RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 DDX46Q7L014 1031 aaKnown RBP14.03□□□□□ -0.16
HMGB1-206ENST00000405805 SYTL4Q96C24 671 aaPredicted RBP14.03□□□□□ -0.16
HMGB1-206ENST00000405805 CLIP2Q9UDT6 1046 aa14.03□□□□□ -0.16
HMGB1-206ENST00000405805 PTH1RQ03431 593 aa14.03□□□□□ -0.16
HMGB1-206ENST00000405805 SOS1Q07889 1333 aaPredicted RBP14.03□□□□□ -0.16
HMGB1-206ENST00000405805 A0A087WWV3 80 aa14.03□□□□□ -0.16
HMGB1-206ENST00000405805 ANAPC15P60006 121 aa14.03□□□□□ -0.16
HMGB1-206ENST00000405805 ADCK5Q3MIX3 580 aa14.03□□□□□ -0.16
HMGB1-206ENST00000405805 ZSCAN31Q96LW9 406 aaPredicted RBP14.03□□□□□ -0.16
HMGB1-206ENST00000405805 MYD88Q99836 296 aa14.03□□□□□ -0.16
HMGB1-206ENST00000405805 FLT4P35916 1363 aa14.03□□□□□ -0.16
HMGB1-206ENST00000405805 H0YHG0 523 aa14.02□□□□□ -0.16
HMGB1-206ENST00000405805 MCM5P33992 734 aa14.02□□□□□ -0.16
HMGB1-206ENST00000405805 NMIQ13287 307 aaPredicted RBP14.02□□□□□ -0.16
HMGB1-206ENST00000405805 TULP1O00294 542 aaPredicted RBP14.02□□□□□ -0.17
HMGB1-206ENST00000405805 U2AF2P26368 475 aaKnown RBP eCLIP14.02□□□□□ -0.171e-7■■■■■ 37.5
HMGB1-206ENST00000405805 GTF2E1P29083 439 aaPredicted RBP14.02□□□□□ -0.17
HMGB1-206ENST00000405805 BRF1Q92994 677 aa14.02□□□□□ -0.17
HMGB1-206ENST00000405805 ORAI2Q96SN7 254 aa14.02□□□□□ -0.17
HMGB1-206ENST00000405805 TTC21AQ8NDW8 1320 aa14.02□□□□□ -0.17
HMGB1-206ENST00000405805 SNRKQ9NRH2 765 aa14.02□□□□□ -0.17
HMGB1-206ENST00000405805 SGSM2O43147 1006 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 PDILTQ8N807 584 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 INTS4Q96HW7 963 aaKnown RBP14.01□□□□□ -0.17
HMGB1-206ENST00000405805 LARGE1O95461 756 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 LRMPQ12912 555 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 HS1BP3Q53T59 392 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 HSP90AA4PQ58FG1 418 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 SYNE3Q6ZMZ3 975 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 HAND2P61296 217 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 TPM4P67936 248 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 STK38Q15208 465 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 NCBP3Q53F19 620 aaKnown RBP14.01□□□□□ -0.17
HMGB1-206ENST00000405805 C10orf67Q8IYJ2 551 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 RUFY3Q7L099 469 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 IL17REQ8NFR9 667 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 NOC3LQ8WTT2 800 aaKnown RBP14.01□□□□□ -0.17
HMGB1-206ENST00000405805 CHMP4CQ96CF2 233 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 TSPYL1Q9H0U9 437 aa14.01□□□□□ -0.17
HMGB1-206ENST00000405805 PIK3C2BO00750 1634 aa14□□□□□ -0.17
HMGB1-206ENST00000405805 POLR3DP05423 398 aaPredicted RBP14□□□□□ -0.17
HMGB1-206ENST00000405805 DDIT3P35638 169 aa14□□□□□ -0.17
HMGB1-206ENST00000405805 TYRO3Q06418 890 aa14□□□□□ -0.17
HMGB1-206ENST00000405805 CCDC129Q6ZRS4 1044 aa14□□□□□ -0.17
HMGB1-206ENST00000405805 ERC1Q8IUD2 1116 aa14□□□□□ -0.17
HMGB1-206ENST00000405805 CHRNA2Q15822 529 aa14□□□□□ -0.17
HMGB1-206ENST00000405805 MNS1Q8NEH6 495 aa14□□□□□ -0.17
HMGB1-206ENST00000405805 LARP1Q6PKG0 1096 aaKnown RBP14□□□□□ -0.17
HMGB1-206ENST00000405805 CDC37L1Q7L3B6 337 aa14□□□□□ -0.17
HMGB1-206ENST00000405805 CABLES1Q8TDN4 633 aa14□□□□□ -0.17
HMGB1-206ENST00000405805 IL25Q9H293 177 aa14□□□□□ -0.17
HMGB1-206ENST00000405805 LIG1P18858 919 aa13.99□□□□□ -0.17
HMGB1-206ENST00000405805 DMTNQ08495 405 aa13.99□□□□□ -0.17
HMGB1-206ENST00000405805 UBE3BQ7Z3V4 1068 aa13.99□□□□□ -0.17
HMGB1-206ENST00000405805 FAM193AP78312 1265 aa13.99□□□□□ -0.17
HMGB1-206ENST00000405805 CREB3L3Q68CJ9 461 aa13.99□□□□□ -0.17
HMGB1-206ENST00000405805 SH2B1Q9NRF2 756 aaPredicted RBP13.99□□□□□ -0.17
HMGB1-206ENST00000405805 ARHGEF40Q8TER5 1519 aa13.99□□□□□ -0.17
HMGB1-206ENST00000405805 PES1O00541 588 aaKnown RBP13.99□□□□□ -0.17
HMGB1-206ENST00000405805 RIOK3O14730 519 aaKnown RBP13.99□□□□□ -0.17
HMGB1-206ENST00000405805 HSPA4P34932 840 aa13.99□□□□□ -0.17
HMGB1-206ENST00000405805 LEKR1Q6ZMV7 388 aa13.99□□□□□ -0.17
HMGB1-206ENST00000405805 DBF4Q9UBU7 674 aaPredicted RBP13.99□□□□□ -0.17
HMGB1-206ENST00000405805 FAM135BQ49AJ0 1406 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 ZNF500O60304 480 aaPredicted RBP13.98□□□□□ -0.17
HMGB1-206ENST00000405805 SCAND2PQ9GZW5 306 aaPredicted RBP13.98□□□□□ -0.17
HMGB1-206ENST00000405805 PNPLA6Q8IY17 1366 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 AK9Q5TCS8 1911 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 JAK2O60674 1132 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 ME3Q16798 604 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 CCDC82Q8N4S0 544 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 EVI5LQ96CN4 794 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 ARGLU1Q9NWB6 273 aaPredicted RBP13.98□□□□□ -0.17
HMGB1-206ENST00000405805 KIAA1210Q9ULL0 1709 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 MYOM1P52179 1685 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 PIK3R4Q99570 1358 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 NBPF6Q5VWK0 638 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 NFXL1Q6ZNB6 911 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 DDX17Q92841 729 aaKnown RBP13.98□□□□□ -0.17
HMGB1-206ENST00000405805 NBPF4Q96M43 638 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 PYCARDQ9ULZ3 195 aa13.98□□□□□ -0.17
HMGB1-206ENST00000405805 BRPF1P55201 1214 aaPredicted RBP13.97□□□□□ -0.17
HMGB1-206ENST00000405805 RALYLQ86SE5 291 aaKnown RBP13.97□□□□□ -0.17
HMGB1-206ENST00000405805 KCNH5Q8NCM2 988 aa13.97□□□□□ -0.17
HMGB1-206ENST00000405805 FAM200AQ8TCP9 573 aa13.97□□□□□ -0.17
HMGB1-206ENST00000405805 GOLIM4O00461 696 aa13.97□□□□□ -0.17
HMGB1-206ENST00000405805 ANKRD1Q15327 319 aa13.97□□□□□ -0.17
HMGB1-206ENST00000405805 ATP7BP35670 1465 aa13.97□□□□□ -0.17
HMGB1-206ENST00000405805 RDXP35241 583 aaKnown RBP13.97□□□□□ -0.17
HMGB1-206ENST00000405805 UVSSAQ2YD98 709 aa13.97□□□□□ -0.17
HMGB1-206ENST00000405805 KRT28Q7Z3Y7 464 aa13.97□□□□□ -0.17
HMGB1-206ENST00000405805 ANKRD24Q8TF21 1146 aa13.97□□□□□ -0.17
HMGB1-206ENST00000405805 TPM3P06753 285 aa13.97□□□□□ -0.17
HMGB1-206ENST00000405805 NRBP1Q9UHY1 535 aa13.97□□□□□ -0.17
HMGB1-206ENST00000405805 HIP1O00291 1037 aa13.96□□□□□ -0.17
HMGB1-206ENST00000405805 PIBF1Q8WXW3 757 aa13.96□□□□□ -0.17
HMGB1-206ENST00000405805 RAD50Q92878 1312 aa13.96□□□□□ -0.17
HMGB1-206ENST00000405805 PTPN14Q15678 1187 aa13.96□□□□□ -0.17
HMGB1-206ENST00000405805 FSIP1Q8NA03 581 aa13.96□□□□□ -0.17
HMGB1-206ENST00000405805 BANK1Q8NDB2 785 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms