RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 GTF2F1P35269 517 aaKnown RBP eCLIP21.13■□□□□ 0.97
SHANK1-202ENST00000359082 SNW1Q13573 536 aaKnown RBP21.13■□□□□ 0.97
SHANK1-202ENST00000359082 WDHD1O75717 1129 aaPredicted RBP21.13■□□□□ 0.97
SHANK1-202ENST00000359082 LMAN1P49257 510 aa21.13■□□□□ 0.97
SHANK1-202ENST00000359082 BICD1Q96G01 975 aa21.13■□□□□ 0.97
SHANK1-202ENST00000359082 POTEB2H3BUK9 544 aa21.13■□□□□ 0.97
SHANK1-202ENST00000359082 GSDMDP57764 484 aa21.13■□□□□ 0.97
SHANK1-202ENST00000359082 MICU3Q86XE3 530 aa21.13■□□□□ 0.97
SHANK1-202ENST00000359082 CCDC12Q8WUD4 166 aaPredicted RBP21.13■□□□□ 0.97
SHANK1-202ENST00000359082 STX6O43752 255 aa21.13■□□□□ 0.97
SHANK1-202ENST00000359082 SERPINA10Q9UK55 444 aa21.13■□□□□ 0.97
SHANK1-202ENST00000359082 EPRSP07814 1512 aaKnown RBP21.13■□□□□ 0.97
SHANK1-202ENST00000359082 ZFP91Q96JP5 570 aaPredicted RBP21.12■□□□□ 0.97
SHANK1-202ENST00000359082 TTF1Q15361 905 aaPredicted RBP21.12■□□□□ 0.97
SHANK1-202ENST00000359082 TBC1D2Q9BYX2 928 aa21.12■□□□□ 0.97
SHANK1-202ENST00000359082 KIF5BP33176 963 aa21.11■□□□□ 0.97
SHANK1-202ENST00000359082 MFSD6Q6ZSS7 791 aa21.11■□□□□ 0.97
SHANK1-202ENST00000359082 JARID2Q92833 1246 aaPredicted RBP21.11■□□□□ 0.97
SHANK1-202ENST00000359082 ZSWIM4Q9H7M6 989 aa21.11■□□□□ 0.97
SHANK1-202ENST00000359082 PPM1EQ8WY54 764 aa21.11■□□□□ 0.97
SHANK1-202ENST00000359082 CUL7Q14999 1698 aa21.11■□□□□ 0.97
SHANK1-202ENST00000359082 ATP5J2-PTCD1G3V325 749 aa21.11■□□□□ 0.97
SHANK1-202ENST00000359082 GIGYF2Q6Y7W6 1299 aaKnown RBP21.11■□□□□ 0.97
SHANK1-202ENST00000359082 PUS7Q96PZ0 661 aaKnown RBP21.11■□□□□ 0.97
SHANK1-202ENST00000359082 PPP4R3BQ5MIZ7 849 aa21.1■□□□□ 0.97
SHANK1-202ENST00000359082 FSD2A1L4K1 749 aa21.1■□□□□ 0.97
SHANK1-202ENST00000359082 PDE4BQ07343 736 aa21.1■□□□□ 0.97
SHANK1-202ENST00000359082 EXOC1Q9NV70 894 aa21.1■□□□□ 0.97
SHANK1-202ENST00000359082 CCDC141Q6ZP82 1450 aa21.1■□□□□ 0.97
SHANK1-202ENST00000359082 NEMFO60524 1076 aa21.1■□□□□ 0.97
SHANK1-202ENST00000359082 CEP135Q66GS9 1140 aa21.1■□□□□ 0.97
SHANK1-202ENST00000359082 STXBP4Q6ZWJ1 553 aa21.1■□□□□ 0.97
SHANK1-202ENST00000359082 TBC1D9Q6ZT07 1266 aa21.1■□□□□ 0.97
SHANK1-202ENST00000359082 TSNARE1Q96NA8 513 aa21.09■□□□□ 0.97
SHANK1-202ENST00000359082 NAIPQ13075 1403 aa21.09■□□□□ 0.97
SHANK1-202ENST00000359082 NEK1Q96PY6 1258 aa21.09■□□□□ 0.97
SHANK1-202ENST00000359082 ORC3Q9UBD5 711 aaPredicted RBP21.09■□□□□ 0.97
SHANK1-202ENST00000359082 C11orf95C9JLR9 678 aaPredicted RBP21.09■□□□□ 0.97
SHANK1-202ENST00000359082 FAM107BQ9H098 131 aa21.09■□□□□ 0.97
SHANK1-202ENST00000359082 DBF4Q9UBU7 674 aaPredicted RBP21.09■□□□□ 0.97
SHANK1-202ENST00000359082 PTPRCP08575 1304 aa21.08■□□□□ 0.97
SHANK1-202ENST00000359082 FERP16591 822 aa21.08■□□□□ 0.97
SHANK1-202ENST00000359082 NCOA7Q8NI08 942 aa21.08■□□□□ 0.97
SHANK1-202ENST00000359082 TRIM47Q96LD4 638 aa21.08■□□□□ 0.97
SHANK1-202ENST00000359082 KIF14Q15058 1648 aa21.08■□□□□ 0.97
SHANK1-202ENST00000359082 FLIIQ13045 1269 aa21.08■□□□□ 0.96
SHANK1-202ENST00000359082 GRIPAP1Q4V328 841 aa21.08■□□□□ 0.96
SHANK1-202ENST00000359082 CWC25Q9NXE8 425 aaPredicted RBP21.08■□□□□ 0.96
SHANK1-202ENST00000359082 ABCC11Q96J66 1382 aa21.08■□□□□ 0.96
SHANK1-202ENST00000359082 CABP5Q9NP86 173 aa21.08■□□□□ 0.96
SHANK1-202ENST00000359082 CD109Q6YHK3 1445 aa21.07■□□□□ 0.96
SHANK1-202ENST00000359082 PABPN1LA6NDY0 278 aaKnown RBP21.07■□□□□ 0.96
SHANK1-202ENST00000359082 ATP2C2O75185 946 aa21.07■□□□□ 0.96
SHANK1-202ENST00000359082 CA8P35219 290 aa21.07■□□□□ 0.96
SHANK1-202ENST00000359082 HSF2BPO75031 334 aa21.07■□□□□ 0.96
SHANK1-202ENST00000359082 UBA7P41226 1012 aa21.07■□□□□ 0.96
SHANK1-202ENST00000359082 ECHDC1Q9NTX5 307 aa21.07■□□□□ 0.96
SHANK1-202ENST00000359082 TTC21AQ8NDW8 1320 aa21.07■□□□□ 0.96
SHANK1-202ENST00000359082 ABCA10Q8WWZ4 1543 aa21.07■□□□□ 0.96
SHANK1-202ENST00000359082 RGS22Q8NE09 1264 aa21.07■□□□□ 0.96
SHANK1-202ENST00000359082 PPP1R14CQ8TAE6 165 aa21.07■□□□□ 0.96
SHANK1-202ENST00000359082 MAGI1Q96QZ7 1491 aaPredicted RBP21.07■□□□□ 0.96
SHANK1-202ENST00000359082 TBCAO75347 108 aaKnown RBP21.06■□□□□ 0.96
SHANK1-202ENST00000359082 RRAGBQ5VZM2 374 aa21.06■□□□□ 0.96
SHANK1-202ENST00000359082 LDHAL6AQ6ZMR3 332 aa21.06■□□□□ 0.96
SHANK1-202ENST00000359082 TRIM27P14373 513 aa21.06■□□□□ 0.96
SHANK1-202ENST00000359082 CALCOCO1Q9P1Z2 691 aa21.06■□□□□ 0.96
SHANK1-202ENST00000359082 AFMP43652 599 aa21.06■□□□□ 0.96
SHANK1-202ENST00000359082 CEP112Q8N8E3 955 aa21.06■□□□□ 0.96
SHANK1-202ENST00000359082 BAG3O95817 575 aa21.06■□□□□ 0.96
SHANK1-202ENST00000359082 HLA-DOAP06340 250 aa21.06■□□□□ 0.96
SHANK1-202ENST00000359082 KANK3Q6NY19 840 aa21.06■□□□□ 0.96
SHANK1-202ENST00000359082 CDK13Q14004 1512 aaKnown RBP21.05■□□□□ 0.96
SHANK1-202ENST00000359082 IKBKGQ9Y6K9 419 aa21.05■□□□□ 0.96
SHANK1-202ENST00000359082 A0A1W2PRG0 241 aa21.05■□□□□ 0.96
SHANK1-202ENST00000359082 CCDC102BQ68D86 513 aa21.05■□□□□ 0.96
SHANK1-202ENST00000359082 CCDC174Q6PII3 467 aa21.05■□□□□ 0.96
SHANK1-202ENST00000359082 DDX46Q7L014 1031 aaKnown RBP21.05■□□□□ 0.96
SHANK1-202ENST00000359082 ZNF354CQ86Y25 554 aa21.05■□□□□ 0.96
SHANK1-202ENST00000359082 FAM135AQ9P2D6 1515 aa21.05■□□□□ 0.96
SHANK1-202ENST00000359082 TERF1P54274 439 aa21.05■□□□□ 0.96
SHANK1-202ENST00000359082 GNG11P61952 73 aa21.05■□□□□ 0.96
SHANK1-202ENST00000359082 SPECC1LQ69YQ0 1117 aa21.05■□□□□ 0.96
SHANK1-202ENST00000359082 TBC1D5Q92609 795 aa21.05■□□□□ 0.96
SHANK1-202ENST00000359082 ZNF622Q969S3 477 aaKnown RBP eCLIP21.05■□□□□ 0.96
SHANK1-202ENST00000359082 HSP90AA4PQ58FG1 418 aa21.05■□□□□ 0.96
SHANK1-202ENST00000359082 GPATCH11Q8N954 259 aa21.04■□□□□ 0.96
SHANK1-202ENST00000359082 CDC5LQ99459 802 aaKnown RBP21.04■□□□□ 0.96
SHANK1-202ENST00000359082 PAIP2Q9BPZ3 127 aaKnown RBP21.04■□□□□ 0.96
SHANK1-202ENST00000359082 SYNCQ9H7C4 482 aa21.04■□□□□ 0.96
SHANK1-202ENST00000359082 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.04■□□□□ 0.96
SHANK1-202ENST00000359082 PYM1Q9BRP8 204 aaKnown RBP21.04■□□□□ 0.96
SHANK1-202ENST00000359082 RNF216Q9NWF9 866 aaPredicted RBP21.04■□□□□ 0.96
SHANK1-202ENST00000359082 FERMT1Q9BQL6 677 aa21.04■□□□□ 0.96
SHANK1-202ENST00000359082 GIMAP6Q6P9H5 292 aa21.04■□□□□ 0.96
SHANK1-202ENST00000359082 ZNF165P49910 485 aa21.03■□□□□ 0.96
SHANK1-202ENST00000359082 GOLGA6L9A6NEM1 432 aa21.03■□□□□ 0.96
SHANK1-202ENST00000359082 N4BP3O15049 544 aa21.03■□□□□ 0.96
SHANK1-202ENST00000359082 KIAA0753Q2KHM9 967 aa21.03■□□□□ 0.96
SHANK1-202ENST00000359082 ZSCAN23Q3MJ62 389 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms