RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 FAM227BQ96M60 508 aa30.3■■■□□ 2.44
C9orf40-201ENST00000376854 NLRP2Q9NX02 1062 aa30.3■■■□□ 2.44
C9orf40-201ENST00000376854 SIPA1L3O60292 1781 aaPredicted RBP30.3■■■□□ 2.44
C9orf40-201ENST00000376854 TPRNQ4KMQ1 711 aa30.3■■■□□ 2.44
C9orf40-201ENST00000376854 FAM184AQ8NB25 1140 aa30.3■■■□□ 2.44
C9orf40-201ENST00000376854 FIBPO43427 364 aa30.29■■■□□ 2.44
C9orf40-201ENST00000376854 KCNJ4P48050 445 aa30.29■■■□□ 2.44
C9orf40-201ENST00000376854 NMIQ13287 307 aaPredicted RBP30.29■■■□□ 2.44
C9orf40-201ENST00000376854 CREB3L3Q68CJ9 461 aa30.29■■■□□ 2.44
C9orf40-201ENST00000376854 ALS2Q96Q42 1657 aa30.29■■■□□ 2.44
C9orf40-201ENST00000376854 TCHHQ07283 1943 aa30.29■■■□□ 2.44
C9orf40-201ENST00000376854 LETM1O95202 739 aaPredicted RBP30.28■■■□□ 2.44
C9orf40-201ENST00000376854 HSP90AA2PQ14568 343 aaPredicted RBP30.28■■■□□ 2.44
C9orf40-201ENST00000376854 RIC3Q7Z5B4 369 aa30.28■■■□□ 2.44
C9orf40-201ENST00000376854 DDX54Q8TDD1 881 aaKnown RBP30.28■■■□□ 2.44
C9orf40-201ENST00000376854 RRP9O43818 475 aaKnown RBP30.28■■■□□ 2.44
C9orf40-201ENST00000376854 MAP4K1Q92918 833 aa30.28■■■□□ 2.44
C9orf40-201ENST00000376854 SIL1Q9H173 461 aa30.28■■■□□ 2.44
C9orf40-201ENST00000376854 TLR7Q9NYK1 1049 aaKnown RBP30.28■■■□□ 2.44
C9orf40-201ENST00000376854 MTMR6Q9Y217 621 aa30.28■■■□□ 2.44
C9orf40-201ENST00000376854 IGKV5-2P06315 115 aa30.27■■■□□ 2.44
C9orf40-201ENST00000376854 CABLES1Q8TDN4 633 aa30.27■■■□□ 2.44
C9orf40-201ENST00000376854 DTNBO60941 627 aa30.27■■■□□ 2.44
C9orf40-201ENST00000376854 PTMAP06454 111 aaKnown RBP30.27■■■□□ 2.44
C9orf40-201ENST00000376854 ME3Q16798 604 aa30.27■■■□□ 2.44
C9orf40-201ENST00000376854 UVSSAQ2YD98 709 aa30.27■■■□□ 2.44
C9orf40-201ENST00000376854 ST3GAL1Q11201 340 aa30.26■■■□□ 2.43
C9orf40-201ENST00000376854 RAPGEF4Q8WZA2 1011 aa30.26■■■□□ 2.43
C9orf40-201ENST00000376854 LARP1Q6PKG0 1096 aaKnown RBP30.25■■■□□ 2.43
C9orf40-201ENST00000376854 MST1RQ04912 1400 aa30.25■■■□□ 2.43
C9orf40-201ENST00000376854 ADAMTS7Q9UKP4 1686 aa30.25■■■□□ 2.43
C9orf40-201ENST00000376854 TMEM94Q12767 1356 aa30.25■■■□□ 2.43
C9orf40-201ENST00000376854 KDM6AO15550 1401 aaPredicted RBP30.25■■■□□ 2.43
C9orf40-201ENST00000376854 ATF3P18847 181 aa30.25■■■□□ 2.43
C9orf40-201ENST00000376854 CSPP1Q1MSJ5 1256 aa30.25■■■□□ 2.43
C9orf40-201ENST00000376854 ZNF790Q6PG37 636 aa30.25■■■□□ 2.43
C9orf40-201ENST00000376854 BOLA2Q9H3K6 86 aa30.25■■■□□ 2.43
C9orf40-201ENST00000376854 TERF1P54274 439 aa30.24■■■□□ 2.43
C9orf40-201ENST00000376854 DNM1Q05193 864 aaKnown RBP30.24■■■□□ 2.43
C9orf40-201ENST00000376854 SLC27A2O14975 620 aa30.24■■■□□ 2.43
C9orf40-201ENST00000376854 NEXNQ0ZGT2 675 aa30.24■■■□□ 2.43
C9orf40-201ENST00000376854 FSD1Q9BTV5 496 aa30.24■■■□□ 2.43
C9orf40-201ENST00000376854 SNRKQ9NRH2 765 aa30.24■■■□□ 2.43
C9orf40-201ENST00000376854 LMTK3Q96Q04 1460 aa30.23■■■□□ 2.43
C9orf40-201ENST00000376854 MYL6BP14649 208 aa30.23■■■□□ 2.43
C9orf40-201ENST00000376854 PSMA5P28066 241 aa30.23■■■□□ 2.43
C9orf40-201ENST00000376854 NECAB1Q8N987 351 aa30.23■■■□□ 2.43
C9orf40-201ENST00000376854 TPCN1Q9ULQ1 816 aa30.23■■■□□ 2.43
C9orf40-201ENST00000376854 R3HCC1Q9Y3T6 440 aaKnown RBP30.23■■■□□ 2.43
C9orf40-201ENST00000376854 A0A0D9SFI3 127 aa30.23■■■□□ 2.43
C9orf40-201ENST00000376854 KLHDC4Q8TBB5 520 aa30.23■■■□□ 2.43
C9orf40-201ENST00000376854 UBE2Q2Q8WVN8 375 aa30.23■■■□□ 2.43
C9orf40-201ENST00000376854 NPHP3Q7Z494 1330 aa30.23■■■□□ 2.43
C9orf40-201ENST00000376854 VPS37CA5D8V6 355 aaPredicted RBP30.22■■■□□ 2.43
C9orf40-201ENST00000376854 NEURL1BA8MQ27 555 aa30.22■■■□□ 2.43
C9orf40-201ENST00000376854 MEGF6O75095 1541 aa30.22■■■□□ 2.43
C9orf40-201ENST00000376854 NFATC2IPQ8NCF5 419 aa30.22■■■□□ 2.43
C9orf40-201ENST00000376854 SLC52A2Q9HAB3 445 aa30.22■■■□□ 2.43
C9orf40-201ENST00000376854 PHKG2P15735 406 aa30.21■■■□□ 2.43
C9orf40-201ENST00000376854 CHRNA2Q15822 529 aa30.21■■■□□ 2.43
C9orf40-201ENST00000376854 XAGE3Q8WTP9 111 aa30.21■■■□□ 2.43
C9orf40-201ENST00000376854 HCLS1P14317 486 aaPredicted RBP30.2■■■□□ 2.43
C9orf40-201ENST00000376854 GCKRQ14397 625 aa30.2■■■□□ 2.43
C9orf40-201ENST00000376854 TATP17735 454 aaPredicted RBP30.19■■■□□ 2.42
C9orf40-201ENST00000376854 RNF20Q5VTR2 975 aa30.19■■■□□ 2.42
C9orf40-201ENST00000376854 MYD88Q99836 296 aa30.19■■■□□ 2.42
C9orf40-201ENST00000376854 USP25Q9UHP3 1055 aa30.19■■■□□ 2.42
C9orf40-201ENST00000376854 CSB-PGBD3P0DP91 1061 aa30.18■■■□□ 2.42
C9orf40-201ENST00000376854 COPS6Q7L5N1 327 aa30.18■■■□□ 2.42
C9orf40-201ENST00000376854 C5P01031 1676 aa30.18■■■□□ 2.42
C9orf40-201ENST00000376854 EPHA10Q5JZY3 1008 aa30.18■■■□□ 2.42
C9orf40-201ENST00000376854 METTL22Q9BUU2 404 aaPredicted RBP30.18■■■□□ 2.42
C9orf40-201ENST00000376854 STRCP1A6NGW2 1772 aa30.18■■■□□ 2.42
C9orf40-201ENST00000376854 COL9A3Q14050 684 aaPredicted RBP30.17■■■□□ 2.42
C9orf40-201ENST00000376854 BLOC1S2Q6QNY1 142 aa30.17■■■□□ 2.42
C9orf40-201ENST00000376854 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP30.17■■■□□ 2.42
C9orf40-201ENST00000376854 MED23Q9ULK4 1368 aa30.17■■■□□ 2.42
C9orf40-201ENST00000376854 LARP1BQ659C4 914 aaKnown RBP30.17■■■□□ 2.42
C9orf40-201ENST00000376854 ANKRD1Q15327 319 aa30.16■■■□□ 2.42
C9orf40-201ENST00000376854 SCN11AQ9UI33 1791 aa30.15■■■□□ 2.42
C9orf40-201ENST00000376854 PIP4K2AP48426 406 aaPredicted RBP30.15■■■□□ 2.42
C9orf40-201ENST00000376854 GIMAP6Q6P9H5 292 aa30.15■■■□□ 2.42
C9orf40-201ENST00000376854 ZNF496Q96IT1 587 aaPredicted RBP30.15■■■□□ 2.42
C9orf40-201ENST00000376854 COL18A1P39060 1754 aa30.15■■■□□ 2.42
C9orf40-201ENST00000376854 MRC1P22897 1456 aa30.14■■■□□ 2.42
C9orf40-201ENST00000376854 ADCY5O95622 1261 aa30.14■■■□□ 2.42
C9orf40-201ENST00000376854 PDIA4P13667 645 aaKnown RBP30.14■■■□□ 2.42
C9orf40-201ENST00000376854 RPS6KB1P23443 525 aa30.14■■■□□ 2.42
C9orf40-201ENST00000376854 ZNF589Q86UQ0 364 aaPredicted RBP30.14■■■□□ 2.42
C9orf40-201ENST00000376854 KLHL34Q8N239 644 aa30.14■■■□□ 2.42
C9orf40-201ENST00000376854 TCEANC2Q96MN5 208 aa30.14■■■□□ 2.42
C9orf40-201ENST00000376854 FUCA2Q9BTY2 467 aa30.13■■■□□ 2.41
C9orf40-201ENST00000376854 TAF6LQ9Y6J9 622 aa30.13■■■□□ 2.41
C9orf40-201ENST00000376854 KIAA2012Q0VF49 1180 aa30.13■■■□□ 2.41
C9orf40-201ENST00000376854 CYP27B1O15528 508 aa30.12■■■□□ 2.41
C9orf40-201ENST00000376854 ANKRD13DQ6ZTN6 518 aa30.12■■■□□ 2.41
C9orf40-201ENST00000376854 HMG20BQ9P0W2 317 aa30.12■■■□□ 2.41
C9orf40-201ENST00000376854 PDCP20941 246 aa30.12■■■□□ 2.41
C9orf40-201ENST00000376854 CDC37L1Q7L3B6 337 aa30.12■■■□□ 2.41
C9orf40-201ENST00000376854 IFNL2Q8IZJ0 200 aa30.12■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms