RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 RASSF7Q02833 373 aa16.45■□□□□ 0.22
PRPF40A-203ENST00000448428 CRY2Q49AN0 593 aa16.45■□□□□ 0.22
PRPF40A-203ENST00000448428 SLC10A5Q5PT55 438 aa16.45■□□□□ 0.22
PRPF40A-203ENST00000448428 ZNF526Q8TF50 670 aaPredicted RBP16.45■□□□□ 0.22
PRPF40A-203ENST00000448428 CHMP4AQ9BY43 222 aa16.45■□□□□ 0.22
PRPF40A-203ENST00000448428 NFKBIEO00221 500 aa16.44■□□□□ 0.22
PRPF40A-203ENST00000448428 TWISTNBQ3B726 338 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-203ENST00000448428 SYNE4Q8N205 404 aa16.44■□□□□ 0.22
PRPF40A-203ENST00000448428 C7orf43Q8WVR3 580 aa16.44■□□□□ 0.22
PRPF40A-203ENST00000448428 SPINK5Q9NQ38 1064 aaPredicted RBP16.44■□□□□ 0.22
PRPF40A-203ENST00000448428 RNF181Q9P0P0 153 aa16.44■□□□□ 0.22
PRPF40A-203ENST00000448428 FANCIQ9NVI1 1328 aa16.44■□□□□ 0.22
PRPF40A-203ENST00000448428 ATP5J2-PTCD1G3V325 749 aa16.43■□□□□ 0.22
PRPF40A-203ENST00000448428 TCERG1O14776 1098 aaKnown RBP16.43■□□□□ 0.22
PRPF40A-203ENST00000448428 ALDH1B1P30837 517 aa16.43■□□□□ 0.22
PRPF40A-203ENST00000448428 C3orf67Q6ZVT6 689 aa16.43■□□□□ 0.22
PRPF40A-203ENST00000448428 ZNF428Q96B54 188 aa16.43■□□□□ 0.22
PRPF40A-203ENST00000448428 ISCA1Q9BUE6 129 aa16.43■□□□□ 0.22
PRPF40A-203ENST00000448428 GPBP1L1Q9HC44 474 aaPredicted RBP16.43■□□□□ 0.22
PRPF40A-203ENST00000448428 RIC1Q4ADV7 1423 aa16.43■□□□□ 0.22
PRPF40A-203ENST00000448428 LMNB1P20700 586 aa16.42■□□□□ 0.22
PRPF40A-203ENST00000448428 HOXA10P31260 410 aaPredicted RBP16.42■□□□□ 0.22
PRPF40A-203ENST00000448428 RIC3Q7Z5B4 369 aa16.42■□□□□ 0.22
PRPF40A-203ENST00000448428 TRMT112Q9UI30 125 aaKnown RBP16.42■□□□□ 0.22
PRPF40A-203ENST00000448428 CCER2I3L3R5 266 aa16.41■□□□□ 0.22
PRPF40A-203ENST00000448428 EXOSC9Q06265 439 aaKnown RBP16.41■□□□□ 0.22
PRPF40A-203ENST00000448428 GOLGA2Q08379 1002 aa16.41■□□□□ 0.22
PRPF40A-203ENST00000448428 RPGRQ92834 1020 aaKnown RBP16.41■□□□□ 0.22
PRPF40A-203ENST00000448428 NLRP3Q96P20 1036 aa16.41■□□□□ 0.22
PRPF40A-203ENST00000448428 RNF123Q5XPI4 1314 aa16.41■□□□□ 0.22
PRPF40A-203ENST00000448428 LAMB2P55268 1798 aa16.41■□□□□ 0.22
PRPF40A-203ENST00000448428 VAMP4O75379 141 aa16.4■□□□□ 0.22
PRPF40A-203ENST00000448428 HCLS1P14317 486 aaPredicted RBP16.4■□□□□ 0.22
PRPF40A-203ENST00000448428 TRIM28Q13263 835 aaKnown RBP16.4■□□□□ 0.22
PRPF40A-203ENST00000448428 SOGA3Q5TF21 947 aa16.4■□□□□ 0.22
PRPF40A-203ENST00000448428 OLFM4Q6UX06 510 aa16.4■□□□□ 0.22
PRPF40A-203ENST00000448428 STK31Q9BXU1 1019 aa16.4■□□□□ 0.22
PRPF40A-203ENST00000448428 DICER1Q9UPY3 1922 aaKnown RBP16.4■□□□□ 0.22
PRPF40A-203ENST00000448428 CACNA1FO60840 1977 aa16.4■□□□□ 0.22
PRPF40A-203ENST00000448428 SH3TC1Q8TE82 1336 aa16.4■□□□□ 0.22
PRPF40A-203ENST00000448428 ZNF521Q96K83 1311 aa16.4■□□□□ 0.22
PRPF40A-203ENST00000448428 SLC4A2P04920 1241 aa16.39■□□□□ 0.21
PRPF40A-203ENST00000448428 G2E3Q7L622 706 aa16.39■□□□□ 0.21
PRPF40A-203ENST00000448428 RBM17Q96I25 401 aaKnown RBP16.39■□□□□ 0.21
PRPF40A-203ENST00000448428 CRAMP1Q96RY5 1269 aa16.39■□□□□ 0.21
PRPF40A-203ENST00000448428 DDX58O95786 925 aaKnown RBP16.38■□□□□ 0.21
PRPF40A-203ENST00000448428 FAM89AQ96GI7 184 aa16.38■□□□□ 0.21
PRPF40A-203ENST00000448428 MYD88Q99836 296 aa16.38■□□□□ 0.21
PRPF40A-203ENST00000448428 TAOK3Q9H2K8 898 aa16.38■□□□□ 0.21
PRPF40A-203ENST00000448428 MYH16Q9H6N6 1097 aa16.38■□□□□ 0.21
PRPF40A-203ENST00000448428 LTBP3Q9NS15 1303 aa16.38■□□□□ 0.21
PRPF40A-203ENST00000448428 DDX60Q8IY21 1712 aaKnown RBP16.37■□□□□ 0.21
PRPF40A-203ENST00000448428 C1QTNF8P60827 252 aa16.37■□□□□ 0.21
PRPF40A-203ENST00000448428 CCDC93Q567U6 631 aa16.37■□□□□ 0.21
PRPF40A-203ENST00000448428 KSR2Q6VAB6 950 aa16.37■□□□□ 0.21
PRPF40A-203ENST00000448428 METTL22Q9BUU2 404 aaPredicted RBP16.37■□□□□ 0.21
PRPF40A-203ENST00000448428 MAP3K2Q9Y2U5 619 aa16.37■□□□□ 0.21
PRPF40A-203ENST00000448428 TAF1P21675 1872 aa16.37■□□□□ 0.21
PRPF40A-203ENST00000448428 PI4KAP2A4QPH2 592 aa16.36■□□□□ 0.21
PRPF40A-203ENST00000448428 RTL5Q5HYW3 569 aaPredicted RBP16.36■□□□□ 0.21
PRPF40A-203ENST00000448428 RTKN2Q8IZC4 609 aa16.36■□□□□ 0.21
PRPF40A-203ENST00000448428 PI4KAP1Q8N8J0 262 aa16.36■□□□□ 0.21
PRPF40A-203ENST00000448428 KIF3CO14782 793 aa16.35■□□□□ 0.21
PRPF40A-203ENST00000448428 DIEXFQ68CQ4 756 aaKnown RBP16.35■□□□□ 0.21
PRPF40A-203ENST00000448428 CCDC191Q8NCU4 936 aa16.35■□□□□ 0.21
PRPF40A-203ENST00000448428 NMRK2Q9NPI5 230 aa16.35■□□□□ 0.21
PRPF40A-203ENST00000448428 TIAM2Q8IVF5 1701 aa16.35■□□□□ 0.21
PRPF40A-203ENST00000448428 ZC3H4Q9UPT8 1303 aaKnown RBP16.35■□□□□ 0.21
PRPF40A-203ENST00000448428 FKBP4Q02790 459 aaKnown RBP eCLIP16.34■□□□□ 0.21
PRPF40A-203ENST00000448428 SLC51AQ86UW1 340 aa16.34■□□□□ 0.21
PRPF40A-203ENST00000448428 ZBTB38Q8NAP3 1195 aaPredicted RBP16.34■□□□□ 0.21
PRPF40A-203ENST00000448428 KDM2BQ8NHM5 1336 aa16.34■□□□□ 0.21
PRPF40A-203ENST00000448428 IRS4O14654 1257 aaPredicted RBP16.33■□□□□ 0.2
PRPF40A-203ENST00000448428 PPEF1O14829 653 aaPredicted RBP16.33■□□□□ 0.2
PRPF40A-203ENST00000448428 IGKV5-2P06315 115 aa16.33■□□□□ 0.2
PRPF40A-203ENST00000448428 FLIIQ13045 1269 aa16.33■□□□□ 0.2
PRPF40A-203ENST00000448428 CC2D2BQ6DHV5 1058 aa16.33■□□□□ 0.2
PRPF40A-203ENST00000448428 MIER1Q8N108 512 aa16.33■□□□□ 0.2
PRPF40A-203ENST00000448428 JARID2Q92833 1246 aaPredicted RBP16.33■□□□□ 0.2
PRPF40A-203ENST00000448428 ZNF277Q9NRM2 450 aaPredicted RBP16.33■□□□□ 0.2
PRPF40A-203ENST00000448428 CWC25Q9NXE8 425 aaPredicted RBP16.33■□□□□ 0.2
PRPF40A-203ENST00000448428 ABCC4O15439 1325 aa16.33■□□□□ 0.2
PRPF40A-203ENST00000448428 GLTPD2A6NH11 291 aa16.32■□□□□ 0.2
PRPF40A-203ENST00000448428 BBOX1O75936 387 aa16.32■□□□□ 0.2
PRPF40A-203ENST00000448428 SF3B3Q15393 1217 aaKnown RBP16.32■□□□□ 0.2
PRPF40A-203ENST00000448428 DDX46Q7L014 1031 aaKnown RBP16.32■□□□□ 0.2
PRPF40A-203ENST00000448428 SNED1Q8TER0 1413 aa16.32■□□□□ 0.2
PRPF40A-203ENST00000448428 RRAGCQ9HB90 399 aa16.32■□□□□ 0.2
PRPF40A-203ENST00000448428 ATP6V0A2Q9Y487 856 aa16.32■□□□□ 0.2
PRPF40A-203ENST00000448428 PCCAP05165 728 aaPredicted RBP16.31■□□□□ 0.2
PRPF40A-203ENST00000448428 GRIPAP1Q4V328 841 aa16.31■□□□□ 0.2
PRPF40A-203ENST00000448428 PSMD1Q99460 953 aa16.31■□□□□ 0.2
PRPF40A-203ENST00000448428 E9PSI1 815 aa16.3■□□□□ 0.2
PRPF40A-203ENST00000448428 SLFN5Q08AF3 891 aa16.3■□□□□ 0.2
PRPF40A-203ENST00000448428 NEXNQ0ZGT2 675 aa16.3■□□□□ 0.2
PRPF40A-203ENST00000448428 FKBP5Q13451 457 aaPredicted RBP16.3■□□□□ 0.2
PRPF40A-203ENST00000448428 GRAPQ13588 217 aa16.3■□□□□ 0.2
PRPF40A-203ENST00000448428 CWF19L2Q2TBE0 894 aaKnown RBP16.3■□□□□ 0.2
PRPF40A-203ENST00000448428 DPY19L2Q6NUT2 758 aa16.3■□□□□ 0.2
PRPF40A-203ENST00000448428 SP8Q8IXZ3 490 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 172.9 ms