RNA–Protein interactions for RNA: ENST00000399002.6

SPTLC3-201, Transcript of serine palmitoyltransferase long chain base subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC3, Length 6,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC3-201ENST00000399002 HS1BP3Q53T59 392 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 BOLA2Q9H3K6 86 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 PHF8Q9UPP1 1060 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 URB2Q14146 1524 aaKnown RBP9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 SMARCA5O60264 1052 aaPredicted RBP9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 DISP3Q9P2K9 1392 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 URI1O94763 535 aaPredicted RBP9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 IARSP41252 1262 aaKnown RBP9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 PPP1R42Q7Z4L9 355 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 KLHL34Q8N239 644 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 STMN4Q9H169 189 aaPredicted RBP9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 RTL9Q8NET4 1388 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 CCDC102BQ68D86 513 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 SPECC1LQ69YQ0 1117 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 USP37Q86T82 979 aa9.62□□□□□ -0.87
SPTLC3-201ENST00000399002 TTC41PQ6P2S7 1318 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 METAP2P50579 478 aaKnown RBP eCLIP9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 FMNL3Q8IVF7 1028 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 IFNL2Q8IZJ0 200 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 RAD50Q92878 1312 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 CEP135Q66GS9 1140 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 ATL3Q6DD88 541 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 ERMNQ8TAM6 284 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 KAT14Q9H8E8 782 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 ADCY5O95622 1261 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 PLVAPQ9BX97 442 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 BCL11BQ9C0K0 894 aaPredicted RBP9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 GPATCH8Q9UKJ3 1502 aaKnown RBP9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 CALM1P0DP23 149 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 CALM2P0DP24 149 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 CALM3P0DP25 149 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 MTIF2P46199 727 aaKnown RBP9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 ZSCAN23Q3MJ62 389 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 TMEM67Q5HYA8 995 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 MFSD6Q6ZSS7 791 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 RPGRQ92834 1020 aaKnown RBP9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 MAP3K2Q9Y2U5 619 aa9.61□□□□□ -0.87
SPTLC3-201ENST00000399002 SSR1P43307 286 aaKnown RBP9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 CCDC184Q52MB2 194 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 STK11IPQ8N1F8 1099 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 FERMT2Q96AC1 680 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 WDHD1O75717 1129 aaPredicted RBP9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 GNAQP50148 359 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 TMC6Q7Z403 805 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 PPM1EQ8WY54 764 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 NAP1L4Q99733 375 aaKnown RBP9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 CRNKL1Q9BZJ0 848 aaKnown RBP9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 NSRP1Q9H0G5 558 aaKnown RBP9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 RASAL2Q9UJF2 1139 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 PRAG1Q86YV5 1406 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 PARD3Q8TEW0 1356 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 BICRAQ9NZM4 1560 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 HSF2BPO75031 334 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 GNAT2P19087 354 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 LRRC45Q96CN5 670 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 MINDY4BA8MYZ0 360 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 IVLP07476 585 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 CTR9Q6PD62 1173 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 CEP112Q8N8E3 955 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 TBC1D5Q92609 795 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 MBIPQ9NS73 344 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 EXOC1Q9NV70 894 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 TRMT112Q9UI30 125 aaKnown RBP9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 HLA-DOAP06340 250 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 CYLC1P35663 651 aaPredicted RBP9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 CCDC96Q2M329 555 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 NME9Q86XW9 330 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 ABCF2Q9UG63 623 aa9.6□□□□□ -0.87
SPTLC3-201ENST00000399002 PLCH2O75038 1416 aa9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 SNRPA1P09661 255 aaKnown RBP9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 SREK1Q8WXA9 508 aaKnown RBP9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 PLCD4Q9BRC7 762 aa9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 ANKIB1Q9P2G1 1089 aa9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 ZNF518AQ6AHZ1 1483 aa9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 TUBBP07437 444 aa9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 CCDC40Q4G0X9 1142 aa9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 SMARCC1Q92922 1105 aaPredicted RBP9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 RANBP6O60518 1105 aaKnown RBP9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 USP16Q9Y5T5 823 aa9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 MAPKBP1O60336 1514 aa9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 RBM25P49756 843 aaKnown RBP9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 TRPM2O94759 1503 aa9.59□□□□□ -0.87
SPTLC3-201ENST00000399002 C6orf163Q5TEZ5 329 aa9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 CCDC175P0C221 793 aa9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 PRKCSHP14314 528 aaPredicted RBP9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 PPP1R2P41236 205 aa9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 CCDC152Q4G0S7 254 aa9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 ADGRF5Q8IZF2 1346 aa9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 LMBR1Q8WVP7 490 aa9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 RAPGEF3O95398 923 aa9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 TDRD12Q587J7 1177 aaKnown RBP9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 SELENOOQ9BVL4 669 aa9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 FBXO3Q9UK99 471 aa9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 TNRQ92752 1358 aa9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 NBPF7P0C2Y1 421 aaPredicted RBP9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 GOPCQ9HD26 462 aa9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 OPA1O60313 960 aa9.58□□□□□ -0.88
SPTLC3-201ENST00000399002 FERMT3Q86UX7 667 aa9.57□□□□□ -0.88
SPTLC3-201ENST00000399002 CCDC155Q8N6L0 562 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms