RNA–Protein interactions for RNA: ENST00000327304.9

EXOSC3-201, Transcript of exosome component 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EXOSC3, Length 1,806 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-201ENST00000327304 TRIM28Q13263 835 aaKnown RBP23.47■■□□□ 1.35
EXOSC3-201ENST00000327304 ILDR2Q71H61 639 aa23.47■■□□□ 1.35
EXOSC3-201ENST00000327304 ZNF34Q8IZ26 560 aa23.47■■□□□ 1.35
EXOSC3-201ENST00000327304 CCDC191Q8NCU4 936 aa23.47■■□□□ 1.35
EXOSC3-201ENST00000327304 ZNF652Q9Y2D9 606 aa23.47■■□□□ 1.35
EXOSC3-201ENST00000327304 UBN2Q6ZU65 1347 aa23.47■■□□□ 1.35
EXOSC3-201ENST00000327304 UBTFL1P0CB47 393 aaPredicted RBP23.47■■□□□ 1.35
EXOSC3-201ENST00000327304 CLEC4GQ6UXB4 293 aa23.47■■□□□ 1.35
EXOSC3-201ENST00000327304 NLRP10Q86W26 655 aa23.46■■□□□ 1.35
EXOSC3-201ENST00000327304 JARID2Q92833 1246 aaPredicted RBP23.46■■□□□ 1.35
EXOSC3-201ENST00000327304 UTYO14607 1347 aa23.46■■□□□ 1.35
EXOSC3-201ENST00000327304 RGL2O15211 777 aa23.45■■□□□ 1.34
EXOSC3-201ENST00000327304 SLC15A2Q16348 729 aa23.45■■□□□ 1.34
EXOSC3-201ENST00000327304 STK32BQ9NY57 414 aa23.45■■□□□ 1.34
EXOSC3-201ENST00000327304 PNPLA7Q6ZV29 1317 aa23.45■■□□□ 1.34
EXOSC3-201ENST00000327304 COL23A1Q86Y22 540 aaPredicted RBP23.45■■□□□ 1.34
EXOSC3-201ENST00000327304 GNAI2P04899 355 aa23.44■■□□□ 1.34
EXOSC3-201ENST00000327304 SKAP1Q86WV1 359 aa23.44■■□□□ 1.34
EXOSC3-201ENST00000327304 NIP7Q9Y221 180 aaKnown RBP eCLIP23.44■■□□□ 1.34
EXOSC3-201ENST00000327304 LRRFIP2Q9Y608 721 aaKnown RBP23.44■■□□□ 1.34
EXOSC3-201ENST00000327304 TBC1D9BQ66K14 1250 aa23.43■■□□□ 1.34
EXOSC3-201ENST00000327304 UBE3BQ7Z3V4 1068 aa23.43■■□□□ 1.34
EXOSC3-201ENST00000327304 H7C1W4 665 aa23.43■■□□□ 1.34
EXOSC3-201ENST00000327304 CASP7P55210 303 aa23.43■■□□□ 1.34
EXOSC3-201ENST00000327304 RTL5Q5HYW3 569 aaPredicted RBP23.42■■□□□ 1.34
EXOSC3-201ENST00000327304 FLAD1Q8NFF5 587 aa23.42■■□□□ 1.34
EXOSC3-201ENST00000327304 GYS1P13807 737 aa23.41■■□□□ 1.34
EXOSC3-201ENST00000327304 PDE4AP27815 886 aa23.41■■□□□ 1.34
EXOSC3-201ENST00000327304 BICDL1Q6ZP65 573 aa23.41■■□□□ 1.34
EXOSC3-201ENST00000327304 SUCLG2Q96I99 432 aa23.41■■□□□ 1.34
EXOSC3-201ENST00000327304 MSH5O43196 834 aa23.4■■□□□ 1.34
EXOSC3-201ENST00000327304 SUSD4Q5VX71 490 aa23.4■■□□□ 1.34
EXOSC3-201ENST00000327304 SMC5Q8IY18 1101 aa23.4■■□□□ 1.34
EXOSC3-201ENST00000327304 BACH2Q9BYV9 841 aa23.4■■□□□ 1.34
EXOSC3-201ENST00000327304 QSER1Q2KHR3 1735 aa23.4■■□□□ 1.34
EXOSC3-201ENST00000327304 PARP10Q53GL7 1025 aa23.4■■□□□ 1.34
EXOSC3-201ENST00000327304 KAZALD1Q96I82 304 aa23.4■■□□□ 1.34
EXOSC3-201ENST00000327304 FAM177BA6PVY3 158 aa23.39■■□□□ 1.33
EXOSC3-201ENST00000327304 PCCAP05165 728 aaPredicted RBP23.39■■□□□ 1.33
EXOSC3-201ENST00000327304 CEP85Q6P2H3 762 aa23.39■■□□□ 1.33
EXOSC3-201ENST00000327304 SIRT2Q8IXJ6 389 aa23.39■■□□□ 1.33
EXOSC3-201ENST00000327304 FAM89AQ96GI7 184 aa23.39■■□□□ 1.33
EXOSC3-201ENST00000327304 RGS3P49796 1198 aa23.38■■□□□ 1.33
EXOSC3-201ENST00000327304 SYNE4Q8N205 404 aa23.38■■□□□ 1.33
EXOSC3-201ENST00000327304 ZBTB38Q8NAP3 1195 aaPredicted RBP23.38■■□□□ 1.33
EXOSC3-201ENST00000327304 TRMT112Q9UI30 125 aaKnown RBP23.38■■□□□ 1.33
EXOSC3-201ENST00000327304 PDZRN3Q9UPQ7 1066 aa23.38■■□□□ 1.33
EXOSC3-201ENST00000327304 COL24A1Q17RW2 1714 aa23.38■■□□□ 1.33
EXOSC3-201ENST00000327304 NTSR2O95665 410 aa23.37■■□□□ 1.33
EXOSC3-201ENST00000327304 EPHA10Q5JZY3 1008 aa23.37■■□□□ 1.33
EXOSC3-201ENST00000327304 ANKRD44Q8N8A2 993 aa23.37■■□□□ 1.33
EXOSC3-201ENST00000327304 SETDB2Q96T68 719 aa23.37■■□□□ 1.33
EXOSC3-201ENST00000327304 UTP14AQ9BVJ6 771 aaKnown RBP23.37■■□□□ 1.33
EXOSC3-201ENST00000327304 NFIXQ14938 502 aa23.36■■□□□ 1.33
EXOSC3-201ENST00000327304 BICC1Q9H694 974 aaKnown RBP23.36■■□□□ 1.33
EXOSC3-201ENST00000327304 PPP1R42Q7Z4L9 355 aa23.35■■□□□ 1.33
EXOSC3-201ENST00000327304 RPAP2Q8IXW5 612 aaPredicted RBP23.35■■□□□ 1.33
EXOSC3-201ENST00000327304 HDAC5Q9UQL6 1122 aa23.35■■□□□ 1.33
EXOSC3-201ENST00000327304 GCC1Q96CN9 775 aa23.34■■□□□ 1.33
EXOSC3-201ENST00000327304 SH3TC1Q8TE82 1336 aa23.33■■□□□ 1.33
EXOSC3-201ENST00000327304 CDHR2Q9BYE9 1310 aa23.33■■□□□ 1.33
EXOSC3-201ENST00000327304 CARMIL3Q8ND23 1372 aa23.33■■□□□ 1.32
EXOSC3-201ENST00000327304 PNMA6EA0A0J9YXQ4 647 aa23.33■■□□□ 1.32
EXOSC3-201ENST00000327304 ATP8B2P98198 1209 aa23.33■■□□□ 1.32
EXOSC3-201ENST00000327304 FAM161AQ3B820 660 aa23.33■■□□□ 1.32
EXOSC3-201ENST00000327304 NUTM1Q86Y26 1132 aa23.33■■□□□ 1.32
EXOSC3-201ENST00000327304 PDGFDQ9GZP0 370 aaPredicted RBP23.33■■□□□ 1.32
EXOSC3-201ENST00000327304 IRS4O14654 1257 aaPredicted RBP23.32■■□□□ 1.32
EXOSC3-201ENST00000327304 TM4SF1P30408 202 aa23.32■■□□□ 1.32
EXOSC3-201ENST00000327304 FOXO4P98177 505 aa23.32■■□□□ 1.32
EXOSC3-201ENST00000327304 DDR1Q08345 913 aa23.31■■□□□ 1.32
EXOSC3-201ENST00000327304 MTX1Q13505 466 aa23.31■■□□□ 1.32
EXOSC3-201ENST00000327304 MSL1Q68DK7 614 aa23.31■■□□□ 1.32
EXOSC3-201ENST00000327304 NBPF5PQ86XG9 351 aaPredicted RBP23.31■■□□□ 1.32
EXOSC3-201ENST00000327304 HCLS1P14317 486 aaPredicted RBP23.3■■□□□ 1.32
EXOSC3-201ENST00000327304 RABL6Q3YEC7 729 aaPredicted RBP23.3■■□□□ 1.32
EXOSC3-201ENST00000327304 ERFEQ4G0M1 354 aa23.3■■□□□ 1.32
EXOSC3-201ENST00000327304 NLGN1Q8N2Q7 840 aa23.3■■□□□ 1.32
EXOSC3-201ENST00000327304 PLA2G12BQ9BX93 195 aa23.3■■□□□ 1.32
EXOSC3-201ENST00000327304 DDX60Q8IY21 1712 aaKnown RBP23.29■■□□□ 1.32
EXOSC3-201ENST00000327304 SRGAP3O43295 1099 aa23.29■■□□□ 1.32
EXOSC3-201ENST00000327304 NYXQ9GZU5 481 aa23.29■■□□□ 1.32
EXOSC3-201ENST00000327304 ABCC12Q96J65 1359 aa23.29■■□□□ 1.32
EXOSC3-201ENST00000327304 NUCB1Q02818 461 aa23.29■■□□□ 1.32
EXOSC3-201ENST00000327304 LMBR1LQ6UX01 489 aa23.29■■□□□ 1.32
EXOSC3-201ENST00000327304 LAMB2P55268 1798 aa23.29■■□□□ 1.32
EXOSC3-201ENST00000327304 POLA2Q14181 598 aa23.28■■□□□ 1.32
EXOSC3-201ENST00000327304 SSH3Q8TE77 659 aa23.28■■□□□ 1.32
EXOSC3-201ENST00000327304 POLRMTO00411 1230 aaKnown RBP23.27■■□□□ 1.32
EXOSC3-201ENST00000327304 HMMRO75330 724 aa23.27■■□□□ 1.32
EXOSC3-201ENST00000327304 C8orf34Q49A92 452 aa23.27■■□□□ 1.32
EXOSC3-201ENST00000327304 CCDC24Q8N4L8 307 aa23.27■■□□□ 1.32
EXOSC3-201ENST00000327304 PDE8AO60658 829 aa23.26■■□□□ 1.31
EXOSC3-201ENST00000327304 GTF2E1P29083 439 aaPredicted RBP23.26■■□□□ 1.31
EXOSC3-201ENST00000327304 TPTE2Q6XPS3 522 aa23.26■■□□□ 1.31
EXOSC3-201ENST00000327304 SERPINB2P05120 415 aa23.26■■□□□ 1.31
EXOSC3-201ENST00000327304 MYH3P11055 1940 aa23.26■■□□□ 1.31
EXOSC3-201ENST00000327304 MMP10P09238 476 aa23.25■■□□□ 1.31
EXOSC3-201ENST00000327304 CTSWP56202 376 aa23.25■■□□□ 1.31
EXOSC3-201ENST00000327304 CNBD1Q8NA66 436 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 131.8 ms