RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 DNM1Q05193 864 aaKnown RBP14.52□□□□□ -0.08
USP38-201ENST00000307017 USO1O60763 962 aaKnown RBP14.52□□□□□ -0.09
USP38-201ENST00000307017 PROCA1Q8NCQ7 364 aaPredicted RBP14.52□□□□□ -0.09
USP38-201ENST00000307017 PRIM1P49642 420 aaKnown RBP14.52□□□□□ -0.09
USP38-201ENST00000307017 POTEJP0CG39 1038 aa14.52□□□□□ -0.09
USP38-201ENST00000307017 CCDC6Q16204 474 aa14.52□□□□□ -0.09
USP38-201ENST00000307017 NACADO15069 1562 aa14.51□□□□□ -0.09
USP38-201ENST00000307017 PPP1R12BO60237 982 aaPredicted RBP14.51□□□□□ -0.09
USP38-201ENST00000307017 DDX23Q9BUQ8 820 aaKnown RBP14.51□□□□□ -0.09
USP38-201ENST00000307017 TXLNBQ8N3L3 684 aa14.51□□□□□ -0.09
USP38-201ENST00000307017 KIF1BPQ96EK5 621 aa14.51□□□□□ -0.09
USP38-201ENST00000307017 TRIM47Q96LD4 638 aa14.51□□□□□ -0.09
USP38-201ENST00000307017 WASF1Q92558 559 aa14.51□□□□□ -0.09
USP38-201ENST00000307017 MRVI1Q9Y6F6 885 aa14.51□□□□□ -0.09
USP38-201ENST00000307017 TRIM27P14373 513 aa14.51□□□□□ -0.09
USP38-201ENST00000307017 WDR63Q8IWG1 891 aa14.51□□□□□ -0.09
USP38-201ENST00000307017 FBF1Q8TES7 1133 aa14.51□□□□□ -0.09
USP38-201ENST00000307017 CFAP58Q5T655 872 aa14.51□□□□□ -0.09
USP38-201ENST00000307017 TIGD1Q96MW7 591 aa14.51□□□□□ -0.09
USP38-201ENST00000307017 LIMCH1Q9UPQ0 1083 aa14.51□□□□□ -0.09
USP38-201ENST00000307017 CCDC194A0A1B0GVG4 234 aa14.5□□□□□ -0.09
USP38-201ENST00000307017 CPA1P15085 419 aa14.5□□□□□ -0.09
USP38-201ENST00000307017 LMOD1P29536 600 aaPredicted RBP14.5□□□□□ -0.09
USP38-201ENST00000307017 PICALMQ13492 652 aa14.5□□□□□ -0.09
USP38-201ENST00000307017 XRCC6P12956 609 aaKnown RBP eCLIP14.5□□□□□ -0.09
USP38-201ENST00000307017 TRMT112Q9UI30 125 aaKnown RBP14.5□□□□□ -0.09
USP38-201ENST00000307017 TRIM21P19474 475 aaKnown RBP14.5□□□□□ -0.09
USP38-201ENST00000307017 SP4Q02446 784 aa14.5□□□□□ -0.09
USP38-201ENST00000307017 NOLC1Q14978 699 aaKnown RBP eCLIP14.5□□□□□ -0.09
USP38-201ENST00000307017 GSTA5Q7RTV2 222 aa14.5□□□□□ -0.09
USP38-201ENST00000307017 HINFPQ9BQA5 517 aa14.5□□□□□ -0.09
USP38-201ENST00000307017 GBP3Q9H0R5 595 aa14.5□□□□□ -0.09
USP38-201ENST00000307017 DESP17661 470 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 MRPS9P82933 396 aaKnown RBP14.49□□□□□ -0.09
USP38-201ENST00000307017 MSL1Q68DK7 614 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 ALS2CR12Q96Q35 445 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 TLDC2A0PJX2 215 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 U2AF2P26368 475 aaKnown RBP eCLIP14.49□□□□□ -0.09
USP38-201ENST00000307017 NFE2L2Q16236 605 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 RTEL1-TNFRSF6BF6WH68 1400 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 N4BP3O15049 544 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 SKILP12757 684 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 SYT10Q6XYQ8 523 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 ZKSCAN3Q9BRR0 538 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 CAVIN4Q5BKX8 364 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 HEATR3Q7Z4Q2 680 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 CCDC50Q8IVM0 306 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 GUCA1BQ9UMX6 200 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 KIF21BO75037 1637 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 METAP2P50579 478 aaKnown RBP eCLIP14.49□□□□□ -0.09
USP38-201ENST00000307017 KRT32Q14532 448 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 UAP1Q16222 522 aaPredicted RBP14.49□□□□□ -0.09
USP38-201ENST00000307017 DHX58Q96C10 678 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 PPP1R9BQ96SB3 815 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 PKD2L1Q9P0L9 805 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 NCOA2Q15596 1464 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 ATP2B3Q16720 1220 aa14.49□□□□□ -0.09
USP38-201ENST00000307017 CTCFLQ8NI51 663 aaPredicted RBP14.48□□□□□ -0.09
USP38-201ENST00000307017 KCNK9Q9NPC2 374 aa14.48□□□□□ -0.09
USP38-201ENST00000307017 PRDM11Q9NQV5 511 aa14.48□□□□□ -0.09
USP38-201ENST00000307017 CAPN2P17655 700 aa14.48□□□□□ -0.09
USP38-201ENST00000307017 KRBA2Q6ZNG9 492 aa14.48□□□□□ -0.09
USP38-201ENST00000307017 MICALCLQ6ZW33 695 aa14.48□□□□□ -0.09
USP38-201ENST00000307017 ZNF622Q969S3 477 aaKnown RBP eCLIP14.48□□□□□ -0.09
USP38-201ENST00000307017 ORC3Q9UBD5 711 aaPredicted RBP14.48□□□□□ -0.09
USP38-201ENST00000307017 ZGPATQ8N5A5 531 aaKnown RBP14.48□□□□□ -0.09
USP38-201ENST00000307017 CEP112Q8N8E3 955 aa14.48□□□□□ -0.09
USP38-201ENST00000307017 FSD2A1L4K1 749 aa14.48□□□□□ -0.09
USP38-201ENST00000307017 FGFR1OPO95684 399 aaKnown RBP14.48□□□□□ -0.09
USP38-201ENST00000307017 LRRC9Q6ZRR7 1453 aa14.48□□□□□ -0.09
USP38-201ENST00000307017 EEF2P13639 858 aaKnown RBP14.47□□□□□ -0.09
USP38-201ENST00000307017 TMX3Q96JJ7 454 aa14.47□□□□□ -0.09
USP38-201ENST00000307017 TSC1Q92574 1164 aa14.47□□□□□ -0.09
USP38-201ENST00000307017 TSPY2A6NKD2 308 aa14.47□□□□□ -0.09
USP38-201ENST00000307017 CLGNO14967 610 aa14.47□□□□□ -0.09
USP38-201ENST00000307017 HPDP32754 393 aaPredicted RBP14.47□□□□□ -0.09
USP38-201ENST00000307017 SYNCQ9H7C4 482 aa14.47□□□□□ -0.09
USP38-201ENST00000307017 A0A087WZG4 1122 aa14.47□□□□□ -0.09
USP38-201ENST00000307017 KIF4AO95239 1232 aa14.47□□□□□ -0.09
USP38-201ENST00000307017 Q6ZUG5 572 aa14.47□□□□□ -0.09
USP38-201ENST00000307017 CATIPQ7Z7H3 387 aa14.47□□□□□ -0.09
USP38-201ENST00000307017 RPGRQ92834 1020 aaKnown RBP14.47□□□□□ -0.09
USP38-201ENST00000307017 PA2G4Q9UQ80 394 aaKnown RBP14.47□□□□□ -0.09
USP38-201ENST00000307017 MYOM3Q5VTT5 1437 aa14.46□□□□□ -0.09
USP38-201ENST00000307017 SYT1P21579 422 aa14.46□□□□□ -0.09
USP38-201ENST00000307017 CCT6AP40227 531 aaKnown RBP14.46□□□□□ -0.09
USP38-201ENST00000307017 PTPROQ16827 1216 aa14.46□□□□□ -0.09
USP38-201ENST00000307017 PSMB7Q99436 277 aa14.46□□□□□ -0.09
USP38-201ENST00000307017 MAPK8IP1Q9UQF2 711 aa14.46□□□□□ -0.09
USP38-201ENST00000307017 ANKRD30BQ9BXX2 1392 aa14.46□□□□□ -0.09
USP38-201ENST00000307017 SEC24BO95487 1268 aa14.46□□□□□ -0.09
USP38-201ENST00000307017 EXOC1Q9NV70 894 aa14.46□□□□□ -0.09
USP38-201ENST00000307017 ARID4AP29374 1257 aaPredicted RBP14.46□□□□□ -0.09
USP38-201ENST00000307017 IFIT5Q13325 482 aaKnown RBP14.46□□□□□ -0.09
USP38-201ENST00000307017 ACSBG1Q96GR2 724 aa14.46□□□□□ -0.09
USP38-201ENST00000307017 ZPR1O75312 459 aa14.46□□□□□ -0.1
USP38-201ENST00000307017 GLRX3O76003 335 aaKnown RBP14.46□□□□□ -0.1
USP38-201ENST00000307017 CALM1P0DP23 149 aa14.46□□□□□ -0.1
USP38-201ENST00000307017 CALM2P0DP24 149 aa14.46□□□□□ -0.1
USP38-201ENST00000307017 CALM3P0DP25 149 aa14.46□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms