RNA–Protein interactions for RNA: ENST00000370966.9

DEPDC1-201, Transcript of DEP domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DEPDC1, Length 4,586 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-201ENST00000370966 SSBP05455 408 aaKnown RBP eCLIP13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 STX1AQ16623 288 aa13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 EDC4Q6P2E9 1401 aaKnown RBP13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 CHRNA2Q15822 529 aa13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 ZFYVE27Q5T4F4 411 aa13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 CCDC181Q5TID7 509 aa13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 IQCEQ6IPM2 695 aa13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 ZSCAN29Q8IWY8 852 aaPredicted RBP13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 CNNM3Q8NE01 707 aa13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 ZCRB1Q8TBF4 217 aaKnown RBP13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 BRF1Q92994 677 aa13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 INTS4Q96HW7 963 aaKnown RBP13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 ATP7AQ04656 1500 aa13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 BLMP54132 1417 aaPredicted RBP13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 DDX46Q7L014 1031 aaKnown RBP13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 CATIPQ7Z7H3 387 aa13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 ZMYND15Q9H091 742 aa13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 SEC63Q9UGP8 760 aaKnown RBP13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 TOP1P11387 765 aaKnown RBP13.76□□□□□ -0.21
DEPDC1-201ENST00000370966 KDM2BQ8NHM5 1336 aa13.75□□□□□ -0.21
DEPDC1-201ENST00000370966 IL13P35225 146 aa13.75□□□□□ -0.21
DEPDC1-201ENST00000370966 RAB3GAP1Q15042 981 aa13.75□□□□□ -0.21
DEPDC1-201ENST00000370966 MCMDC2Q4G0Z9 681 aa13.75□□□□□ -0.21
DEPDC1-201ENST00000370966 LMBR1LQ6UX01 489 aa13.75□□□□□ -0.21
DEPDC1-201ENST00000370966 PTPRTO14522 1441 aa13.75□□□□□ -0.21
DEPDC1-201ENST00000370966 RBM5P52756 815 aaKnown RBP eCLIP13.75□□□□□ -0.21
DEPDC1-201ENST00000370966 KRT24Q2M2I5 525 aa13.75□□□□□ -0.21
DEPDC1-201ENST00000370966 TMEM67Q5HYA8 995 aa13.75□□□□□ -0.21
DEPDC1-201ENST00000370966 ZNF444Q8N0Y2 327 aaPredicted RBP13.75□□□□□ -0.21
DEPDC1-201ENST00000370966 ZMYM3Q14202 1370 aa13.75□□□□□ -0.21
DEPDC1-201ENST00000370966 PIBF1Q8WXW3 757 aa13.75□□□□□ -0.21
DEPDC1-201ENST00000370966 RAB34Q9BZG1 259 aa13.75□□□□□ -0.21
DEPDC1-201ENST00000370966 ADCY5O95622 1261 aa13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 SBNO2Q9Y2G9 1366 aa13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 HOXB7P09629 217 aa13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 CCDC82Q8N4S0 544 aa13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 ERLIN2O94905 339 aa13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 LDHCP07864 332 aa13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 LEKR1Q6ZMV7 388 aa13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 SLF2Q8IX21 1173 aa13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 IP6K1Q92551 441 aa13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 CHL1O00533 1208 aa13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 RBM25P49756 843 aaKnown RBP13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 METAP2P50579 478 aaKnown RBP eCLIP13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 SLC39A6Q13433 755 aa13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 AXDND1Q5T1B0 1012 aaPredicted RBP13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 MFSD6Q6ZSS7 791 aa13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 ZNF397Q8NF99 534 aaPredicted RBP13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 PYM1Q9BRP8 204 aaKnown RBP13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 TRIM35Q9UPQ4 493 aa13.74□□□□□ -0.21
DEPDC1-201ENST00000370966 HAND2P61296 217 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 TMOD2Q9NZR1 351 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 RBM27Q9P2N5 1060 aaKnown RBP13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 GCC2Q8IWJ2 1684 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 MSH6P52701 1360 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 CCDC194A0A1B0GVG4 234 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 GCP02774 474 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 ATP2B3Q16720 1220 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 KANK3Q6NY19 840 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 KLHL34Q8N239 644 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 PBRM1Q86U86 1689 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 HCLS1P14317 486 aaPredicted RBP13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 CHMLP26374 656 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 HOXC9P31274 260 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 TMTC2Q8N394 836 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 NECAB1Q8N987 351 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 USP26Q9BXU7 913 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 RAD50Q92878 1312 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 SEC24BO95487 1268 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 XRCC6P12956 609 aaKnown RBP eCLIP13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 KIF5BP33176 963 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 MICU3Q86XE3 530 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 ANKIB1Q9P2G1 1089 aa13.73□□□□□ -0.21
DEPDC1-201ENST00000370966 CCDC102BQ68D86 513 aa13.72□□□□□ -0.21
DEPDC1-201ENST00000370966 KLHL10Q6JEL2 608 aa13.72□□□□□ -0.21
DEPDC1-201ENST00000370966 C19orf44Q9H6X5 657 aa13.72□□□□□ -0.21
DEPDC1-201ENST00000370966 PRM3Q9NNZ6 103 aa13.72□□□□□ -0.21
DEPDC1-201ENST00000370966 KIAA1328Q86T90 577 aa13.72□□□□□ -0.21
DEPDC1-201ENST00000370966 GBP3Q9H0R5 595 aa13.72□□□□□ -0.21
DEPDC1-201ENST00000370966 DDX21Q9NR30 783 aaKnown RBP eCLIP13.72□□□□□ -0.21
DEPDC1-201ENST00000370966 MAGI3Q5TCQ9 1506 aa13.72□□□□□ -0.21
DEPDC1-201ENST00000370966 F13A1P00488 732 aa13.72□□□□□ -0.21
DEPDC1-201ENST00000370966 NLRP5P59047 1200 aa13.72□□□□□ -0.21
DEPDC1-201ENST00000370966 KLF18A0A0U1RQI7 1052 aa13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 ZNF76P36508 570 aa13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 KCNG4Q8TDN1 519 aa13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 JARID2Q92833 1246 aaPredicted RBP13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 SBNO1A3KN83 1393 aa13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 DCAF5Q96JK2 942 aa13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 DMRT2Q9Y5R5 561 aa13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 ARHGEF5Q12774 1597 aa13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 ADAMTS2O95450 1211 aa13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 FGFR1OPO95684 399 aaKnown RBP13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 PIP4K2BP78356 416 aa13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 PDE4BQ07343 736 aa13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 CCDC152Q4G0S7 254 aa13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 CCDC12Q8WUD4 166 aaPredicted RBP13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 PDCL3Q9H2J4 239 aa13.71□□□□□ -0.21
DEPDC1-201ENST00000370966 GOLGA6L10A6NI86 522 aa13.71□□□□□ -0.22
DEPDC1-201ENST00000370966 TNNT1P13805 278 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms