RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 SSFA2P28290 1259 aa20.8■□□□□ 0.92
COL18A1-202ENST00000355480 PANK2Q9BZ23 570 aa20.8■□□□□ 0.92
COL18A1-202ENST00000355480 DENND4BO75064 1496 aaPredicted RBP20.8■□□□□ 0.92
COL18A1-202ENST00000355480 SCAF11Q99590 1463 aaKnown RBP20.8■□□□□ 0.92
COL18A1-202ENST00000355480 USP8P40818 1118 aa20.8■□□□□ 0.92
COL18A1-202ENST00000355480 TSHZ3Q63HK5 1081 aa20.79■□□□□ 0.92
COL18A1-202ENST00000355480 BIN1O00499 593 aa20.79■□□□□ 0.92
COL18A1-202ENST00000355480 URI1O94763 535 aaPredicted RBP20.79■□□□□ 0.92
COL18A1-202ENST00000355480 TNNT1P13805 278 aa20.79■□□□□ 0.92
COL18A1-202ENST00000355480 UBA7P41226 1012 aa20.79■□□□□ 0.92
COL18A1-202ENST00000355480 C14orf93Q9H972 538 aaKnown RBP20.79■□□□□ 0.92
COL18A1-202ENST00000355480 PTPN23Q9H3S7 1636 aa20.79■□□□□ 0.92
COL18A1-202ENST00000355480 STXBP4Q6ZWJ1 553 aa20.79■□□□□ 0.92
COL18A1-202ENST00000355480 PPFIA3O75145 1194 aa20.79■□□□□ 0.92
COL18A1-202ENST00000355480 SYCP3Q8IZU3 236 aa20.79■□□□□ 0.92
COL18A1-202ENST00000355480 FERMT2Q96AC1 680 aa20.79■□□□□ 0.92
COL18A1-202ENST00000355480 CTNNA2P26232 953 aa20.78■□□□□ 0.92
COL18A1-202ENST00000355480 TMCO3Q6UWJ1 677 aa20.78■□□□□ 0.92
COL18A1-202ENST00000355480 GOPCQ9HD26 462 aa20.78■□□□□ 0.92
COL18A1-202ENST00000355480 DDX19AQ9NUU7 478 aaKnown RBP20.78■□□□□ 0.92
COL18A1-202ENST00000355480 STX8Q9UNK0 236 aa20.78■□□□□ 0.92
COL18A1-202ENST00000355480 PCF11O94913 1555 aaKnown RBP20.78■□□□□ 0.92
COL18A1-202ENST00000355480 IL27Q8NEV9 243 aa20.77■□□□□ 0.92
COL18A1-202ENST00000355480 PAFAH1B1P43034 410 aa20.77■□□□□ 0.92
COL18A1-202ENST00000355480 ACSBG1Q96GR2 724 aa20.77■□□□□ 0.92
COL18A1-202ENST00000355480 TBC1D9Q6ZT07 1266 aa20.77■□□□□ 0.92
COL18A1-202ENST00000355480 ZCRB1Q8TBF4 217 aaKnown RBP20.77■□□□□ 0.92
COL18A1-202ENST00000355480 TTC21AQ8NDW8 1320 aa20.77■□□□□ 0.92
COL18A1-202ENST00000355480 HOOK3Q86VS8 718 aa20.77■□□□□ 0.92
COL18A1-202ENST00000355480 KIF18AQ8NI77 898 aa20.77■□□□□ 0.92
COL18A1-202ENST00000355480 HMG20BQ9P0W2 317 aa20.77■□□□□ 0.91
COL18A1-202ENST00000355480 MSH6P52701 1360 aa20.76■□□□□ 0.91
COL18A1-202ENST00000355480 STX6O43752 255 aa20.76■□□□□ 0.91
COL18A1-202ENST00000355480 ZSCAN30Q86W11 494 aa20.76■□□□□ 0.91
COL18A1-202ENST00000355480 IFFO1Q0D2I5 559 aa20.76■□□□□ 0.91
COL18A1-202ENST00000355480 SETDB2Q96T68 719 aa20.76■□□□□ 0.91
COL18A1-202ENST00000355480 ATP6V1AP38606 617 aa20.76■□□□□ 0.91
COL18A1-202ENST00000355480 MAP9Q49MG5 647 aa20.76■□□□□ 0.91
COL18A1-202ENST00000355480 GDPD2Q9HCC8 539 aa20.76■□□□□ 0.91
COL18A1-202ENST00000355480 MAP2K1Q02750 393 aaPredicted RBP20.76■□□□□ 0.91
COL18A1-202ENST00000355480 MPHOSPH6Q99547 160 aaKnown RBP20.75■□□□□ 0.91
COL18A1-202ENST00000355480 CHPF2Q9P2E5 772 aa20.75■□□□□ 0.91
COL18A1-202ENST00000355480 DRC1Q96MC2 740 aa20.75■□□□□ 0.91
COL18A1-202ENST00000355480 PYM1Q9BRP8 204 aaKnown RBP20.75■□□□□ 0.91
COL18A1-202ENST00000355480 ABCA10Q8WWZ4 1543 aa20.75■□□□□ 0.91
COL18A1-202ENST00000355480 TSPY3P0CV98 308 aa20.75■□□□□ 0.91
COL18A1-202ENST00000355480 TSPY8P0CW00 308 aa20.75■□□□□ 0.91
COL18A1-202ENST00000355480 PRC1O43663 620 aa20.74■□□□□ 0.91
COL18A1-202ENST00000355480 MCM5P33992 734 aa20.74■□□□□ 0.91
COL18A1-202ENST00000355480 FANCAO15360 1455 aa20.74■□□□□ 0.91
COL18A1-202ENST00000355480 CYP7A1P22680 504 aa20.74■□□□□ 0.91
COL18A1-202ENST00000355480 WTAPQ15007 396 aa20.74■□□□□ 0.91
COL18A1-202ENST00000355480 TMX1Q9H3N1 280 aa20.74■□□□□ 0.91
COL18A1-202ENST00000355480 XAGE3Q8WTP9 111 aa20.74■□□□□ 0.91
COL18A1-202ENST00000355480 F8W031 263 aaPredicted RBP20.74■□□□□ 0.91
COL18A1-202ENST00000355480 STX1AQ16623 288 aa20.74■□□□□ 0.91
COL18A1-202ENST00000355480 FAM114A1Q8IWE2 563 aa20.74■□□□□ 0.91
COL18A1-202ENST00000355480 PUF60Q9UHX1 559 aaKnown RBP20.74■□□□□ 0.91
COL18A1-202ENST00000355480 IQSEC3Q9UPP2 1182 aaPredicted RBP20.74■□□□□ 0.91
COL18A1-202ENST00000355480 ANKRD36BQ8N2N9 1353 aa20.73■□□□□ 0.91
COL18A1-202ENST00000355480 TMCO5BA8MYB1 307 aa20.73■□□□□ 0.91
COL18A1-202ENST00000355480 RHPN1Q8TCX5 695 aa20.73■□□□□ 0.91
COL18A1-202ENST00000355480 TNPO1Q92973 898 aaKnown RBP20.73■□□□□ 0.91
COL18A1-202ENST00000355480 TNRQ92752 1358 aa20.73■□□□□ 0.91
COL18A1-202ENST00000355480 FBLN1P23142 703 aa20.73■□□□□ 0.91
COL18A1-202ENST00000355480 BMP2KLQ5H9B9 411 aa20.73■□□□□ 0.91
COL18A1-202ENST00000355480 TTC22Q5TAA0 569 aa20.73■□□□□ 0.91
COL18A1-202ENST00000355480 PDCL2Q8N4E4 241 aa20.73■□□□□ 0.91
COL18A1-202ENST00000355480 BICD1Q96G01 975 aa20.73■□□□□ 0.91
COL18A1-202ENST00000355480 TBCAO75347 108 aaKnown RBP20.73■□□□□ 0.91
COL18A1-202ENST00000355480 USP25Q9UHP3 1055 aa20.73■□□□□ 0.91
COL18A1-202ENST00000355480 ALS2CR12Q96Q35 445 aa20.72■□□□□ 0.91
COL18A1-202ENST00000355480 TBC1D2Q9BYX2 928 aa20.72■□□□□ 0.91
COL18A1-202ENST00000355480 MCM3P25205 808 aa20.72■□□□□ 0.91
COL18A1-202ENST00000355480 LRRC27Q9C0I9 530 aa20.72■□□□□ 0.91
COL18A1-202ENST00000355480 HDAC9Q9UKV0 1011 aa20.72■□□□□ 0.91
COL18A1-202ENST00000355480 DHX29Q7Z478 1369 aaKnown RBP20.72■□□□□ 0.91
COL18A1-202ENST00000355480 ISM2Q6H9L7 571 aa20.72■□□□□ 0.91
COL18A1-202ENST00000355480 KANK3Q6NY19 840 aa20.72■□□□□ 0.91
COL18A1-202ENST00000355480 TMC6Q7Z403 805 aa20.72■□□□□ 0.91
COL18A1-202ENST00000355480 TRMT1Q9NXH9 659 aaKnown RBP20.72■□□□□ 0.91
COL18A1-202ENST00000355480 ATP2B3Q16720 1220 aa20.72■□□□□ 0.91
COL18A1-202ENST00000355480 COPS6Q7L5N1 327 aa20.72■□□□□ 0.91
COL18A1-202ENST00000355480 SLC4A4Q9Y6R1 1079 aa20.72■□□□□ 0.91
COL18A1-202ENST00000355480 KLF18A0A0U1RQI7 1052 aa20.71■□□□□ 0.91
COL18A1-202ENST00000355480 NBPF7P0C2Y1 421 aaPredicted RBP20.71■□□□□ 0.91
COL18A1-202ENST00000355480 CCDC102BQ68D86 513 aa20.71■□□□□ 0.91
COL18A1-202ENST00000355480 ZGPATQ8N5A5 531 aaKnown RBP20.71■□□□□ 0.91
COL18A1-202ENST00000355480 NLRP3Q96P20 1036 aa20.71■□□□□ 0.91
COL18A1-202ENST00000355480 KRT23Q9C075 422 aa20.71■□□□□ 0.91
COL18A1-202ENST00000355480 SLC39A6Q13433 755 aa20.71■□□□□ 0.91
COL18A1-202ENST00000355480 IL16Q14005 1332 aa20.71■□□□□ 0.91
COL18A1-202ENST00000355480 GRIN2AQ12879 1464 aa20.71■□□□□ 0.91
COL18A1-202ENST00000355480 CCDC174Q6PII3 467 aa20.71■□□□□ 0.91
COL18A1-202ENST00000355480 IFIT1BQ5T764 474 aaKnown RBP20.7■□□□□ 0.9
COL18A1-202ENST00000355480 UBAP1LF5GYI3 381 aa20.7■□□□□ 0.9
COL18A1-202ENST00000355480 PRPF4BQ13523 1007 aaKnown RBP20.7■□□□□ 0.9
COL18A1-202ENST00000355480 BRF1Q92994 677 aa20.7■□□□□ 0.9
COL18A1-202ENST00000355480 ZFYP08048 801 aaPredicted RBP20.7■□□□□ 0.9
COL18A1-202ENST00000355480 NOP2P46087 812 aaKnown RBP20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 143.4 ms