RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 ERFEQ4G0M1 354 aa29.44■■■□□ 2.3
SMARCB1-205ENST00000417137 MRPL50Q8N5N7 158 aaKnown RBP29.44■■■□□ 2.3
SMARCB1-205ENST00000417137 SSH1Q8WYL5 1049 aa29.44■■■□□ 2.3
SMARCB1-205ENST00000417137 CCDC191Q8NCU4 936 aa29.43■■■□□ 2.3
SMARCB1-205ENST00000417137 ADCY9O60503 1353 aa29.42■■■□□ 2.3
SMARCB1-205ENST00000417137 KCNA3P22001 575 aa29.42■■■□□ 2.3
SMARCB1-205ENST00000417137 DNAAF4Q8WXU2 420 aa29.42■■■□□ 2.3
SMARCB1-205ENST00000417137 SMC4Q9NTJ3 1288 aa29.42■■■□□ 2.3
SMARCB1-205ENST00000417137 CACNA1FO60840 1977 aa29.41■■■□□ 2.3
SMARCB1-205ENST00000417137 SH3TC1Q8TE82 1336 aa29.41■■■□□ 2.3
SMARCB1-205ENST00000417137 SLC10A5Q5PT55 438 aa29.4■■■□□ 2.3
SMARCB1-205ENST00000417137 CWC25Q9NXE8 425 aaPredicted RBP29.4■■■□□ 2.3
SMARCB1-205ENST00000417137 KLRG2A4D1S0 409 aaPredicted RBP29.39■■■□□ 2.3
SMARCB1-205ENST00000417137 GRIN3BO60391 1043 aa29.39■■■□□ 2.3
SMARCB1-205ENST00000417137 DALRD3Q5D0E6 543 aaKnown RBP29.39■■■□□ 2.3
SMARCB1-205ENST00000417137 ZNF622Q969S3 477 aaKnown RBP eCLIP29.39■■■□□ 2.3
SMARCB1-205ENST00000417137 PTPRCP08575 1304 aa29.39■■■□□ 2.3
SMARCB1-205ENST00000417137 MASTLQ96GX5 879 aa29.38■■■□□ 2.29
SMARCB1-205ENST00000417137 NLRP3Q96P20 1036 aa29.38■■■□□ 2.29
SMARCB1-205ENST00000417137 BCL2L13Q9BXK5 485 aa29.38■■■□□ 2.29
SMARCB1-205ENST00000417137 WWC3Q9ULE0 1092 aa29.38■■■□□ 2.29
SMARCB1-205ENST00000417137 BCS1LQ9Y276 419 aa29.38■■■□□ 2.29
SMARCB1-205ENST00000417137 UTRNP46939 3433 aa29.37■■■□□ 2.29
SMARCB1-205ENST00000417137 SRGNP10124 158 aa29.37■■■□□ 2.29
SMARCB1-205ENST00000417137 HSP90B1P14625 803 aaKnown RBP29.37■■■□□ 2.29
SMARCB1-205ENST00000417137 RARSP54136 660 aaKnown RBP29.37■■■□□ 2.29
SMARCB1-205ENST00000417137 STYK1Q6J9G0 422 aa29.37■■■□□ 2.29
SMARCB1-205ENST00000417137 ZBTB38Q8NAP3 1195 aaPredicted RBP29.37■■■□□ 2.29
SMARCB1-205ENST00000417137 TTLL6Q8N841 843 aa29.36■■■□□ 2.29
SMARCB1-205ENST00000417137 LINS1Q8NG48 757 aa29.36■■■□□ 2.29
SMARCB1-205ENST00000417137 FAM89AQ96GI7 184 aa29.36■■■□□ 2.29
SMARCB1-205ENST00000417137 ARFGEF2Q9Y6D5 1785 aa29.36■■■□□ 2.29
SMARCB1-205ENST00000417137 ANKRD36CQ5JPF3 1778 aa29.35■■■□□ 2.29
SMARCB1-205ENST00000417137 IGKV5-2P06315 115 aa29.35■■■□□ 2.29
SMARCB1-205ENST00000417137 NPR1P16066 1061 aa29.35■■■□□ 2.29
SMARCB1-205ENST00000417137 YBX3P16989 372 aaKnown RBP eCLIP29.35■■■□□ 2.293e-8■■■□□ 18.7
SMARCB1-205ENST00000417137 BRPF1P55201 1214 aaPredicted RBP29.35■■■□□ 2.29
SMARCB1-205ENST00000417137 CNKSR1Q969H4 720 aa29.35■■■□□ 2.29
SMARCB1-205ENST00000417137 ABCC12Q96J65 1359 aa29.35■■■□□ 2.29
SMARCB1-205ENST00000417137 RIC1Q4ADV7 1423 aa29.35■■■□□ 2.29
SMARCB1-205ENST00000417137 NEURL1BA8MQ27 555 aa29.34■■■□□ 2.29
SMARCB1-205ENST00000417137 F6X3S4 739 aa29.34■■■□□ 2.29
SMARCB1-205ENST00000417137 CHD4Q14839 1912 aa29.33■■■□□ 2.29
SMARCB1-205ENST00000417137 PCCAP05165 728 aaPredicted RBP29.33■■■□□ 2.29
SMARCB1-205ENST00000417137 N4BP2Q86UW6 1770 aaPredicted RBP29.33■■■□□ 2.29
SMARCB1-205ENST00000417137 HCLS1P14317 486 aaPredicted RBP29.32■■■□□ 2.28
SMARCB1-205ENST00000417137 CWF19L2Q2TBE0 894 aaKnown RBP29.32■■■□□ 2.28
SMARCB1-205ENST00000417137 CRY2Q49AN0 593 aa29.32■■■□□ 2.28
SMARCB1-205ENST00000417137 RPGRQ92834 1020 aaKnown RBP29.32■■■□□ 2.28
SMARCB1-205ENST00000417137 KIAA1551Q9HCM1 1747 aa29.31■■■□□ 2.28
SMARCB1-205ENST00000417137 ALDH1B1P30837 517 aa29.31■■■□□ 2.28
SMARCB1-205ENST00000417137 SLC4A10Q6U841 1118 aa29.31■■■□□ 2.28
SMARCB1-205ENST00000417137 SYNE4Q8N205 404 aa29.31■■■□□ 2.28
SMARCB1-205ENST00000417137 IRS4O14654 1257 aaPredicted RBP29.3■■■□□ 2.28
SMARCB1-205ENST00000417137 RTL5Q5HYW3 569 aaPredicted RBP29.3■■■□□ 2.28
SMARCB1-205ENST00000417137 BEND3Q5T5X7 828 aa29.3■■■□□ 2.28
SMARCB1-205ENST00000417137 ANKRD31Q8N7Z5 1873 aa29.29■■■□□ 2.28
SMARCB1-205ENST00000417137 GCKRQ14397 625 aa29.29■■■□□ 2.28
SMARCB1-205ENST00000417137 RBM17Q96I25 401 aaKnown RBP29.29■■■□□ 2.28
SMARCB1-205ENST00000417137 NOB1Q9ULX3 412 aaKnown RBP29.29■■■□□ 2.28
SMARCB1-205ENST00000417137 KIF16BQ96L93 1317 aa29.28■■■□□ 2.28
SMARCB1-205ENST00000417137 SRCIN1Q9C0H9 1055 aa29.28■■■□□ 2.28
SMARCB1-205ENST00000417137 IPO8O15397 1037 aaKnown RBP29.27■■■□□ 2.28
SMARCB1-205ENST00000417137 ALDH1L1O75891 902 aa29.27■■■□□ 2.28
SMARCB1-205ENST00000417137 HOXA10P31260 410 aaPredicted RBP29.27■■■□□ 2.28
SMARCB1-205ENST00000417137 API5Q9BZZ5 524 aaKnown RBP29.27■■■□□ 2.28
SMARCB1-205ENST00000417137 ARHGAP45Q92619 1136 aa29.26■■■□□ 2.27
SMARCB1-205ENST00000417137 CDHR2Q9BYE9 1310 aa29.25■■■□□ 2.27
SMARCB1-205ENST00000417137 H7C1W4 665 aa29.25■■■□□ 2.27
SMARCB1-205ENST00000417137 C3orf67Q6ZVT6 689 aa29.25■■■□□ 2.27
SMARCB1-205ENST00000417137 YTHDC1Q96MU7 727 aaKnown RBP29.25■■■□□ 2.27
SMARCB1-205ENST00000417137 CRAMP1Q96RY5 1269 aa29.25■■■□□ 2.27
SMARCB1-205ENST00000417137 PDE8AO60658 829 aa29.24■■■□□ 2.27
SMARCB1-205ENST00000417137 C1QTNF8P60827 252 aa29.24■■■□□ 2.27
SMARCB1-205ENST00000417137 SF3B3Q15393 1217 aaKnown RBP29.24■■■□□ 2.27
SMARCB1-205ENST00000417137 PRPF40BQ6NWY9 871 aaKnown RBP29.24■■■□□ 2.27
SMARCB1-205ENST00000417137 JARID2Q92833 1246 aaPredicted RBP29.24■■■□□ 2.27
SMARCB1-205ENST00000417137 BCAR3O75815 825 aa29.23■■■□□ 2.27
SMARCB1-205ENST00000417137 ARHGAP27Q6ZUM4 889 aa29.23■■■□□ 2.27
SMARCB1-205ENST00000417137 DDX46Q7L014 1031 aaKnown RBP29.23■■■□□ 2.27
SMARCB1-205ENST00000417137 SOGA3Q5TF21 947 aa29.22■■■□□ 2.27
SMARCB1-205ENST00000417137 UBE3BQ7Z3V4 1068 aa29.22■■■□□ 2.27
SMARCB1-205ENST00000417137 C9orf78Q9NZ63 289 aaPredicted RBP29.21■■■□□ 2.27
SMARCB1-205ENST00000417137 DLEC1Q9Y238 1755 aa29.21■■■□□ 2.27
SMARCB1-205ENST00000417137 C21orf2O43822 256 aa29.2■■■□□ 2.26
SMARCB1-205ENST00000417137 FRAT1Q92837 279 aaPredicted RBP29.2■■■□□ 2.26
SMARCB1-205ENST00000417137 BRCA1P38398 1863 aaKnown RBP29.19■■■□□ 2.26
SMARCB1-205ENST00000417137 CCT4P50991 539 aaKnown RBP29.19■■■□□ 2.26
SMARCB1-205ENST00000417137 CCDC152Q4G0S7 254 aa29.19■■■□□ 2.26
SMARCB1-205ENST00000417137 ZNF219Q9P2Y4 722 aaPredicted RBP29.19■■■□□ 2.26
SMARCB1-205ENST00000417137 TNRC6CQ9HCJ0 1690 aaKnown RBP29.18■■■□□ 2.26
SMARCB1-205ENST00000417137 COL11A2P13942 1736 aaPredicted RBP29.18■■■□□ 2.26
SMARCB1-205ENST00000417137 GRM8O00222 908 aa29.18■■■□□ 2.26
SMARCB1-205ENST00000417137 BBOX1O75936 387 aa29.18■■■□□ 2.26
SMARCB1-205ENST00000417137 TMX4Q9H1E5 349 aaPredicted RBP29.18■■■□□ 2.26
SMARCB1-205ENST00000417137 PLA2G12BQ9BX93 195 aa29.16■■■□□ 2.26
SMARCB1-205ENST00000417137 CASP7P55210 303 aa29.15■■■□□ 2.26
SMARCB1-205ENST00000417137 CTSWP56202 376 aa29.15■■■□□ 2.26
SMARCB1-205ENST00000417137 GRAPQ13588 217 aa29.15■■■□□ 2.26
SMARCB1-205ENST00000417137 ZKSCAN2Q63HK3 967 aa29.15■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms