RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 PCCAP05165 728 aaPredicted RBP23.16■■□□□ 1.3
CLN3-204ENST00000357857 RABL6Q3YEC7 729 aaPredicted RBP23.16■■□□□ 1.3
CLN3-204ENST00000357857 SLC27A3Q5K4L6 730 aa23.16■■□□□ 1.3
CLN3-204ENST00000357857 ZNF34Q8IZ26 560 aa23.16■■□□□ 1.3
CLN3-204ENST00000357857 RTL5Q5HYW3 569 aaPredicted RBP23.16■■□□□ 1.3
CLN3-204ENST00000357857 LRRC4BQ9NT99 713 aa23.16■■□□□ 1.3
CLN3-204ENST00000357857 SMARCA5O60264 1052 aaPredicted RBP23.15■■□□□ 1.3
CLN3-204ENST00000357857 RAB11FIP3O75154 756 aa23.15■■□□□ 1.3
CLN3-204ENST00000357857 ZBTB38Q8NAP3 1195 aaPredicted RBP23.15■■□□□ 1.3
CLN3-204ENST00000357857 LRRCC1Q9C099 1032 aa23.15■■□□□ 1.3
CLN3-204ENST00000357857 ZNF652Q9Y2D9 606 aa23.15■■□□□ 1.3
CLN3-204ENST00000357857 RTCBQ9Y3I0 505 aaKnown RBP23.15■■□□□ 1.3
CLN3-204ENST00000357857 HSP90AB4PQ58FF6 505 aa23.14■■□□□ 1.3
CLN3-204ENST00000357857 NOP58Q9Y2X3 529 aaKnown RBP23.14■■□□□ 1.3
CLN3-204ENST00000357857 FOXO4P98177 505 aa23.13■■□□□ 1.29
CLN3-204ENST00000357857 TNS1Q9HBL0 1735 aaKnown RBP23.13■■□□□ 1.29
CLN3-204ENST00000357857 UBN2Q6ZU65 1347 aa23.13■■□□□ 1.29
CLN3-204ENST00000357857 AK7Q96M32 723 aa23.13■■□□□ 1.29
CLN3-204ENST00000357857 MYH3P11055 1940 aa23.13■■□□□ 1.29
CLN3-204ENST00000357857 C4AP0C0L4 1744 aa23.13■■□□□ 1.29
CLN3-204ENST00000357857 UBR3Q6ZT12 1888 aa23.13■■□□□ 1.29
CLN3-204ENST00000357857 RGL2O15211 777 aa23.12■■□□□ 1.29
CLN3-204ENST00000357857 CLEC4GQ6UXB4 293 aa23.12■■□□□ 1.29
CLN3-204ENST00000357857 FAM89AQ96GI7 184 aa23.12■■□□□ 1.29
CLN3-204ENST00000357857 CDHR2Q9BYE9 1310 aa23.12■■□□□ 1.29
CLN3-204ENST00000357857 LMBR1LQ6UX01 489 aa23.11■■□□□ 1.29
CLN3-204ENST00000357857 EP400Q96L91 3159 aa23.11■■□□□ 1.29
CLN3-204ENST00000357857 PARP10Q53GL7 1025 aa23.11■■□□□ 1.29
CLN3-204ENST00000357857 PLA2G12BQ9BX93 195 aa23.11■■□□□ 1.29
CLN3-204ENST00000357857 BCL11AQ9H165 835 aa23.11■■□□□ 1.29
CLN3-204ENST00000357857 NARFQ9UHQ1 456 aa23.11■■□□□ 1.29
CLN3-204ENST00000357857 TRMT112Q9UI30 125 aaKnown RBP23.11■■□□□ 1.29
CLN3-204ENST00000357857 PA2G4Q9UQ80 394 aaKnown RBP23.11■■□□□ 1.29
CLN3-204ENST00000357857 PLSCR1O15162 318 aa23.1■■□□□ 1.29
CLN3-204ENST00000357857 APBA3O96018 575 aa23.1■■□□□ 1.29
CLN3-204ENST00000357857 HMGB2P26583 209 aaKnown RBP23.1■■□□□ 1.29
CLN3-204ENST00000357857 OS9Q13438 667 aaPredicted RBP23.1■■□□□ 1.29
CLN3-204ENST00000357857 TXNRD1Q16881 649 aa23.1■■□□□ 1.29
CLN3-204ENST00000357857 FAM161AQ3B820 660 aa23.1■■□□□ 1.29
CLN3-204ENST00000357857 SMIM5Q71RC9 77 aa23.1■■□□□ 1.29
CLN3-204ENST00000357857 C16orf71Q8IYS4 520 aaPredicted RBP23.1■■□□□ 1.29
CLN3-204ENST00000357857 KIF1BPQ96EK5 621 aa23.1■■□□□ 1.29
CLN3-204ENST00000357857 RHPN1Q8TCX5 695 aa23.09■■□□□ 1.29
CLN3-204ENST00000357857 NIP7Q9Y221 180 aaKnown RBP eCLIP23.09■■□□□ 1.29
CLN3-204ENST00000357857 RFX5P48382 616 aaPredicted RBP23.08■■□□□ 1.29
CLN3-204ENST00000357857 ERC1Q8IUD2 1116 aa23.08■■□□□ 1.29
CLN3-204ENST00000357857 PLEKHM2Q8IWE5 1019 aa23.08■■□□□ 1.29
CLN3-204ENST00000357857 BACH2Q9BYV9 841 aa23.08■■□□□ 1.29
CLN3-204ENST00000357857 CHMP3Q9Y3E7 222 aa23.08■■□□□ 1.29
CLN3-204ENST00000357857 RGPD3A6NKT7 1758 aaPredicted RBP23.08■■□□□ 1.29
CLN3-204ENST00000357857 RGPD4Q7Z3J3 1758 aa23.08■■□□□ 1.29
CLN3-204ENST00000357857 ZPR1O75312 459 aa23.08■■□□□ 1.28
CLN3-204ENST00000357857 SUSD4Q5VX71 490 aa23.08■■□□□ 1.28
CLN3-204ENST00000357857 AMIGO3Q86WK7 504 aa23.08■■□□□ 1.28
CLN3-204ENST00000357857 COPRSQ9NQ92 184 aa23.08■■□□□ 1.28
CLN3-204ENST00000357857 G3BP1Q13283 466 aaKnown RBP eCLIP23.07■■□□□ 1.28
CLN3-204ENST00000357857 TRAPPC3LQ5T215 181 aa23.07■■□□□ 1.28
CLN3-204ENST00000357857 PROM2Q8N271 834 aa23.07■■□□□ 1.28
CLN3-204ENST00000357857 ARHGEF1Q92888 912 aaKnown RBP23.07■■□□□ 1.28
CLN3-204ENST00000357857 UTP14AQ9BVJ6 771 aaKnown RBP23.07■■□□□ 1.28
CLN3-204ENST00000357857 IRS4O14654 1257 aaPredicted RBP23.06■■□□□ 1.28
CLN3-204ENST00000357857 USPL1Q5W0Q7 1092 aa23.06■■□□□ 1.28
CLN3-204ENST00000357857 SYNE4Q8N205 404 aa23.06■■□□□ 1.28
CLN3-204ENST00000357857 OTUD7AQ8TE49 926 aaPredicted RBP23.06■■□□□ 1.28
CLN3-204ENST00000357857 SRP68Q9UHB9 627 aaKnown RBP23.06■■□□□ 1.28
CLN3-204ENST00000357857 LAMB2P55268 1798 aa23.06■■□□□ 1.28
CLN3-204ENST00000357857 ADRA2BP18089 450 aa23.05■■□□□ 1.28
CLN3-204ENST00000357857 C8orf34Q49A92 452 aa23.05■■□□□ 1.28
CLN3-204ENST00000357857 KLHDC4Q8TBB5 520 aa23.05■■□□□ 1.28
CLN3-204ENST00000357857 BCL2L12Q9HB09 334 aa23.05■■□□□ 1.28
CLN3-204ENST00000357857 IL1RAPL2Q9NP60 686 aa23.05■■□□□ 1.28
CLN3-204ENST00000357857 PHF14O94880 888 aa23.05■■□□□ 1.28
CLN3-204ENST00000357857 PTPN12Q05209 780 aaKnown RBP23.05■■□□□ 1.28
CLN3-204ENST00000357857 SIL1Q9H173 461 aa23.05■■□□□ 1.28
CLN3-204ENST00000357857 SH3TC1Q8TE82 1336 aa23.04■■□□□ 1.28
CLN3-204ENST00000357857 DDX60Q8IY21 1712 aaKnown RBP23.04■■□□□ 1.28
CLN3-204ENST00000357857 SOCS7O14512 581 aa23.04■■□□□ 1.28
CLN3-204ENST00000357857 RFC4P35249 363 aa23.04■■□□□ 1.28
CLN3-204ENST00000357857 COL24A1Q17RW2 1714 aa23.04■■□□□ 1.28
CLN3-204ENST00000357857 FAM177BA6PVY3 158 aa23.03■■□□□ 1.28
CLN3-204ENST00000357857 CSF1RP07333 972 aa23.03■■□□□ 1.28
CLN3-204ENST00000357857 USP42Q9H9J4 1324 aaKnown RBP23.03■■□□□ 1.28
CLN3-204ENST00000357857 PDE8AO60658 829 aa23.02■■□□□ 1.28
CLN3-204ENST00000357857 NTSR2O95665 410 aa23.02■■□□□ 1.28
CLN3-204ENST00000357857 BMP2KLQ5H9B9 411 aa23.02■■□□□ 1.28
CLN3-204ENST00000357857 SALL3Q9BXA9 1300 aa23.02■■□□□ 1.28
CLN3-204ENST00000357857 CTSWP56202 376 aa23.02■■□□□ 1.28
CLN3-204ENST00000357857 TBC1D9BQ66K14 1250 aa23.02■■□□□ 1.28
CLN3-204ENST00000357857 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.01■■□□□ 1.27
CLN3-204ENST00000357857 SASH1O94885 1247 aa23.01■■□□□ 1.27
CLN3-204ENST00000357857 SSFA2P28290 1259 aa23.01■■□□□ 1.27
CLN3-204ENST00000357857 PDE1AP54750 535 aa23■■□□□ 1.27
CLN3-204ENST00000357857 CCDC57Q2TAC2 916 aa23■■□□□ 1.27
CLN3-204ENST00000357857 TTC22Q5TAA0 569 aa23■■□□□ 1.27
CLN3-204ENST00000357857 CLASRPQ8N2M8 674 aaKnown RBP23■■□□□ 1.27
CLN3-204ENST00000357857 OSBPL3Q9H4L5 887 aa23■■□□□ 1.27
CLN3-204ENST00000357857 HSP90B1P14625 803 aaKnown RBP22.99■■□□□ 1.27
CLN3-204ENST00000357857 MX1P20591 662 aa22.99■■□□□ 1.27
CLN3-204ENST00000357857 BICDL1Q6ZP65 573 aa22.99■■□□□ 1.27
CLN3-204ENST00000357857 TTLL11Q8NHH1 800 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms