RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 RIPK4P57078 832 aa28.3■■■□□ 2.12
CPNE1-220ENST00000458038 PARP10Q53GL7 1025 aa28.3■■■□□ 2.12
CPNE1-220ENST00000458038 PNMA8AQ86V59 439 aaPredicted RBP28.3■■■□□ 2.12
CPNE1-220ENST00000458038 CRAMP1Q96RY5 1269 aa28.3■■■□□ 2.12
CPNE1-220ENST00000458038 UBN2Q6ZU65 1347 aa28.29■■■□□ 2.12
CPNE1-220ENST00000458038 ZNF541Q9H0D2 1346 aa28.29■■■□□ 2.12
CPNE1-220ENST00000458038 SUSD4Q5VX71 490 aa28.29■■■□□ 2.12
CPNE1-220ENST00000458038 GPC2Q8N158 579 aa28.29■■■□□ 2.12
CPNE1-220ENST00000458038 RBM17Q96I25 401 aaKnown RBP28.29■■■□□ 2.12
CPNE1-220ENST00000458038 PASKQ96RG2 1323 aa28.28■■■□□ 2.12
CPNE1-220ENST00000458038 HSPA1AP0DMV8 641 aaKnown RBP28.28■■■□□ 2.12
CPNE1-220ENST00000458038 HSPA1BP0DMV9 641 aaKnown RBP28.28■■■□□ 2.12
CPNE1-220ENST00000458038 SNED1Q8TER0 1413 aa28.27■■■□□ 2.12
CPNE1-220ENST00000458038 NTSR2O95665 410 aa28.26■■■□□ 2.11
CPNE1-220ENST00000458038 EPHX2P34913 555 aa28.26■■■□□ 2.11
CPNE1-220ENST00000458038 NLRP3Q96P20 1036 aa28.25■■■□□ 2.11
CPNE1-220ENST00000458038 RNF123Q5XPI4 1314 aa28.24■■■□□ 2.11
CPNE1-220ENST00000458038 TMPOP42166 694 aaKnown RBP28.24■■■□□ 2.11
CPNE1-220ENST00000458038 EIF6P56537 245 aaKnown RBP28.24■■■□□ 2.11
CPNE1-220ENST00000458038 EAPPQ56P03 285 aaPredicted RBP28.24■■■□□ 2.11
CPNE1-220ENST00000458038 LRP10Q7Z4F1 713 aa28.24■■■□□ 2.11
CPNE1-220ENST00000458038 TMX4Q9H1E5 349 aaPredicted RBP28.24■■■□□ 2.11
CPNE1-220ENST00000458038 CLEC11AQ9Y240 323 aa28.24■■■□□ 2.11
CPNE1-220ENST00000458038 ITGBL1O95965 494 aaPredicted RBP28.23■■■□□ 2.11
CPNE1-220ENST00000458038 EIF2S2P20042 333 aaKnown RBP28.23■■■□□ 2.11
CPNE1-220ENST00000458038 PDIA6Q15084 440 aa28.23■■■□□ 2.11
CPNE1-220ENST00000458038 SLC10A5Q5PT55 438 aa28.23■■■□□ 2.11
CPNE1-220ENST00000458038 TNS4Q8IZW8 715 aa28.23■■■□□ 2.11
CPNE1-220ENST00000458038 TMEM88BA6NKF7 163 aa28.22■■■□□ 2.11
CPNE1-220ENST00000458038 HSP90AB3PQ58FF7 597 aa28.22■■■□□ 2.11
CPNE1-220ENST00000458038 UTP14AQ9BVJ6 771 aaKnown RBP28.22■■■□□ 2.11
CPNE1-220ENST00000458038 VPS33BQ9H267 617 aa28.22■■■□□ 2.11
CPNE1-220ENST00000458038 MKRN1Q9UHC7 482 aaKnown RBP28.22■■■□□ 2.11
CPNE1-220ENST00000458038 CNTNAP1P78357 1384 aa28.22■■■□□ 2.11
CPNE1-220ENST00000458038 PPEF1O14829 653 aaPredicted RBP28.21■■■□□ 2.11
CPNE1-220ENST00000458038 ADAMTSL1Q8N6G6 1762 aa28.2■■■□□ 2.11
CPNE1-220ENST00000458038 LARGE2Q8N3Y3 721 aa28.2■■■□□ 2.1
CPNE1-220ENST00000458038 LMOD1P29536 600 aaPredicted RBP28.18■■■□□ 2.1
CPNE1-220ENST00000458038 CNTROBQ8N137 903 aa28.18■■■□□ 2.1
CPNE1-220ENST00000458038 ATP6V0A2Q9Y487 856 aa28.17■■■□□ 2.1
CPNE1-220ENST00000458038 MYBBP1AQ9BQG0 1328 aaKnown RBP28.17■■■□□ 2.1
CPNE1-220ENST00000458038 PROSER3Q2NL68 480 aa28.16■■■□□ 2.1
CPNE1-220ENST00000458038 COPS6Q7L5N1 327 aa28.16■■■□□ 2.1
CPNE1-220ENST00000458038 GJA3Q9Y6H8 435 aa28.16■■■□□ 2.1
CPNE1-220ENST00000458038 ANKRD36CQ5JPF3 1778 aa28.15■■■□□ 2.1
CPNE1-220ENST00000458038 CHL1O00533 1208 aa28.15■■■□□ 2.1
CPNE1-220ENST00000458038 BBOX1O75936 387 aa28.15■■■□□ 2.1
CPNE1-220ENST00000458038 NIM1KQ8IY84 436 aa28.15■■■□□ 2.1
CPNE1-220ENST00000458038 SUPT20HQ8NEM7 779 aa28.15■■■□□ 2.1
CPNE1-220ENST00000458038 DDX21Q9NR30 783 aaKnown RBP eCLIP28.15■■■□□ 2.1
CPNE1-220ENST00000458038 C3orf67Q6ZVT6 689 aa28.14■■■□□ 2.1
CPNE1-220ENST00000458038 ANXA1P04083 346 aa28.13■■■□□ 2.09
CPNE1-220ENST00000458038 TCIRG1Q13488 830 aa28.13■■■□□ 2.09
CPNE1-220ENST00000458038 XAGE3Q8WTP9 111 aa28.13■■■□□ 2.09
CPNE1-220ENST00000458038 RUNDC1Q96C34 613 aa28.13■■■□□ 2.09
CPNE1-220ENST00000458038 TCERG1O14776 1098 aaKnown RBP28.12■■■□□ 2.09
CPNE1-220ENST00000458038 PPIP5K2O43314 1243 aa28.12■■■□□ 2.09
CPNE1-220ENST00000458038 MAP1SQ66K74 1059 aaPredicted RBP28.12■■■□□ 2.09
CPNE1-220ENST00000458038 NLRP10Q86W26 655 aa28.12■■■□□ 2.09
CPNE1-220ENST00000458038 COL4A5P29400 1685 aa28.12■■■□□ 2.09
CPNE1-220ENST00000458038 HOXB7P09629 217 aa28.11■■■□□ 2.09
CPNE1-220ENST00000458038 AIMP1Q12904 312 aaKnown RBP28.11■■■□□ 2.09
CPNE1-220ENST00000458038 WDR43Q15061 677 aaKnown RBP eCLIP28.11■■■□□ 2.09
CPNE1-220ENST00000458038 NEUROD2Q15784 382 aa28.11■■■□□ 2.09
CPNE1-220ENST00000458038 USP50Q70EL3 339 aaPredicted RBP28.11■■■□□ 2.09
CPNE1-220ENST00000458038 SP8Q8IXZ3 490 aa28.11■■■□□ 2.09
CPNE1-220ENST00000458038 RTFDC1Q9BY42 306 aaPredicted RBP28.11■■■□□ 2.09
CPNE1-220ENST00000458038 ABCC4O15439 1325 aa28.11■■■□□ 2.09
CPNE1-220ENST00000458038 VEGFBP49765 207 aa28.1■■■□□ 2.09
CPNE1-220ENST00000458038 SCNN1DP51172 638 aa28.1■■■□□ 2.09
CPNE1-220ENST00000458038 NECTIN2Q92692 538 aa28.1■■■□□ 2.09
CPNE1-220ENST00000458038 TRMT112Q9UI30 125 aaKnown RBP28.1■■■□□ 2.09
CPNE1-220ENST00000458038 RASSF10A6NK89 507 aa28.09■■■□□ 2.09
CPNE1-220ENST00000458038 DDX10Q13206 875 aaKnown RBP28.09■■■□□ 2.09
CPNE1-220ENST00000458038 DEFB115Q30KQ5 88 aa28.09■■■□□ 2.09
CPNE1-220ENST00000458038 DDX46Q7L014 1031 aaKnown RBP28.09■■■□□ 2.09
CPNE1-220ENST00000458038 AIDAQ96BJ3 306 aa28.09■■■□□ 2.09
CPNE1-220ENST00000458038 SH3TC1Q8TE82 1336 aa28.09■■■□□ 2.09
CPNE1-220ENST00000458038 EPS15P42566 896 aa28.08■■■□□ 2.09
CPNE1-220ENST00000458038 TMC4Q7Z404 712 aa28.08■■■□□ 2.09
CPNE1-220ENST00000458038 CCDC146Q8IYE0 955 aa28.08■■■□□ 2.09
CPNE1-220ENST00000458038 ZNRF3Q9ULT6 936 aa28.08■■■□□ 2.09
CPNE1-220ENST00000458038 LAMB2P55268 1798 aa28.07■■■□□ 2.08
CPNE1-220ENST00000458038 AOC3Q16853 763 aa28.07■■■□□ 2.08
CPNE1-220ENST00000458038 DPP8Q6V1X1 898 aaPredicted RBP28.07■■■□□ 2.08
CPNE1-220ENST00000458038 PRDM10Q9NQV6 1147 aa28.07■■■□□ 2.08
CPNE1-220ENST00000458038 TRIM35Q9UPQ4 493 aa28.07■■■□□ 2.08
CPNE1-220ENST00000458038 HCLS1P14317 486 aaPredicted RBP28.06■■■□□ 2.08
CPNE1-220ENST00000458038 MPNDQ8N594 471 aa28.06■■■□□ 2.08
CPNE1-220ENST00000458038 LAS1LQ9Y4W2 734 aaKnown RBP28.06■■■□□ 2.08
CPNE1-220ENST00000458038 LTBP1Q14766 1721 aa28.06■■■□□ 2.08
CPNE1-220ENST00000458038 CTCFP49711 727 aaPredicted RBP28.05■■■□□ 2.08
CPNE1-220ENST00000458038 HDGFL1Q5TGJ6 251 aa28.05■■■□□ 2.08
CPNE1-220ENST00000458038 PLBD2Q8NHP8 589 aa28.05■■■□□ 2.08
CPNE1-220ENST00000458038 DBF4Q9UBU7 674 aaPredicted RBP28.05■■■□□ 2.08
CPNE1-220ENST00000458038 FOXN1O15353 648 aa28.04■■■□□ 2.08
CPNE1-220ENST00000458038 GRAPQ13588 217 aa28.04■■■□□ 2.08
CPNE1-220ENST00000458038 ANKRD13DQ6ZTN6 518 aa28.04■■■□□ 2.08
CPNE1-220ENST00000458038 GRAPLQ8TC17 118 aaPredicted RBP28.04■■■□□ 2.08
CPNE1-220ENST00000458038 ADARB2Q9NS39 739 aaKnown RBP28.04■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms