RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 LMBR1Q8WVP7 490 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 GBP5Q96PP8 586 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 CNGA1P29973 690 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 AMPD3Q01432 767 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 CFAP157Q5JU67 520 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 CCDC62Q6P9F0 684 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 KRBA2Q6ZNG9 492 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 FSIP1Q8NA03 581 aa7.05□□□□□ -1.28
CSMD1-201ENST00000335551 GIGYF1O75420 1035 aaPredicted RBP7.05□□□□□ -1.28
CSMD1-201ENST00000335551 NKTRP30414 1462 aaKnown RBP7.04□□□□□ -1.28
CSMD1-201ENST00000335551 FYB2Q5VWT5 728 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 ATP2B2Q01814 1243 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 ODF2LQ9ULJ1 636 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 LRRC27Q9C0I9 530 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 HNRNPMP52272 730 aaKnown RBP eCLIP7.04□□□□□ -1.28
CSMD1-201ENST00000335551 NEDD9Q14511 834 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 PRR16Q569H4 304 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 CKAP2LQ8IYA6 745 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 AKR1B10O60218 316 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 ZEB2O60315 1214 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 CEP85LQ5SZL2 805 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 NKIRAS1Q9NYS0 192 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 MTRF1LQ9UGC7 380 aaKnown RBP7.04□□□□□ -1.28
CSMD1-201ENST00000335551 SELENOSQ9BQE4 189 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 ZKSCAN5Q9Y2L8 839 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 GAPVD1Q14C86 1478 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 LRSAM1Q6UWE0 723 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 CWC27Q6UX04 472 aaKnown RBP7.04□□□□□ -1.28
CSMD1-201ENST00000335551 BANK1Q8NDB2 785 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 DDX27Q96GQ7 796 aaKnown RBP7.04□□□□□ -1.28
CSMD1-201ENST00000335551 TRIM4Q9C037 500 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 C1orf115Q9H7X2 142 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 LIMCH1Q9UPQ0 1083 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 MIER3Q7Z3K6 550 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 EPSTI1Q96J88 318 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 MGEA5O60502 916 aa7.04□□□□□ -1.28
CSMD1-201ENST00000335551 ZSWIM4Q9H7M6 989 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 SETD1BQ9UPS6 1966 aaKnown RBP7.03□□□□□ -1.28
CSMD1-201ENST00000335551 TRIM35Q9UPQ4 493 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 SPAG1Q07617 926 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 CCDC170Q8IYT3 715 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 CCDC40Q4G0X9 1142 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 PAXIP1Q6ZW49 1069 aaPredicted RBP7.03□□□□□ -1.28
CSMD1-201ENST00000335551 FAM200AQ8TCP9 573 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 DRC1Q96MC2 740 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 TUBB2AQ13885 445 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 TWISTNBQ3B726 338 aaPredicted RBP7.03□□□□□ -1.28
CSMD1-201ENST00000335551 ATF7IPQ6VMQ6 1270 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 SEC62Q99442 399 aaKnown RBP7.03□□□□□ -1.28
CSMD1-201ENST00000335551 TUBB2BQ9BVA1 445 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 CNNM1Q9NRU3 951 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 PDE1CQ14123 709 aaPredicted RBP7.03□□□□□ -1.28
CSMD1-201ENST00000335551 MCUR1Q96AQ8 359 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 MTUS1Q9ULD2 1270 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 ADAMTS8Q9UP79 889 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 GCKP35557 465 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 PSME1Q06323 249 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 DNAI1Q9UI46 699 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 KRT86O43790 486 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 KRT83P78385 493 aa7.03□□□□□ -1.28
CSMD1-201ENST00000335551 CFAP65Q6ZU64 1925 aaKnown RBP7.03□□□□□ -1.28
CSMD1-201ENST00000335551 MYOM3Q5VTT5 1437 aa7.02□□□□□ -1.28
CSMD1-201ENST00000335551 RAB11FIP3O75154 756 aa7.02□□□□□ -1.28
CSMD1-201ENST00000335551 ATAD2Q6PL18 1390 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 ATAD2BQ9ULI0 1458 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 MRPS9P82933 396 aaKnown RBP7.02□□□□□ -1.29
CSMD1-201ENST00000335551 DNAJC8O75937 253 aaPredicted RBP7.02□□□□□ -1.29
CSMD1-201ENST00000335551 SLC8A1P32418 973 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 CCDC144CPQ8IYA2 1237 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 TMX1Q9H3N1 280 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 ATP6V1AP38606 617 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 SYTL4Q96C24 671 aaPredicted RBP7.02□□□□□ -1.29
CSMD1-201ENST00000335551 UBA5Q9GZZ9 404 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 EHMT1Q9H9B1 1298 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 THEGQ9P2T0 379 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 MINK1Q8N4C8 1332 aaPredicted RBP7.02□□□□□ -1.29
CSMD1-201ENST00000335551 ANKRD24Q8TF21 1146 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 RAPGEF4Q8WZA2 1011 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 PPP1R12CQ9BZL4 782 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 CALML4Q96GE6 196 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 N4BP3O15049 544 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 HMOX1P09601 288 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 UBASH3AP57075 661 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 IRX4P78413 519 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 USP37Q86T82 979 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 SPAG5Q96R06 1193 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 STX6O43752 255 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 TNNC1P63316 161 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 CCDC63Q8NA47 563 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 BCAP29Q9UHQ4 241 aa7.02□□□□□ -1.29
CSMD1-201ENST00000335551 SYT1P21579 422 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 TCP11L2Q8N4U5 519 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 SPATS2LQ9NUQ6 558 aaKnown RBP7.01□□□□□ -1.29
CSMD1-201ENST00000335551 NDUFAB1O14561 156 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 MYO1BO43795 1136 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 MAP3K21Q5TCX8 1036 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 CROCCP2Q86T23 111 aa7.01□□□□□ -1.29
CSMD1-201ENST00000335551 SPATS2Q86XZ4 545 aaKnown RBP7.01□□□□□ -1.29
CSMD1-201ENST00000335551 RAB3IPQ96QF0 476 aaPredicted RBP7.01□□□□□ -1.29
CSMD1-201ENST00000335551 RNF10Q8N5U6 811 aaKnown RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms