RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 STARD3NLO95772 234 aa16.32■□□□□ 0.2
HDAC4-207ENST00000461113 GPC2Q8N158 579 aa16.32■□□□□ 0.2
HDAC4-207ENST00000461113 NGEFQ8N5V2 710 aa16.32■□□□□ 0.2
HDAC4-207ENST00000461113 SLX4Q8IY92 1834 aa16.31■□□□□ 0.2
HDAC4-207ENST00000461113 THSD7BQ9C0I4 1608 aa16.31■□□□□ 0.2
HDAC4-207ENST00000461113 TRAF5O00463 557 aa16.31■□□□□ 0.2
HDAC4-207ENST00000461113 CA12O43570 354 aa16.31■□□□□ 0.2
HDAC4-207ENST00000461113 TLL2Q9Y6L7 1015 aa16.31■□□□□ 0.2
HDAC4-207ENST00000461113 IARSP41252 1262 aaKnown RBP16.3■□□□□ 0.2
HDAC4-207ENST00000461113 ZNF790Q6PG37 636 aa16.3■□□□□ 0.2
HDAC4-207ENST00000461113 FMNL2Q96PY5 1086 aa16.3■□□□□ 0.2
HDAC4-207ENST00000461113 NPR1P16066 1061 aa16.29■□□□□ 0.2
HDAC4-207ENST00000461113 NCBP3Q53F19 620 aaKnown RBP16.29■□□□□ 0.2
HDAC4-207ENST00000461113 RTKN2Q8IZC4 609 aa16.29■□□□□ 0.2
HDAC4-207ENST00000461113 SYNE4Q8N205 404 aa16.29■□□□□ 0.2
HDAC4-207ENST00000461113 THUMPD2Q9BTF0 503 aaKnown RBP16.29■□□□□ 0.2
HDAC4-207ENST00000461113 TEX13AQ9BXU3 409 aaPredicted RBP16.29■□□□□ 0.2
HDAC4-207ENST00000461113 BABAM1Q9NWV8 329 aa16.29■□□□□ 0.2
HDAC4-207ENST00000461113 LAS1LQ9Y4W2 734 aaKnown RBP16.29■□□□□ 0.2
HDAC4-207ENST00000461113 GJA3Q9Y6H8 435 aa16.29■□□□□ 0.2
HDAC4-207ENST00000461113 LTBP1Q14766 1721 aa16.28■□□□□ 0.2
HDAC4-207ENST00000461113 LMOD1P29536 600 aaPredicted RBP16.28■□□□□ 0.2
HDAC4-207ENST00000461113 EPS15P42566 896 aa16.28■□□□□ 0.2
HDAC4-207ENST00000461113 SOX10P56693 466 aa16.28■□□□□ 0.2
HDAC4-207ENST00000461113 TSPYL4Q9UJ04 414 aa16.28■□□□□ 0.2
HDAC4-207ENST00000461113 CAMTA2O94983 1202 aa16.27■□□□□ 0.2
HDAC4-207ENST00000461113 CCDC27Q2M243 656 aa16.27■□□□□ 0.2
HDAC4-207ENST00000461113 PRPF38BQ5VTL8 546 aaKnown RBP16.27■□□□□ 0.2
HDAC4-207ENST00000461113 JDP2Q8WYK2 163 aa16.27■□□□□ 0.2
HDAC4-207ENST00000461113 TRIM35Q9UPQ4 493 aa16.27■□□□□ 0.2
HDAC4-207ENST00000461113 MRC1P22897 1456 aa16.27■□□□□ 0.19
HDAC4-207ENST00000461113 IL6STP40189 918 aaPredicted RBP16.26■□□□□ 0.19
HDAC4-207ENST00000461113 BRPF1P55201 1214 aaPredicted RBP16.26■□□□□ 0.19
HDAC4-207ENST00000461113 SAPCD2Q86UD0 394 aa16.26■□□□□ 0.19
HDAC4-207ENST00000461113 NBPF5PQ86XG9 351 aaPredicted RBP16.26■□□□□ 0.19
HDAC4-207ENST00000461113 SALL2Q9Y467 1007 aaPredicted RBP16.26■□□□□ 0.19
HDAC4-207ENST00000461113 EIF6P56537 245 aaKnown RBP16.25■□□□□ 0.19
HDAC4-207ENST00000461113 GNAI1P63096 354 aa16.25■□□□□ 0.19
HDAC4-207ENST00000461113 CIAPIN1Q6FI81 312 aa16.25■□□□□ 0.19
HDAC4-207ENST00000461113 NPM2Q86SE8 214 aaKnown RBP16.25■□□□□ 0.19
HDAC4-207ENST00000461113 MIS18AQ9NYP9 233 aa16.25■□□□□ 0.19
HDAC4-207ENST00000461113 SCN11AQ9UI33 1791 aa16.25■□□□□ 0.19
HDAC4-207ENST00000461113 PDE4DIPQ5VU43 2346 aa16.24■□□□□ 0.19
HDAC4-207ENST00000461113 CELF2O95319 508 aaKnown RBP16.24■□□□□ 0.19
HDAC4-207ENST00000461113 A1BGP04217 495 aa16.24■□□□□ 0.19
HDAC4-207ENST00000461113 SNRPA1P09661 255 aaKnown RBP16.24■□□□□ 0.19
HDAC4-207ENST00000461113 SCNN1DP51172 638 aa16.24■□□□□ 0.19
HDAC4-207ENST00000461113 USP50Q70EL3 339 aaPredicted RBP16.24■□□□□ 0.19
HDAC4-207ENST00000461113 ZNF496Q96IT1 587 aaPredicted RBP16.24■□□□□ 0.19
HDAC4-207ENST00000461113 KLRG2A4D1S0 409 aaPredicted RBP16.23■□□□□ 0.19
HDAC4-207ENST00000461113 WWC1Q8IX03 1113 aa16.23■□□□□ 0.19
HDAC4-207ENST00000461113 IFT57Q9NWB7 429 aa16.23■□□□□ 0.19
HDAC4-207ENST00000461113 SCN7AQ01118 1682 aa16.22■□□□□ 0.19
HDAC4-207ENST00000461113 DZIP3Q86Y13 1208 aaKnown RBP16.22■□□□□ 0.19
HDAC4-207ENST00000461113 WDR63Q8IWG1 891 aa16.22■□□□□ 0.19
HDAC4-207ENST00000461113 HEG1Q9ULI3 1381 aa16.22■□□□□ 0.19
HDAC4-207ENST00000461113 CHL1O00533 1208 aa16.21■□□□□ 0.19
HDAC4-207ENST00000461113 KCNQ3O43525 872 aa16.21■□□□□ 0.19
HDAC4-207ENST00000461113 HHIPL1Q96JK4 782 aa16.21■□□□□ 0.19
HDAC4-207ENST00000461113 ZIC5Q96T25 663 aa16.21■□□□□ 0.19
HDAC4-207ENST00000461113 PSMD1Q99460 953 aa16.21■□□□□ 0.19
HDAC4-207ENST00000461113 ALDH1B1P30837 517 aa16.2■□□□□ 0.18
HDAC4-207ENST00000461113 CHMP4AQ9BY43 222 aa16.2■□□□□ 0.18
HDAC4-207ENST00000461113 IL16Q14005 1332 aa16.19■□□□□ 0.18
HDAC4-207ENST00000461113 CACNA1SQ13698 1873 aa16.19■□□□□ 0.18
HDAC4-207ENST00000461113 ARFGEF2Q9Y6D5 1785 aa16.19■□□□□ 0.18
HDAC4-207ENST00000461113 FAM177BA6PVY3 158 aa16.19■□□□□ 0.18
HDAC4-207ENST00000461113 EIF4A1P60842 406 aaKnown RBP16.19■□□□□ 0.18
HDAC4-207ENST00000461113 TPTE2Q6XPS3 522 aa16.19■□□□□ 0.18
HDAC4-207ENST00000461113 GLIS2Q9BZE0 524 aaPredicted RBP16.19■□□□□ 0.18
HDAC4-207ENST00000461113 ZNF408Q9H9D4 720 aa16.19■□□□□ 0.18
HDAC4-207ENST00000461113 CASP8AP2Q9UKL3 1982 aa16.18■□□□□ 0.18
HDAC4-207ENST00000461113 COL4A5P29400 1685 aa16.18■□□□□ 0.18
HDAC4-207ENST00000461113 PIP4K2AP48426 406 aaPredicted RBP16.18■□□□□ 0.18
HDAC4-207ENST00000461113 LARGE2Q8N3Y3 721 aa16.18■□□□□ 0.18
HDAC4-207ENST00000461113 MYH16Q9H6N6 1097 aa16.18■□□□□ 0.18
HDAC4-207ENST00000461113 NOGQ13253 232 aa16.17■□□□□ 0.18
HDAC4-207ENST00000461113 CLEC4GQ6UXB4 293 aa16.17■□□□□ 0.18
HDAC4-207ENST00000461113 ADARB2Q9NS39 739 aaKnown RBP16.17■□□□□ 0.18
HDAC4-207ENST00000461113 SNED1Q8TER0 1413 aa16.17■□□□□ 0.18
HDAC4-207ENST00000461113 MBIPQ9NS73 344 aa16.16■□□□□ 0.18
HDAC4-207ENST00000461113 NIP7Q9Y221 180 aaKnown RBP eCLIP16.16■□□□□ 0.18
HDAC4-207ENST00000461113 ZNF652Q9Y2D9 606 aa16.16■□□□□ 0.18
HDAC4-207ENST00000461113 ZNF853P0CG23 659 aa16.15■□□□□ 0.18
HDAC4-207ENST00000461113 GOLGA2Q08379 1002 aa16.15■□□□□ 0.18
HDAC4-207ENST00000461113 GPRC5DQ9NZD1 345 aa16.15■□□□□ 0.18
HDAC4-207ENST00000461113 DLG5Q8TDM6 1919 aa16.15■□□□□ 0.18
HDAC4-207ENST00000461113 UBR2Q8IWV8 1755 aa16.14■□□□□ 0.17
HDAC4-207ENST00000461113 HOXB7P09629 217 aa16.14■□□□□ 0.17
HDAC4-207ENST00000461113 GTF2E1P29083 439 aaPredicted RBP16.14■□□□□ 0.17
HDAC4-207ENST00000461113 HNRNPUQ00839 825 aaKnown RBP eCLIP16.14■□□□□ 0.17
HDAC4-207ENST00000461113 CC2D2BQ6DHV5 1058 aa16.14■□□□□ 0.17
HDAC4-207ENST00000461113 NIM1KQ8IY84 436 aa16.14■□□□□ 0.17
HDAC4-207ENST00000461113 USP16Q9Y5T5 823 aa16.14■□□□□ 0.17
HDAC4-207ENST00000461113 EIF2S2P20042 333 aaKnown RBP16.13■□□□□ 0.17
HDAC4-207ENST00000461113 HUNKP57058 714 aa16.13■□□□□ 0.17
HDAC4-207ENST00000461113 SLC51AQ86UW1 340 aa16.13■□□□□ 0.17
HDAC4-207ENST00000461113 E9PSI1 815 aa16.12■□□□□ 0.17
HDAC4-207ENST00000461113 DUSP27Q5VZP5 1158 aa16.12■□□□□ 0.17
HDAC4-207ENST00000461113 SAGE1Q9NXZ1 904 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms