RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	KRT24	Q2M2I5	525 aa		13.93	□□□□□ -0.18
RBM39-223	ENST00000463004	MAP4K4	O95819	1239 aa	Predicted RBP	13.92	□□□□□ -0.18
RBM39-223	ENST00000463004	HMGN5	P82970	282 aa	Known RBP	13.92	□□□□□ -0.18
RBM39-223	ENST00000463004	BRINP3	Q76B58	766 aa		13.92	□□□□□ -0.18
RBM39-223	ENST00000463004	USP19	O94966	1318 aa		13.92	□□□□□ -0.18
RBM39-223	ENST00000463004	KDM2B	Q8NHM5	1336 aa		13.92	□□□□□ -0.18
RBM39-223	ENST00000463004	FBXO3	Q9UK99	471 aa		13.92	□□□□□ -0.18
RBM39-223	ENST00000463004	TPM2	P07951	284 aa		13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	TMOD2	Q9NZR1	351 aa		13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	DCC	P43146	1447 aa		13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	KDR	P35968	1356 aa		13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	GSTO1	P78417	241 aa		13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	ANKRD2	Q9GZV1	360 aa		13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	SDS	P20132	328 aa		13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	KRT85	P78386	507 aa		13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	ANKRD20A12P	Q8NF67	263 aa		13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	NAPB	Q9H115	298 aa		13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	PHAX	Q9H814	394 aa	Known RBP	13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	SLIT1	O75093	1534 aa		13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	ZNF496	Q96IT1	587 aa	Predicted RBP	13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	CFAP45	Q9UL16	551 aa		13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	LIMCH1	Q9UPQ0	1083 aa		13.91	□□□□□ -0.18
RBM39-223	ENST00000463004	C1orf167	Q5SNV9	1468 aa		13.9	□□□□□ -0.18
RBM39-223	ENST00000463004	SASS6	Q6UVJ0	657 aa		13.9	□□□□□ -0.18
RBM39-223	ENST00000463004	CCDC87	Q9NVE4	849 aa		13.9	□□□□□ -0.18
RBM39-223	ENST00000463004	G2E3	Q7L622	706 aa		13.9	□□□□□ -0.18
RBM39-223	ENST00000463004	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.9	□□□□□ -0.18
RBM39-223	ENST00000463004	ANKIB1	Q9P2G1	1089 aa		13.9	□□□□□ -0.18
RBM39-223	ENST00000463004	SH3TC1	Q8TE82	1336 aa		13.9	□□□□□ -0.18
RBM39-223	ENST00000463004	CAST	P20810	708 aa	Known RBP	13.9	□□□□□ -0.18
RBM39-223	ENST00000463004	NAT10	Q9H0A0	1025 aa	Known RBP	13.9	□□□□□ -0.18
RBM39-223	ENST00000463004	IRS4	O14654	1257 aa	Predicted RBP	13.9	□□□□□ -0.19
RBM39-223	ENST00000463004	LARP1B	Q659C4	914 aa	Known RBP	13.9	□□□□□ -0.19
RBM39-223	ENST00000463004	CCDC178	Q5BJE1	867 aa		13.89	□□□□□ -0.19
RBM39-223	ENST00000463004	DZIP1	Q86YF9	867 aa	Known RBP	13.89	□□□□□ -0.19
RBM39-223	ENST00000463004	ABCF2	Q9UG63	623 aa		13.89	□□□□□ -0.19
RBM39-223	ENST00000463004	ZNF213	O14771	459 aa		13.89	□□□□□ -0.19
RBM39-223	ENST00000463004	BAG3	O95817	575 aa		13.89	□□□□□ -0.19
RBM39-223	ENST00000463004	RRP12	Q5JTH9	1297 aa	Known RBP	13.89	□□□□□ -0.19
RBM39-223	ENST00000463004	PPP4R3B	Q5MIZ7	849 aa		13.89	□□□□□ -0.19
RBM39-223	ENST00000463004	PRPF40B	Q6NWY9	871 aa	Known RBP	13.89	□□□□□ -0.19
RBM39-223	ENST00000463004	ACSBG1	Q96GR2	724 aa		13.89	□□□□□ -0.19
RBM39-223	ENST00000463004	ESYT1	Q9BSJ8	1104 aa		13.89	□□□□□ -0.19
RBM39-223	ENST00000463004	SNX21	Q969T3	373 aa		13.89	□□□□□ -0.19
RBM39-223	ENST00000463004	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.89	□□□□□ -0.19
RBM39-223	ENST00000463004	GCKR	Q14397	625 aa		13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	MYO3A	Q8NEV4	1616 aa		13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	OVOS2	A0A0J9YW53	1432 aa		13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	TPM1	P09493	284 aa		13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	OVOS2	Q6IE36	1432 aa		13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	NOL7	Q9UMY1	257 aa	Known RBP	13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	PDE8A	O60658	829 aa		13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	DHX8	Q14562	1220 aa	Known RBP	13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	PLEKHM2	Q8IWE5	1019 aa		13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	EYA2	O00167	538 aa		13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	TPD52L1	Q16890	204 aa	Predicted RBP	13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	USP21	Q9UK80	565 aa		13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	ARHGAP23	Q9P227	1491 aa		13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	RIMS1	Q86UR5	1692 aa	Known RBP	13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	CPS1	P31327	1500 aa		13.88	□□□□□ -0.19
RBM39-223	ENST00000463004	TRAK2	O60296	914 aa		13.87	□□□□□ -0.19
RBM39-223	ENST00000463004	GNAT2	P19087	354 aa		13.87	□□□□□ -0.19
RBM39-223	ENST00000463004	CWF19L2	Q2TBE0	894 aa	Known RBP	13.87	□□□□□ -0.19
RBM39-223	ENST00000463004	VSIG10	Q8N0Z9	540 aa		13.87	□□□□□ -0.19
RBM39-223	ENST00000463004	FER1L4	A9Z1Z3	1794 aa		13.87	□□□□□ -0.19
RBM39-223	ENST00000463004	MRE11	P49959	708 aa		13.87	□□□□□ -0.19
RBM39-223	ENST00000463004	GOLIM4	O00461	696 aa		13.87	□□□□□ -0.19
RBM39-223	ENST00000463004	TXLNA	P40222	546 aa		13.87	□□□□□ -0.19
RBM39-223	ENST00000463004	IQCA1	Q86XH1	822 aa		13.87	□□□□□ -0.19
RBM39-223	ENST00000463004	DDX17	Q92841	729 aa	Known RBP	13.87	□□□□□ -0.19
RBM39-223	ENST00000463004	MCMDC2	Q4G0Z9	681 aa		13.86	□□□□□ -0.19
RBM39-223	ENST00000463004	VPS53	Q5VIR6	699 aa		13.86	□□□□□ -0.19
RBM39-223	ENST00000463004	DCAF8L1	A6NGE4	600 aa		13.86	□□□□□ -0.19
RBM39-223	ENST00000463004	KIN	O60870	393 aa	Known RBP	13.86	□□□□□ -0.19
RBM39-223	ENST00000463004	TCIRG1	Q13488	830 aa		13.86	□□□□□ -0.19
RBM39-223	ENST00000463004	TRAPPC3L	Q5T215	181 aa		13.86	□□□□□ -0.19
RBM39-223	ENST00000463004	BICC1	Q9H694	974 aa	Known RBP	13.86	□□□□□ -0.19
RBM39-223	ENST00000463004	TNN	Q9UQP3	1299 aa		13.86	□□□□□ -0.19
RBM39-223	ENST00000463004	SSH3	Q8TE77	659 aa		13.86	□□□□□ -0.19
RBM39-223	ENST00000463004	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.86	□□□□□ -0.19
RBM39-223	ENST00000463004	STK38	Q15208	465 aa		13.85	□□□□□ -0.19
RBM39-223	ENST00000463004	CERS3	Q8IU89	383 aa		13.85	□□□□□ -0.19
RBM39-223	ENST00000463004	TCEAL9	Q9UHQ7	104 aa		13.85	□□□□□ -0.19
RBM39-223	ENST00000463004	PRIM1	P49642	420 aa	Known RBP	13.85	□□□□□ -0.19
RBM39-223	ENST00000463004	TMTC2	Q8N394	836 aa		13.85	□□□□□ -0.19
RBM39-223	ENST00000463004	MROH2A	A6NES4	1674 aa		13.85	□□□□□ -0.19
RBM39-223	ENST00000463004	USP5	P45974	858 aa		13.85	□□□□□ -0.19
RBM39-223	ENST00000463004	CNNM2	Q9H8M5	875 aa		13.85	□□□□□ -0.19
RBM39-223	ENST00000463004	TRPC5	Q9UL62	973 aa	Predicted RBP	13.85	□□□□□ -0.19
RBM39-223	ENST00000463004	FLAD1	Q8NFF5	587 aa		13.85	□□□□□ -0.19
RBM39-223	ENST00000463004	CCNL1	Q9UK58	526 aa	Predicted RBP	13.85	□□□□□ -0.19
RBM39-223	ENST00000463004	TSR1	Q2NL82	804 aa	Known RBP	13.84	□□□□□ -0.19
RBM39-223	ENST00000463004	PIP4K2A	P48426	406 aa	Predicted RBP	13.84	□□□□□ -0.19
RBM39-223	ENST00000463004	SOGA3	Q5TF21	947 aa		13.84	□□□□□ -0.19
RBM39-223	ENST00000463004	DNAJC10	Q8IXB1	793 aa		13.84	□□□□□ -0.19
RBM39-223	ENST00000463004	C8orf34	Q49A92	452 aa		13.84	□□□□□ -0.19
RBM39-223	ENST00000463004	GLIPR1L2	Q4G1C9	344 aa		13.84	□□□□□ -0.19
RBM39-223	ENST00000463004	NEURL1B	A8MQ27	555 aa		13.83	□□□□□ -0.19
RBM39-223	ENST00000463004	NCOA7	Q8NI08	942 aa		13.83	□□□□□ -0.19

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