RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 GIGYF2Q6Y7W6 1299 aaKnown RBP17■□□□□ 0.31
PTPRF-202ENST00000372405 NUTM1Q86Y26 1132 aa17■□□□□ 0.31
PTPRF-202ENST00000372405 ONECUT3O60422 494 aaPredicted RBP16.99■□□□□ 0.31
PTPRF-202ENST00000372405 EIF5P55010 431 aaKnown RBP16.99■□□□□ 0.31
PTPRF-202ENST00000372405 SMARCC1Q92922 1105 aaPredicted RBP16.99■□□□□ 0.31
PTPRF-202ENST00000372405 CDC45O75419 566 aa16.98■□□□□ 0.31
PTPRF-202ENST00000372405 SASH1O94885 1247 aa16.98■□□□□ 0.31
PTPRF-202ENST00000372405 ARXQ96QS3 562 aa16.98■□□□□ 0.31
PTPRF-202ENST00000372405 CCDC87Q9NVE4 849 aa16.98■□□□□ 0.31
PTPRF-202ENST00000372405 OS9Q13438 667 aaPredicted RBP16.98■□□□□ 0.31
PTPRF-202ENST00000372405 TRPC5Q9UL62 973 aaPredicted RBP16.98■□□□□ 0.31
PTPRF-202ENST00000372405 PTPN12Q05209 780 aaKnown RBP16.97■□□□□ 0.31
PTPRF-202ENST00000372405 LMBR1LQ6UX01 489 aa16.97■□□□□ 0.31
PTPRF-202ENST00000372405 UPF2Q9HAU5 1272 aaKnown RBP16.97■□□□□ 0.31
PTPRF-202ENST00000372405 COPRSQ9NQ92 184 aa16.97■□□□□ 0.31
PTPRF-202ENST00000372405 TBC1D2BQ9UPU7 963 aa16.97■□□□□ 0.31
PTPRF-202ENST00000372405 DZIP3Q86Y13 1208 aaKnown RBP16.97■□□□□ 0.31
PTPRF-202ENST00000372405 SIL1Q9H173 461 aa16.97■□□□□ 0.31
PTPRF-202ENST00000372405 AOX1Q06278 1338 aa16.97■□□□□ 0.31
PTPRF-202ENST00000372405 ERC1Q8IUD2 1116 aa16.96■□□□□ 0.31
PTPRF-202ENST00000372405 PI4K2BQ8TCG2 481 aa16.96■□□□□ 0.31
PTPRF-202ENST00000372405 ERVV-1B6SEH8 477 aa16.95■□□□□ 0.3
PTPRF-202ENST00000372405 KCNQ4P56696 695 aa16.95■□□□□ 0.3
PTPRF-202ENST00000372405 G3BP1Q13283 466 aaKnown RBP eCLIP16.95■□□□□ 0.3
PTPRF-202ENST00000372405 NLRP10Q86W26 655 aa16.95■□□□□ 0.3
PTPRF-202ENST00000372405 C22orf23Q9BZE7 217 aa16.95■□□□□ 0.3
PTPRF-202ENST00000372405 USP42Q9H9J4 1324 aaKnown RBP16.95■□□□□ 0.3
PTPRF-202ENST00000372405 GPTP24298 496 aa16.95■□□□□ 0.3
PTPRF-202ENST00000372405 SEPT12Q8IYM1 358 aa16.95■□□□□ 0.3
PTPRF-202ENST00000372405 LINC00116Q8NCU8 138 aa16.95■□□□□ 0.3
PTPRF-202ENST00000372405 AK9Q5TCS8 1911 aa16.94■□□□□ 0.3
PTPRF-202ENST00000372405 PCCAP05165 728 aaPredicted RBP16.94■□□□□ 0.3
PTPRF-202ENST00000372405 SYNE4Q8N205 404 aa16.94■□□□□ 0.3
PTPRF-202ENST00000372405 CLASRPQ8N2M8 674 aaKnown RBP16.94■□□□□ 0.3
PTPRF-202ENST00000372405 FAM89AQ96GI7 184 aa16.94■□□□□ 0.3
PTPRF-202ENST00000372405 DDRGK1Q96HY6 314 aa16.94■□□□□ 0.3
PTPRF-202ENST00000372405 QTRT2Q9H974 415 aaKnown RBP16.94■□□□□ 0.3
PTPRF-202ENST00000372405 EP400Q96L91 3159 aa16.94■□□□□ 0.3
PTPRF-202ENST00000372405 EAF2Q96CJ1 260 aaPredicted RBP16.93■□□□□ 0.3
PTPRF-202ENST00000372405 LY75O60449 1722 aa16.93■□□□□ 0.3
PTPRF-202ENST00000372405 UBN2Q6ZU65 1347 aa16.93■□□□□ 0.3
PTPRF-202ENST00000372405 HSP90AB3PQ58FF7 597 aa16.93■□□□□ 0.3
PTPRF-202ENST00000372405 ZBTB38Q8NAP3 1195 aaPredicted RBP16.93■□□□□ 0.3
PTPRF-202ENST00000372405 BRWD3Q6RI45 1802 aa16.93■□□□□ 0.3
PTPRF-202ENST00000372405 BCORQ6W2J9 1755 aa16.93■□□□□ 0.3
PTPRF-202ENST00000372405 ZNF34Q8IZ26 560 aa16.92■□□□□ 0.3
PTPRF-202ENST00000372405 MYH3P11055 1940 aa16.92■□□□□ 0.3
PTPRF-202ENST00000372405 CAMTA2O94983 1202 aa16.91■□□□□ 0.3
PTPRF-202ENST00000372405 AACSQ86V21 672 aa16.91■□□□□ 0.3
PTPRF-202ENST00000372405 PLA2G12BQ9BX93 195 aa16.91■□□□□ 0.3
PTPRF-202ENST00000372405 TAF1LQ8IZX4 1826 aa16.91■□□□□ 0.3
PTPRF-202ENST00000372405 RBM25P49756 843 aaKnown RBP16.91■□□□□ 0.3
PTPRF-202ENST00000372405 TLR7Q9NYK1 1049 aaKnown RBP16.91■□□□□ 0.3
PTPRF-202ENST00000372405 CHMP3Q9Y3E7 222 aa16.91■□□□□ 0.3
PTPRF-202ENST00000372405 TTC41PQ6P2S7 1318 aa16.9■□□□□ 0.3
PTPRF-202ENST00000372405 CDHR2Q9BYE9 1310 aa16.9■□□□□ 0.3
PTPRF-202ENST00000372405 SLC4A3P48751 1232 aa16.89■□□□□ 0.3
PTPRF-202ENST00000372405 ATG9AQ7Z3C6 839 aa16.89■□□□□ 0.3
PTPRF-202ENST00000372405 TRIM6-TRIM34B2RNG4 842 aa16.89■□□□□ 0.29
PTPRF-202ENST00000372405 MAP4K4O95819 1239 aaPredicted RBP16.89■□□□□ 0.29
PTPRF-202ENST00000372405 IFIT2P09913 472 aaKnown RBP16.89■□□□□ 0.29
PTPRF-202ENST00000372405 TFCP2Q12800 502 aa16.89■□□□□ 0.29
PTPRF-202ENST00000372405 RILPL2Q969X0 211 aa16.89■□□□□ 0.29
PTPRF-202ENST00000372405 ZNF594Q96JF6 807 aaPredicted RBP16.89■□□□□ 0.29
PTPRF-202ENST00000372405 CCDC8Q9H0W5 538 aaPredicted RBP16.89■□□□□ 0.29
PTPRF-202ENST00000372405 CNTNAP4Q9C0A0 1308 aa16.88■□□□□ 0.29
PTPRF-202ENST00000372405 CSF1RP07333 972 aa16.88■□□□□ 0.29
PTPRF-202ENST00000372405 ECHDC1Q9NTX5 307 aa16.88■□□□□ 0.29
PTPRF-202ENST00000372405 SMIM5Q71RC9 77 aa16.88■□□□□ 0.29
PTPRF-202ENST00000372405 CHMLP26374 656 aa16.87■□□□□ 0.29
PTPRF-202ENST00000372405 KIF2CQ99661 725 aa16.87■□□□□ 0.29
PTPRF-202ENST00000372405 TRMT112Q9UI30 125 aaKnown RBP16.87■□□□□ 0.29
PTPRF-202ENST00000372405 SCN7AQ01118 1682 aa16.87■□□□□ 0.29
PTPRF-202ENST00000372405 GLRX3O76003 335 aaKnown RBP16.86■□□□□ 0.29
PTPRF-202ENST00000372405 LRRC24Q50LG9 513 aa16.86■□□□□ 0.29
PTPRF-202ENST00000372405 TNNI3KQ59H18 835 aa16.86■□□□□ 0.29
PTPRF-202ENST00000372405 SUSD4Q5VX71 490 aa16.86■□□□□ 0.29
PTPRF-202ENST00000372405 CCDC85AQ96PX6 553 aaPredicted RBP16.86■□□□□ 0.29
PTPRF-202ENST00000372405 FPGT-TNNI3KV9GXZ4 949 aa16.86■□□□□ 0.29
PTPRF-202ENST00000372405 DDX60Q8IY21 1712 aaKnown RBP16.86■□□□□ 0.29
PTPRF-202ENST00000372405 CASC1Q6TDU7 716 aa16.86■□□□□ 0.29
PTPRF-202ENST00000372405 TTLL11Q8NHH1 800 aa16.86■□□□□ 0.29
PTPRF-202ENST00000372405 USP26Q9BXU7 913 aa16.86■□□□□ 0.29
PTPRF-202ENST00000372405 PUS3Q9BZE2 481 aaKnown RBP16.86■□□□□ 0.29
PTPRF-202ENST00000372405 DBNLQ9UJU6 430 aaKnown RBP16.86■□□□□ 0.29
PTPRF-202ENST00000372405 CCNL1Q9UK58 526 aaPredicted RBP16.86■□□□□ 0.29
PTPRF-202ENST00000372405 IRS4O14654 1257 aaPredicted RBP16.85■□□□□ 0.29
PTPRF-202ENST00000372405 EYA2O00167 538 aa16.84■□□□□ 0.29
PTPRF-202ENST00000372405 ERC2O15083 957 aa16.84■□□□□ 0.29
PTPRF-202ENST00000372405 CTSWP56202 376 aa16.84■□□□□ 0.29
PTPRF-202ENST00000372405 RC3H1Q5TC82 1133 aaKnown RBP16.84■□□□□ 0.29
PTPRF-202ENST00000372405 AMIGO3Q86WK7 504 aa16.84■□□□□ 0.29
PTPRF-202ENST00000372405 GPATCH3Q96I76 525 aa16.84■□□□□ 0.29
PTPRF-202ENST00000372405 ESYT1Q9BSJ8 1104 aa16.84■□□□□ 0.29
PTPRF-202ENST00000372405 IL25Q9H293 177 aa16.84■□□□□ 0.29
PTPRF-202ENST00000372405 CIAO1O76071 339 aa16.84■□□□□ 0.29
PTPRF-202ENST00000372405 CCDC57Q2TAC2 916 aa16.84■□□□□ 0.29
PTPRF-202ENST00000372405 BCL11BQ9C0K0 894 aaPredicted RBP16.84■□□□□ 0.29
PTPRF-202ENST00000372405 GREM2Q9H772 168 aa16.84■□□□□ 0.29
PTPRF-202ENST00000372405 C4BP0C0L5 1744 aa16.83■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms