RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 MMP10P09238 476 aa11.28□□□□□ -0.6
UPF2-202ENST00000357604 MCCP23508 829 aa11.28□□□□□ -0.6
UPF2-202ENST00000357604 WASHC4Q2M389 1173 aa11.28□□□□□ -0.6
UPF2-202ENST00000357604 GIGYF2Q6Y7W6 1299 aaKnown RBP11.27□□□□□ -0.6
UPF2-202ENST00000357604 RTKN2Q8IZC4 609 aa11.27□□□□□ -0.6
UPF2-202ENST00000357604 COG6Q9Y2V7 657 aa11.27□□□□□ -0.6
UPF2-202ENST00000357604 KDM6AO15550 1401 aaPredicted RBP11.27□□□□□ -0.6
UPF2-202ENST00000357604 MFAP1P55081 439 aaKnown RBP11.27□□□□□ -0.61
UPF2-202ENST00000357604 ZGPATQ8N5A5 531 aaKnown RBP11.27□□□□□ -0.61
UPF2-202ENST00000357604 KCNQ3O43525 872 aa11.27□□□□□ -0.61
UPF2-202ENST00000357604 SPTY2D1Q68D10 685 aaPredicted RBP11.27□□□□□ -0.61
UPF2-202ENST00000357604 CLASRPQ8N2M8 674 aaKnown RBP11.27□□□□□ -0.61
UPF2-202ENST00000357604 ZNF853P0CG23 659 aa11.27□□□□□ -0.61
UPF2-202ENST00000357604 UBE3BQ7Z3V4 1068 aa11.27□□□□□ -0.61
UPF2-202ENST00000357604 USP16Q9Y5T5 823 aa11.26□□□□□ -0.61
UPF2-202ENST00000357604 PCCAP05165 728 aaPredicted RBP11.26□□□□□ -0.61
UPF2-202ENST00000357604 KIAA1211Q6ZU35 1233 aa11.26□□□□□ -0.61
UPF2-202ENST00000357604 PIP4K2AP48426 406 aaPredicted RBP11.26□□□□□ -0.61
UPF2-202ENST00000357604 ARHGAP27Q6ZUM4 889 aa11.26□□□□□ -0.61
UPF2-202ENST00000357604 GCC1Q96CN9 775 aa11.26□□□□□ -0.61
UPF2-202ENST00000357604 MYO1BO43795 1136 aa11.26□□□□□ -0.61
UPF2-202ENST00000357604 SURF6O75683 361 aaKnown RBP11.26□□□□□ -0.61
UPF2-202ENST00000357604 CCDC93Q567U6 631 aa11.26□□□□□ -0.61
UPF2-202ENST00000357604 DPY19L2Q6NUT2 758 aa11.26□□□□□ -0.61
UPF2-202ENST00000357604 NIM1KQ8IY84 436 aa11.26□□□□□ -0.61
UPF2-202ENST00000357604 ZBTB38Q8NAP3 1195 aaPredicted RBP11.26□□□□□ -0.61
UPF2-202ENST00000357604 PPEF1O14829 653 aaPredicted RBP11.25□□□□□ -0.61
UPF2-202ENST00000357604 TGFB2P61812 414 aa11.25□□□□□ -0.61
UPF2-202ENST00000357604 GSTO1P78417 241 aa11.25□□□□□ -0.61
UPF2-202ENST00000357604 GGA1Q9UJY5 639 aa11.25□□□□□ -0.61
UPF2-202ENST00000357604 SRGAP3O43295 1099 aa11.25□□□□□ -0.61
UPF2-202ENST00000357604 DPP8Q6V1X1 898 aaPredicted RBP11.25□□□□□ -0.61
UPF2-202ENST00000357604 NRAPQ86VF7 1730 aa11.25□□□□□ -0.61
UPF2-202ENST00000357604 TTLL6Q8N841 843 aa11.25□□□□□ -0.61
UPF2-202ENST00000357604 CAMKK2Q96RR4 588 aa11.25□□□□□ -0.61
UPF2-202ENST00000357604 GLI3P10071 1580 aa11.24□□□□□ -0.61
UPF2-202ENST00000357604 ANXA1P04083 346 aa11.24□□□□□ -0.61
UPF2-202ENST00000357604 LRRC37A3O60309 1634 aa11.24□□□□□ -0.61
UPF2-202ENST00000357604 ATP10DQ9P241 1426 aa11.24□□□□□ -0.61
UPF2-202ENST00000357604 BBOX1O75936 387 aa11.24□□□□□ -0.61
UPF2-202ENST00000357604 RBM5P52756 815 aaKnown RBP eCLIP11.24□□□□□ -0.61
UPF2-202ENST00000357604 CD2APQ9Y5K6 639 aa11.24□□□□□ -0.61
UPF2-202ENST00000357604 HIP1O00291 1037 aa11.24□□□□□ -0.61
UPF2-202ENST00000357604 UQCRFS1P1P0C7P4 283 aa11.24□□□□□ -0.61
UPF2-202ENST00000357604 USP42Q9H9J4 1324 aaKnown RBP11.24□□□□□ -0.61
UPF2-202ENST00000357604 LDHAL6AQ6ZMR3 332 aa11.23□□□□□ -0.61
UPF2-202ENST00000357604 ZC3H12CQ9C0D7 883 aaKnown RBP11.23□□□□□ -0.61
UPF2-202ENST00000357604 MPNDQ8N594 471 aa11.23□□□□□ -0.61
UPF2-202ENST00000357604 RUFY2Q8WXA3 655 aa11.23□□□□□ -0.61
UPF2-202ENST00000357604 SRP68Q9UHB9 627 aaKnown RBP11.23□□□□□ -0.61
UPF2-202ENST00000357604 F6X3S4 739 aa11.23□□□□□ -0.61
UPF2-202ENST00000357604 ATP2B4P23634 1241 aa11.23□□□□□ -0.61
UPF2-202ENST00000357604 STYK1Q6J9G0 422 aa11.23□□□□□ -0.61
UPF2-202ENST00000357604 TRIM6-TRIM34B2RNG4 842 aa11.23□□□□□ -0.61
UPF2-202ENST00000357604 BCAR3O75815 825 aa11.23□□□□□ -0.61
UPF2-202ENST00000357604 ITPK1Q13572 414 aa11.23□□□□□ -0.61
UPF2-202ENST00000357604 PANK1Q8TE04 598 aa11.23□□□□□ -0.61
UPF2-202ENST00000357604 MROH5Q6ZUA9 1318 aa11.23□□□□□ -0.61
UPF2-202ENST00000357604 IRX6P78412 446 aaPredicted RBP11.22□□□□□ -0.61
UPF2-202ENST00000357604 BRIP1Q9BX63 1249 aa11.22□□□□□ -0.61
UPF2-202ENST00000357604 LRRCC1Q9C099 1032 aa11.22□□□□□ -0.61
UPF2-202ENST00000357604 PHAXQ9H814 394 aaKnown RBP11.22□□□□□ -0.61
UPF2-202ENST00000357604 MAST3O60307 1309 aa11.22□□□□□ -0.61
UPF2-202ENST00000357604 IL15P40933 162 aaPredicted RBP11.22□□□□□ -0.61
UPF2-202ENST00000357604 CTSWP56202 376 aa11.22□□□□□ -0.61
UPF2-202ENST00000357604 SLC3A2P08195 630 aaKnown RBP11.22□□□□□ -0.61
UPF2-202ENST00000357604 CRBNQ96SW2 442 aa11.22□□□□□ -0.61
UPF2-202ENST00000357604 LDHCP07864 332 aa11.22□□□□□ -0.61
UPF2-202ENST00000357604 KCNQ4P56696 695 aa11.22□□□□□ -0.61
UPF2-202ENST00000357604 RGS17Q9UGC6 210 aaPredicted RBP11.22□□□□□ -0.61
UPF2-202ENST00000357604 CENPQQ7L2Z9 268 aaPredicted RBP11.22□□□□□ -0.61
UPF2-202ENST00000357604 COL23A1Q86Y22 540 aaPredicted RBP11.22□□□□□ -0.61
UPF2-202ENST00000357604 WDHD1O75717 1129 aaPredicted RBP11.21□□□□□ -0.61
UPF2-202ENST00000357604 ANKRD45Q5TZF3 282 aa11.21□□□□□ -0.61
UPF2-202ENST00000357604 LARGE2Q8N3Y3 721 aa11.21□□□□□ -0.61
UPF2-202ENST00000357604 TMEM57Q8N5G2 664 aa11.21□□□□□ -0.61
UPF2-202ENST00000357604 TSPYL6Q8N831 410 aa11.21□□□□□ -0.61
UPF2-202ENST00000357604 CCDC85AQ96PX6 553 aaPredicted RBP11.21□□□□□ -0.61
UPF2-202ENST00000357604 TTF1Q15361 905 aaPredicted RBP11.21□□□□□ -0.61
UPF2-202ENST00000357604 TTLL7Q6ZT98 887 aa11.21□□□□□ -0.61
UPF2-202ENST00000357604 NEURL1BA8MQ27 555 aa11.21□□□□□ -0.62
UPF2-202ENST00000357604 NF2P35240 595 aa11.21□□□□□ -0.62
UPF2-202ENST00000357604 EIF5P55010 431 aaKnown RBP11.21□□□□□ -0.62
UPF2-202ENST00000357604 TNIP1Q15025 636 aa11.21□□□□□ -0.62
UPF2-202ENST00000357604 LRRFIP2Q9Y608 721 aaKnown RBP11.21□□□□□ -0.62
UPF2-202ENST00000357604 IBTKQ9P2D0 1353 aaPredicted RBP11.21□□□□□ -0.62
UPF2-202ENST00000357604 GCKRQ14397 625 aa11.21□□□□□ -0.62
UPF2-202ENST00000357604 KIF1BPQ96EK5 621 aa11.21□□□□□ -0.62
UPF2-202ENST00000357604 SIL1Q9H173 461 aa11.21□□□□□ -0.62
UPF2-202ENST00000357604 THSD7AQ9UPZ6 1657 aa11.2□□□□□ -0.62
UPF2-202ENST00000357604 UFL1O94874 794 aa11.2□□□□□ -0.62
UPF2-202ENST00000357604 OGFOD1Q8N543 542 aa11.2□□□□□ -0.62
UPF2-202ENST00000357604 CDHR2Q9BYE9 1310 aa11.2□□□□□ -0.62
UPF2-202ENST00000357604 ERFEQ4G0M1 354 aa11.2□□□□□ -0.62
UPF2-202ENST00000357604 ITGA6P23229 1130 aa11.2□□□□□ -0.62
UPF2-202ENST00000357604 TBC1D9BQ66K14 1250 aa11.2□□□□□ -0.62
UPF2-202ENST00000357604 INTS5Q6P9B9 1019 aaKnown RBP11.19□□□□□ -0.62
UPF2-202ENST00000357604 BRPF1P55201 1214 aaPredicted RBP11.19□□□□□ -0.62
UPF2-202ENST00000357604 GRAPQ13588 217 aa11.19□□□□□ -0.62
UPF2-202ENST00000357604 KRT24Q2M2I5 525 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms