RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 NAPBQ9H115 298 aa11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 KDM2BQ8NHM5 1336 aa11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 REREQ9P2R6 1566 aa11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 TMX3Q96JJ7 454 aa11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 SIL1Q9H173 461 aa11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 DCTPP1Q9H773 170 aa11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 XPCQ01831 940 aaPredicted RBP11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 NOLC1Q14978 699 aaKnown RBP eCLIP11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 FSIP1Q8NA03 581 aa11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 WWC2Q6AWC2 1192 aa11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 GIGYF2Q6Y7W6 1299 aaKnown RBP11.86□□□□□ -0.51
CCDC88A-202ENST00000336838 GOLGA8BA8MQT2 603 aa11.85□□□□□ -0.51
CCDC88A-202ENST00000336838 BRAPQ7Z569 592 aa11.85□□□□□ -0.51
CCDC88A-202ENST00000336838 ESYT1Q9BSJ8 1104 aa11.85□□□□□ -0.51
CCDC88A-202ENST00000336838 CAMK4Q16566 473 aa11.85□□□□□ -0.51
CCDC88A-202ENST00000336838 SETD1BQ9UPS6 1966 aaKnown RBP11.85□□□□□ -0.51
CCDC88A-202ENST00000336838 FAM193AP78312 1265 aa11.85□□□□□ -0.51
CCDC88A-202ENST00000336838 CATIPQ7Z7H3 387 aa11.85□□□□□ -0.51
CCDC88A-202ENST00000336838 IGHDP01880 384 aa11.85□□□□□ -0.51
CCDC88A-202ENST00000336838 KIF4BQ2VIQ3 1234 aa11.85□□□□□ -0.51
CCDC88A-202ENST00000336838 NUP88Q99567 741 aaPredicted RBP11.85□□□□□ -0.51
CCDC88A-202ENST00000336838 PDE1AP54750 535 aa11.85□□□□□ -0.51
CCDC88A-202ENST00000336838 STMN4Q9H169 189 aaPredicted RBP11.85□□□□□ -0.51
CCDC88A-202ENST00000336838 SPATA31E1Q6ZUB1 1445 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 ENOX2Q16206 610 aaKnown RBP11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 GIMAP7Q8NHV1 300 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 TANGO6Q9C0B7 1094 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 TRPM1Q7Z4N2 1603 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 IBTKQ9P2D0 1353 aaPredicted RBP11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 ADGRF5Q8IZF2 1346 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 ZNF213O14771 459 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 IFIT1P09914 478 aaKnown RBP11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 CETN1Q12798 172 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 IFIT5Q13325 482 aaKnown RBP11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 SDSP20132 328 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 CYB5RLQ6IPT4 315 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 NCOA7Q8NI08 942 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 PLVAPQ9BX97 442 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 NPATQ14207 1427 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 FLT4P35916 1363 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 PATL2C9JE40 543 aaKnown RBP11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 SLC5A1P13866 664 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 PRPHP41219 470 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 IL1RAPL2Q9NP60 686 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 ZNF445P59923 1031 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 SPECC1LQ69YQ0 1117 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 EDC4Q6P2E9 1401 aaKnown RBP11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 KRT23Q9C075 422 aa11.84□□□□□ -0.51
CCDC88A-202ENST00000336838 UHRF1BP1LA0JNW5 1464 aa11.83□□□□□ -0.51
CCDC88A-202ENST00000336838 SMC1AQ14683 1233 aaKnown RBP11.83□□□□□ -0.51
CCDC88A-202ENST00000336838 NEK1Q96PY6 1258 aa11.83□□□□□ -0.51
CCDC88A-202ENST00000336838 F13A1P00488 732 aa11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 TNIP1Q15025 636 aa11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 ZFYVE27Q5T4F4 411 aa11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 TESK2Q96S53 571 aa11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 RAD21O60216 631 aa11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 LRP2BPQ9P2M1 347 aa11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 ZBTB40Q9NUA8 1239 aa11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 STXBP4Q6ZWJ1 553 aa11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 NUTM1Q86Y26 1132 aa11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 NUP133Q8WUM0 1156 aa11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 LLPHQ9BRT6 129 aaKnown RBP11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 CAVIN4Q5BKX8 364 aa11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 PRM3Q9NNZ6 103 aa11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 MCM10Q7L590 875 aa11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 SMAP1Q8IYB5 467 aaPredicted RBP11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 SMARCC1Q92922 1105 aaPredicted RBP11.83□□□□□ -0.52
CCDC88A-202ENST00000336838 CTAGE9A4FU28 777 aa11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 HOXB7P09629 217 aa11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 MRPS27Q92552 414 aaKnown RBP11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 EHMT1Q9H9B1 1298 aa11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 MYOM2P54296 1465 aa11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 ATP2B1P20020 1258 aa11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 RIMS2Q9UQ26 1411 aa11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 URI1O94763 535 aaPredicted RBP11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 PPP1R2P41236 205 aa11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 PDE4CQ08493 712 aa11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 CEP152O94986 1710 aa11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 TSGA10Q9BZW7 698 aa11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 TCP11L1Q9NUJ3 509 aa11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 SLU7O95391 586 aaKnown RBP11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 TARBP1Q13395 1621 aaKnown RBP11.82□□□□□ -0.52
CCDC88A-202ENST00000336838 TRAF1Q13077 416 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 IKQ13123 557 aaPredicted RBP11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 METTL24Q5JXM2 366 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 CCDC175P0C221 793 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 CACNA2D4Q7Z3S7 1137 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 MRPL50Q8N5N7 158 aaKnown RBP11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 PCDHB15Q9Y5E8 787 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 CACNA1FO60840 1977 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 IMPACTQ9P2X3 320 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 TMC6Q7Z403 805 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 FAM177A1Q8N128 213 aaPredicted RBP11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 OGFRQ9NZT2 677 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 ZNF608Q9ULD9 1512 aaPredicted RBP11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 FYB1O15117 783 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 GNAT2P19087 354 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 SYKP43405 635 aa11.81□□□□□ -0.52
CCDC88A-202ENST00000336838 MAP4K4O95819 1239 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms