RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 TAF7Q15545 349 aaPredicted RBP9.34□□□□□ -0.91
VMA21-201ENST00000330374 TPCN1Q9ULQ1 816 aa9.34□□□□□ -0.91
VMA21-201ENST00000330374 CRB1P82279 1406 aa9.34□□□□□ -0.91
VMA21-201ENST00000330374 ERICH4A6NGS2 130 aa9.34□□□□□ -0.91
VMA21-201ENST00000330374 TPM3P06753 285 aa9.34□□□□□ -0.91
VMA21-201ENST00000330374 ANKRD7Q92527 254 aa9.34□□□□□ -0.91
VMA21-201ENST00000330374 SSH2Q76I76 1423 aa9.34□□□□□ -0.91
VMA21-201ENST00000330374 ZKSCAN1P17029 563 aaPredicted RBP9.34□□□□□ -0.91
VMA21-201ENST00000330374 ZNF165P49910 485 aa9.34□□□□□ -0.91
VMA21-201ENST00000330374 ST3GAL1Q11201 340 aa9.34□□□□□ -0.91
VMA21-201ENST00000330374 ZSCAN25Q6NSZ9 544 aa9.34□□□□□ -0.91
VMA21-201ENST00000330374 KIF1BPQ96EK5 621 aa9.34□□□□□ -0.91
VMA21-201ENST00000330374 ZFP91Q96JP5 570 aaPredicted RBP9.34□□□□□ -0.91
VMA21-201ENST00000330374 FAM227BQ96M60 508 aa9.34□□□□□ -0.91
VMA21-201ENST00000330374 MLH3Q9UHC1 1453 aa9.33□□□□□ -0.92
VMA21-201ENST00000330374 CACTINQ8WUQ7 758 aaKnown RBP9.33□□□□□ -0.92
VMA21-201ENST00000330374 ERCC4Q92889 916 aaPredicted RBP9.33□□□□□ -0.92
VMA21-201ENST00000330374 EYA1Q99502 592 aa9.33□□□□□ -0.92
VMA21-201ENST00000330374 METP08581 1390 aa9.33□□□□□ -0.92
VMA21-201ENST00000330374 NR1I2O75469 434 aa9.33□□□□□ -0.92
VMA21-201ENST00000330374 PYGBP11216 843 aa9.33□□□□□ -0.92
VMA21-201ENST00000330374 CCDC144BQ3MJ40 725 aa9.33□□□□□ -0.92
VMA21-201ENST00000330374 LARP1Q6PKG0 1096 aaKnown RBP9.33□□□□□ -0.92
VMA21-201ENST00000330374 CCDC144CPQ8IYA2 1237 aa9.33□□□□□ -0.92
VMA21-201ENST00000330374 SSH3Q8TE77 659 aa9.33□□□□□ -0.92
VMA21-201ENST00000330374 RBM8AQ9Y5S9 174 aaKnown RBP9.33□□□□□ -0.92
VMA21-201ENST00000330374 USP27XA6NNY8 438 aa9.33□□□□□ -0.92
VMA21-201ENST00000330374 KIF20AO95235 890 aa9.33□□□□□ -0.92
VMA21-201ENST00000330374 IFIT2P09913 472 aaKnown RBP9.33□□□□□ -0.92
VMA21-201ENST00000330374 RFX1P22670 979 aa9.33□□□□□ -0.92
VMA21-201ENST00000330374 ZNF75DP51815 510 aa9.33□□□□□ -0.92
VMA21-201ENST00000330374 NAP1L2Q9ULW6 460 aaPredicted RBP9.33□□□□□ -0.92
VMA21-201ENST00000330374 TAF6LQ9Y6J9 622 aa9.33□□□□□ -0.92
VMA21-201ENST00000330374 PI4KAP2A4QPH2 592 aa9.32□□□□□ -0.92
VMA21-201ENST00000330374 PI4KAP1Q8N8J0 262 aa9.32□□□□□ -0.92
VMA21-201ENST00000330374 CCDC8Q9H0W5 538 aaPredicted RBP9.32□□□□□ -0.92
VMA21-201ENST00000330374 SIL1Q9H173 461 aa9.32□□□□□ -0.92
VMA21-201ENST00000330374 GOLGA6L19H0YKK7 550 aa9.32□□□□□ -0.92
VMA21-201ENST00000330374 CLASRPQ8N2M8 674 aaKnown RBP9.32□□□□□ -0.92
VMA21-201ENST00000330374 RUFY2Q8WXA3 655 aa9.32□□□□□ -0.92
VMA21-201ENST00000330374 KDM4CQ9H3R0 1056 aa9.32□□□□□ -0.92
VMA21-201ENST00000330374 CTIFO43310 598 aaKnown RBP9.32□□□□□ -0.92
VMA21-201ENST00000330374 TRERF1Q96PN7 1200 aa9.32□□□□□ -0.92
VMA21-201ENST00000330374 SMTNL1A8MU46 457 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 VPS53Q5VIR6 699 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 CEP135Q66GS9 1140 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 AACSQ86V21 672 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 OGFRQ9NZT2 677 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 JAK2O60674 1132 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 CREB3L3Q68CJ9 461 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 LRRC2Q9BYS8 371 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 CTNNA3Q9UI47 895 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 USP16Q9Y5T5 823 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 GNAT3A8MTJ3 354 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 GLRX3O76003 335 aaKnown RBP9.31□□□□□ -0.92
VMA21-201ENST00000330374 BOLA2Q9H3K6 86 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 ST7Q9NRC1 585 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 IL17REQ8NFR9 667 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 ZSCAN31Q96LW9 406 aaPredicted RBP9.31□□□□□ -0.92
VMA21-201ENST00000330374 SH2B1Q9NRF2 756 aaPredicted RBP9.31□□□□□ -0.92
VMA21-201ENST00000330374 CHPF2Q9P2E5 772 aa9.31□□□□□ -0.92
VMA21-201ENST00000330374 ZNF215Q9UL58 517 aaPredicted RBP9.31□□□□□ -0.92
VMA21-201ENST00000330374 H3BQV1 296 aa9.3□□□□□ -0.92
VMA21-201ENST00000330374 NMIQ13287 307 aaPredicted RBP9.3□□□□□ -0.92
VMA21-201ENST00000330374 IFFO2Q5TF58 517 aa9.3□□□□□ -0.92
VMA21-201ENST00000330374 NGDNQ8NEJ9 315 aaKnown RBP9.3□□□□□ -0.92
VMA21-201ENST00000330374 C9orf78Q9NZ63 289 aaPredicted RBP9.3□□□□□ -0.92
VMA21-201ENST00000330374 BECN2A8MW95 431 aa9.3□□□□□ -0.92
VMA21-201ENST00000330374 FGD1P98174 961 aa9.3□□□□□ -0.92
VMA21-201ENST00000330374 BLOC1S2Q6QNY1 142 aa9.3□□□□□ -0.92
VMA21-201ENST00000330374 LEO1Q8WVC0 666 aaPredicted RBP9.3□□□□□ -0.92
VMA21-201ENST00000330374 FTOQ9C0B1 505 aaKnown RBP eCLIP9.3□□□□□ -0.92
VMA21-201ENST00000330374 VGLL3A8MV65 326 aa9.3□□□□□ -0.92
VMA21-201ENST00000330374 ZSWIM6Q9HCJ5 1215 aa9.3□□□□□ -0.92
VMA21-201ENST00000330374 NDUFB9Q9Y6M9 179 aa9.3□□□□□ -0.92
VMA21-201ENST00000330374 CLTCQ00610 1675 aaKnown RBP9.3□□□□□ -0.92
VMA21-201ENST00000330374 RIMS1Q86UR5 1692 aaKnown RBP9.3□□□□□ -0.92
VMA21-201ENST00000330374 ELF2Q15723 593 aa9.3□□□□□ -0.92
VMA21-201ENST00000330374 EDC3Q96F86 508 aaKnown RBP9.3□□□□□ -0.92
VMA21-201ENST00000330374 FEZ1Q99689 392 aa9.3□□□□□ -0.92
VMA21-201ENST00000330374 FSD1Q9BTV5 496 aa9.3□□□□□ -0.92
VMA21-201ENST00000330374 TMEM131LA2VDJ0 1609 aa9.29□□□□□ -0.92
VMA21-201ENST00000330374 GORABQ5T7V8 394 aa9.29□□□□□ -0.92
VMA21-201ENST00000330374 KCNQ3O43525 872 aa9.29□□□□□ -0.92
VMA21-201ENST00000330374 SKILP12757 684 aa9.29□□□□□ -0.92
VMA21-201ENST00000330374 PTPN14Q15678 1187 aa9.29□□□□□ -0.92
VMA21-201ENST00000330374 ECHDC1Q9NTX5 307 aa9.29□□□□□ -0.92
VMA21-201ENST00000330374 CCDC171Q6TFL3 1326 aa9.29□□□□□ -0.92
VMA21-201ENST00000330374 AOX1Q06278 1338 aa9.29□□□□□ -0.92
VMA21-201ENST00000330374 C11orf57Q6ZUT1 292 aaPredicted RBP9.29□□□□□ -0.92
VMA21-201ENST00000330374 ZNF526Q8TF50 670 aaPredicted RBP9.29□□□□□ -0.92
VMA21-201ENST00000330374 PGBD1Q96JS3 809 aa9.29□□□□□ -0.92
VMA21-201ENST00000330374 FMNL2Q96PY5 1086 aa9.29□□□□□ -0.92
VMA21-201ENST00000330374 NLRP6P59044 892 aa9.29□□□□□ -0.92
VMA21-201ENST00000330374 GUCY1B3Q02153 619 aa9.29□□□□□ -0.92
VMA21-201ENST00000330374 KLHDC4Q8TBB5 520 aa9.29□□□□□ -0.92
VMA21-201ENST00000330374 SLC27A2O14975 620 aa9.28□□□□□ -0.92
VMA21-201ENST00000330374 AIMP1Q12904 312 aaKnown RBP9.28□□□□□ -0.92
VMA21-201ENST00000330374 DNAAF4Q8WXU2 420 aa9.28□□□□□ -0.92
VMA21-201ENST00000330374 ZBTB9Q96C00 473 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms