□ 1.09
CCDC88B-204ENST00000463837 OGFRQ9NZT2 677 aa21.85■■□□□ 1.09
CCDC88B-204ENST00000463837 A0A087WZG4 1122 aa21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 DNA2P51530 1060 aa21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 C8orf58Q8NAV2 365 aa21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 METAP2P50579 478 aaKnown RBP eCLIP21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 BRF1Q92994 677 aa21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 TNNQ9UQP3 1299 aa21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 GBP2P32456 591 aaPredicted RBP21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 SEC63Q9UGP8 760 aaKnown RBP21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 NUP153P49790 1475 aaKnown RBP21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 GOLIM4O00461 696 aa21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 POLR3DP05423 398 aaPredicted RBP21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 DNAJC25Q9H1X3 360 aa21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 PHF8Q9UPP1 1060 aa21.84■■□□□ 1.09
CCDC88B-204ENST00000463837 ZFYP08048 801 aaPredicted RBP21.83■■□□□ 1.09
CCDC88B-204ENST00000463837 RNF187Q5TA31 235 aaPredicted RBP21.83■■□□□ 1.09
CCDC88B-204ENST00000463837 ZSCAN29Q8IWY8 852 aaPredicted RBP21.83■■□□□ 1.09
CCDC88B-204ENST00000463837 ANKRD24Q8TF21 1146 aa21.83■■□□□ 1.09
CCDC88B-204ENST00000463837 SOS1Q07889 1333 aaPredicted RBP21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms