RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 USHBP1Q8N6Y0 703 aa13.24□□□□□ -0.29
VCL-202ENST00000372755 SREK1Q8WXA9 508 aaKnown RBP13.24□□□□□ -0.29
VCL-202ENST00000372755 EXOC1Q9NV70 894 aa13.24□□□□□ -0.29
VCL-202ENST00000372755 CWC25Q9NXE8 425 aaPredicted RBP13.24□□□□□ -0.29
VCL-202ENST00000372755 ORC3Q9UBD5 711 aaPredicted RBP13.24□□□□□ -0.29
VCL-202ENST00000372755 POLR3GO15318 223 aaPredicted RBP13.23□□□□□ -0.29
VCL-202ENST00000372755 TRAF1Q13077 416 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 EPRSP07814 1512 aaKnown RBP13.23□□□□□ -0.29
VCL-202ENST00000372755 BMP15O95972 392 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 UQCRFS1P1P0C7P4 283 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 PPP1R42Q7Z4L9 355 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 TBC1D5Q92609 795 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 C16orf45Q96MC5 204 aaPredicted RBP13.23□□□□□ -0.29
VCL-202ENST00000372755 NEK1Q96PY6 1258 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 SSX2IPQ9Y2D8 614 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 IFT140Q96RY7 1462 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 FLIIQ13045 1269 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 PPP4R3BQ5MIZ7 849 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 DDX46Q7L014 1031 aaKnown RBP13.23□□□□□ -0.29
VCL-202ENST00000372755 TMX1Q9H3N1 280 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 ZSCAN16Q9H4T2 348 aaPredicted RBP13.23□□□□□ -0.29
VCL-202ENST00000372755 PUF60Q9UHX1 559 aaKnown RBP13.23□□□□□ -0.29
VCL-202ENST00000372755 SAMM50Q9Y512 469 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 BIN1O00499 593 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 PHF8Q9UPP1 1060 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 TTC21BQ7Z4L5 1316 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 CKAP4Q07065 602 aaKnown RBP13.23□□□□□ -0.29
VCL-202ENST00000372755 KIAA0753Q2KHM9 967 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 JADE2Q9NQC1 790 aa13.23□□□□□ -0.29
VCL-202ENST00000372755 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.23□□□□□ -0.291e-7■□□□□ 11.2
VCL-202ENST00000372755 LRPPRCP42704 1394 aaKnown RBP13.23□□□□□ -0.29
VCL-202ENST00000372755 NBPF7P0C2Y1 421 aaPredicted RBP13.22□□□□□ -0.29
VCL-202ENST00000372755 LMAN1P49257 510 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 SPATA24Q86W54 205 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 CRNKL1Q9BZJ0 848 aaKnown RBP13.22□□□□□ -0.29
VCL-202ENST00000372755 EXOC5O00471 708 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 LDHAL6AQ6ZMR3 332 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 TICAM2Q86XR7 235 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 CCDC155Q8N6L0 562 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 BICD1Q96G01 975 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 MAP3K2Q9Y2U5 619 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 PPP1R14CQ8TAE6 165 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 TRIM47Q96LD4 638 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 SLC26A6Q9BXS9 759 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 UBE2HP62256 183 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 NME9Q86XW9 330 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 CTAGE1Q96RT6 745 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 VAT1LQ9HCJ6 419 aa13.22□□□□□ -0.29
VCL-202ENST00000372755 HSF2BPO75031 334 aa13.21□□□□□ -0.29
VCL-202ENST00000372755 ADCY5O95622 1261 aa13.21□□□□□ -0.29
VCL-202ENST00000372755 MYCNP04198 464 aaPredicted RBP13.21□□□□□ -0.29
VCL-202ENST00000372755 WAPLQ7Z5K2 1190 aa13.21□□□□□ -0.29
VCL-202ENST00000372755 PIK3R4Q99570 1358 aa13.21□□□□□ -0.29
VCL-202ENST00000372755 ZNF165P49910 485 aa13.21□□□□□ -0.29
VCL-202ENST00000372755 PAXBP1Q9Y5B6 917 aa13.21□□□□□ -0.29
VCL-202ENST00000372755 ZBTB3Q9H5J0 574 aa13.21□□□□□ -0.29
VCL-202ENST00000372755 SUPT6HQ7KZ85 1726 aaKnown RBP13.21□□□□□ -0.3
VCL-202ENST00000372755 MICU3Q86XE3 530 aa13.21□□□□□ -0.3
VCL-202ENST00000372755 KRT23Q9C075 422 aa13.21□□□□□ -0.3
VCL-202ENST00000372755 TTC12Q9H892 705 aaPredicted RBP13.21□□□□□ -0.3
VCL-202ENST00000372755 TFIP11Q9UBB9 837 aaKnown RBP13.21□□□□□ -0.3
VCL-202ENST00000372755 N4BP3O15049 544 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 MYO1BO43795 1136 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 BMS1Q14692 1282 aaKnown RBP13.2□□□□□ -0.3
VCL-202ENST00000372755 PAXIP1Q6ZW49 1069 aaPredicted RBP13.2□□□□□ -0.3
VCL-202ENST00000372755 CCDC144CPQ8IYA2 1237 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 GPTP24298 496 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 NSD2O96028 1365 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 AKR1B10O60218 316 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 BMP2KLQ5H9B9 411 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 IFNL2Q8IZJ0 200 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 NCAPD3P42695 1498 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 MRC2Q9UBG0 1479 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 PRPHP41219 470 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 TBC1D2Q9BYX2 928 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 CCDC171Q6TFL3 1326 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 CEP135Q66GS9 1140 aa13.2□□□□□ -0.3
VCL-202ENST00000372755 CYLC1P35663 651 aaPredicted RBP13.2□□□□□ -0.3
VCL-202ENST00000372755 GNG11P61952 73 aa13.19□□□□□ -0.3
VCL-202ENST00000372755 TMTC2Q8N394 836 aa13.19□□□□□ -0.3
VCL-202ENST00000372755 RASAL2Q9UJF2 1139 aa13.19□□□□□ -0.3
VCL-202ENST00000372755 EMILIN1Q9Y6C2 1016 aa13.19□□□□□ -0.3
VCL-202ENST00000372755 SPAG1Q07617 926 aa13.19□□□□□ -0.3
VCL-202ENST00000372755 UTP14AQ9BVJ6 771 aaKnown RBP13.19□□□□□ -0.3
VCL-202ENST00000372755 PANK2Q9BZ23 570 aa13.19□□□□□ -0.3
VCL-202ENST00000372755 SYNCQ9H7C4 482 aa13.19□□□□□ -0.3
VCL-202ENST00000372755 KRT13P13646 458 aa13.19□□□□□ -0.3
VCL-202ENST00000372755 WTAPQ15007 396 aa13.19□□□□□ -0.3
VCL-202ENST00000372755 CCDC184Q52MB2 194 aa13.19□□□□□ -0.3
VCL-202ENST00000372755 RRAGBQ5VZM2 374 aa13.19□□□□□ -0.3
VCL-202ENST00000372755 NSRP1Q9H0G5 558 aaKnown RBP13.19□□□□□ -0.3
VCL-202ENST00000372755 ZNF219Q9P2Y4 722 aaPredicted RBP13.19□□□□□ -0.3
VCL-202ENST00000372755 A0A1W2PRG0 241 aa13.18□□□□□ -0.3
VCL-202ENST00000372755 ZFYP08048 801 aaPredicted RBP13.18□□□□□ -0.3
VCL-202ENST00000372755 SYKP43405 635 aa13.18□□□□□ -0.3
VCL-202ENST00000372755 TBC1D9Q6ZT07 1266 aa13.18□□□□□ -0.3
VCL-202ENST00000372755 SPAG5Q96R06 1193 aa13.18□□□□□ -0.3
VCL-202ENST00000372755 CAMSAP2Q08AD1 1489 aa13.18□□□□□ -0.3
VCL-202ENST00000372755 WASLO00401 505 aaPredicted RBP13.18□□□□□ -0.3
VCL-202ENST00000372755 RBM25P49756 843 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms