RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 NUP98P52948 1817 aa18.35■□□□□ 0.53
TPM1-202ENST00000288398 EAPPQ56P03 285 aaPredicted RBP18.34■□□□□ 0.53
TPM1-202ENST00000288398 LDHDQ86WU2 507 aa18.34■□□□□ 0.53
TPM1-202ENST00000288398 ZNF34Q8IZ26 560 aa18.34■□□□□ 0.53
TPM1-202ENST00000288398 NECTIN2Q92692 538 aa18.34■□□□□ 0.53
TPM1-202ENST00000288398 RUNDC1Q96C34 613 aa18.34■□□□□ 0.53
TPM1-202ENST00000288398 L3MBTL3Q96JM7 780 aaPredicted RBP18.34■□□□□ 0.53
TPM1-202ENST00000288398 PSMD1Q99460 953 aa18.34■□□□□ 0.53
TPM1-202ENST00000288398 UTP14AQ9BVJ6 771 aaKnown RBP18.34■□□□□ 0.53
TPM1-202ENST00000288398 HACL1Q9UJ83 578 aa18.34■□□□□ 0.53
TPM1-202ENST00000288398 CLEC11AQ9Y240 323 aa18.34■□□□□ 0.53
TPM1-202ENST00000288398 RIC1Q4ADV7 1423 aa18.33■□□□□ 0.53
TPM1-202ENST00000288398 PPEF1O14829 653 aaPredicted RBP18.33■□□□□ 0.52
TPM1-202ENST00000288398 EIF6P56537 245 aaKnown RBP18.33■□□□□ 0.52
TPM1-202ENST00000288398 AIMP1Q12904 312 aaKnown RBP18.33■□□□□ 0.52
TPM1-202ENST00000288398 ZNF541Q9H0D2 1346 aa18.32■□□□□ 0.52
TPM1-202ENST00000288398 TCERG1O14776 1098 aaKnown RBP18.32■□□□□ 0.52
TPM1-202ENST00000288398 NTSR2O95665 410 aa18.32■□□□□ 0.52
TPM1-202ENST00000288398 HOXA10P31260 410 aaPredicted RBP18.32■□□□□ 0.52
TPM1-202ENST00000288398 CRAMP1Q96RY5 1269 aa18.32■□□□□ 0.52
TPM1-202ENST00000288398 TAF1DQ9H5J8 278 aaPredicted RBP18.32■□□□□ 0.52
TPM1-202ENST00000288398 RNF123Q5XPI4 1314 aa18.31■□□□□ 0.52
TPM1-202ENST00000288398 LARGE2Q8N3Y3 721 aa18.31■□□□□ 0.52
TPM1-202ENST00000288398 ANXA1P04083 346 aa18.3■□□□□ 0.52
TPM1-202ENST00000288398 LMOD1P29536 600 aaPredicted RBP18.3■□□□□ 0.52
TPM1-202ENST00000288398 COPS6Q7L5N1 327 aa18.3■□□□□ 0.52
TPM1-202ENST00000288398 PNMA8AQ86V59 439 aaPredicted RBP18.3■□□□□ 0.52
TPM1-202ENST00000288398 GPC2Q8N158 579 aa18.3■□□□□ 0.52
TPM1-202ENST00000288398 CREBZFQ9NS37 354 aa18.3■□□□□ 0.52
TPM1-202ENST00000288398 GJA3Q9Y6H8 435 aa18.3■□□□□ 0.52
TPM1-202ENST00000288398 SCN4AP35499 1836 aa18.29■□□□□ 0.52
TPM1-202ENST00000288398 FZD9O00144 591 aa18.29■□□□□ 0.52
TPM1-202ENST00000288398 POTEIP0CG38 1075 aa18.29■□□□□ 0.52
TPM1-202ENST00000288398 POTEJP0CG39 1038 aa18.29■□□□□ 0.52
TPM1-202ENST00000288398 EPHX2P34913 555 aa18.29■□□□□ 0.52
TPM1-202ENST00000288398 PDIA6Q15084 440 aa18.29■□□□□ 0.52
TPM1-202ENST00000288398 PROSER3Q2NL68 480 aa18.29■□□□□ 0.52
TPM1-202ENST00000288398 XAGE3Q8WTP9 111 aa18.29■□□□□ 0.52
TPM1-202ENST00000288398 HDGFL1Q5TGJ6 251 aa18.28■□□□□ 0.52
TPM1-202ENST00000288398 NIM1KQ8IY84 436 aa18.28■□□□□ 0.52
TPM1-202ENST00000288398 DDX21Q9NR30 783 aaKnown RBP eCLIP18.28■□□□□ 0.52
TPM1-202ENST00000288398 TRMT112Q9UI30 125 aaKnown RBP18.28■□□□□ 0.52
TPM1-202ENST00000288398 CHL1O00533 1208 aa18.27■□□□□ 0.52
TPM1-202ENST00000288398 SUPT20HQ8NEM7 779 aa18.27■□□□□ 0.52
TPM1-202ENST00000288398 PPIP5K2O43314 1243 aa18.26■□□□□ 0.51
TPM1-202ENST00000288398 DDX46Q7L014 1031 aaKnown RBP18.26■□□□□ 0.51
TPM1-202ENST00000288398 LRP10Q7Z4F1 713 aa18.26■□□□□ 0.51
TPM1-202ENST00000288398 MKRN1Q9UHC7 482 aaKnown RBP18.26■□□□□ 0.51
TPM1-202ENST00000288398 ADAMTS8Q9UP79 889 aa18.26■□□□□ 0.51
TPM1-202ENST00000288398 SH3TC1Q8TE82 1336 aa18.25■□□□□ 0.51
TPM1-202ENST00000288398 HOXB7P09629 217 aa18.25■□□□□ 0.51
TPM1-202ENST00000288398 HSPA1AP0DMV8 641 aaKnown RBP18.25■□□□□ 0.51
TPM1-202ENST00000288398 HSPA1BP0DMV9 641 aaKnown RBP18.25■□□□□ 0.51
TPM1-202ENST00000288398 CALD1Q05682 793 aaKnown RBP18.25■□□□□ 0.51
TPM1-202ENST00000288398 TCIRG1Q13488 830 aa18.25■□□□□ 0.51
TPM1-202ENST00000288398 SLC10A5Q5PT55 438 aa18.25■□□□□ 0.51
TPM1-202ENST00000288398 NLRP10Q86W26 655 aa18.25■□□□□ 0.51
TPM1-202ENST00000288398 CHPF2Q9P2E5 772 aa18.25■□□□□ 0.51
TPM1-202ENST00000288398 DBF4Q9UBU7 674 aaPredicted RBP18.25■□□□□ 0.51
TPM1-202ENST00000288398 ATP6V0A2Q9Y487 856 aa18.25■□□□□ 0.51
TPM1-202ENST00000288398 BBOX1O75936 387 aa18.24■□□□□ 0.51
TPM1-202ENST00000288398 DPP8Q6V1X1 898 aaPredicted RBP18.24■□□□□ 0.51
TPM1-202ENST00000288398 C3orf67Q6ZVT6 689 aa18.24■□□□□ 0.51
TPM1-202ENST00000288398 TRIM35Q9UPQ4 493 aa18.24■□□□□ 0.51
TPM1-202ENST00000288398 ABCC4O15439 1325 aa18.23■□□□□ 0.51
TPM1-202ENST00000288398 TMEM88BA6NKF7 163 aa18.23■□□□□ 0.51
TPM1-202ENST00000288398 HCLS1P14317 486 aaPredicted RBP18.23■□□□□ 0.51
TPM1-202ENST00000288398 KRT24Q2M2I5 525 aa18.23■□□□□ 0.51
TPM1-202ENST00000288398 PLBD2Q8NHP8 589 aa18.23■□□□□ 0.51
TPM1-202ENST00000288398 CFAP44Q96MT7 982 aa18.23■□□□□ 0.51
TPM1-202ENST00000288398 VPS33BQ9H267 617 aa18.23■□□□□ 0.51
TPM1-202ENST00000288398 AOC3Q16853 763 aa18.22■□□□□ 0.51
TPM1-202ENST00000288398 ANKRD13DQ6ZTN6 518 aa18.22■□□□□ 0.51
TPM1-202ENST00000288398 MPNDQ8N594 471 aa18.22■□□□□ 0.51
TPM1-202ENST00000288398 PRKRIP1Q9H875 184 aaPredicted RBP18.22■□□□□ 0.51
TPM1-202ENST00000288398 HYPKQ9NX55 129 aa18.22■□□□□ 0.51
TPM1-202ENST00000288398 SNED1Q8TER0 1413 aa18.22■□□□□ 0.51
TPM1-202ENST00000288398 PASKQ96RG2 1323 aa18.22■□□□□ 0.51
TPM1-202ENST00000288398 COL13A1Q5TAT6 717 aaPredicted RBP18.21■□□□□ 0.51
TPM1-202ENST00000288398 DUSP27Q5VZP5 1158 aa18.21■□□□□ 0.51
TPM1-202ENST00000288398 MAP1SQ66K74 1059 aaPredicted RBP18.21■□□□□ 0.51
TPM1-202ENST00000288398 TNS4Q8IZW8 715 aa18.21■□□□□ 0.51
TPM1-202ENST00000288398 CNTROBQ8N137 903 aa18.21■□□□□ 0.51
TPM1-202ENST00000288398 ANKRD36CQ5JPF3 1778 aa18.21■□□□□ 0.51
TPM1-202ENST00000288398 GOLGA2Q08379 1002 aa18.2■□□□□ 0.5
TPM1-202ENST00000288398 GRAPQ13588 217 aa18.2■□□□□ 0.5
TPM1-202ENST00000288398 TMC4Q7Z404 712 aa18.2■□□□□ 0.5
TPM1-202ENST00000288398 SP8Q8IXZ3 490 aa18.2■□□□□ 0.5
TPM1-202ENST00000288398 GRAPLQ8TC17 118 aaPredicted RBP18.2■□□□□ 0.5
TPM1-202ENST00000288398 AIDAQ96BJ3 306 aa18.2■□□□□ 0.5
TPM1-202ENST00000288398 CHMP4AQ9BY43 222 aa18.2■□□□□ 0.5
TPM1-202ENST00000288398 CNTNAP1P78357 1384 aa18.19■□□□□ 0.5
TPM1-202ENST00000288398 GNAI1P63096 354 aa18.19■□□□□ 0.5
TPM1-202ENST00000288398 ZNRF3Q9ULT6 936 aa18.19■□□□□ 0.5
TPM1-202ENST00000288398 ITGBL1O95965 494 aaPredicted RBP18.18■□□□□ 0.5
TPM1-202ENST00000288398 HSP90B1P14625 803 aaKnown RBP18.18■□□□□ 0.5
TPM1-202ENST00000288398 USP50Q70EL3 339 aaPredicted RBP18.18■□□□□ 0.5
TPM1-202ENST00000288398 RIC3Q7Z5B4 369 aa18.18■□□□□ 0.5
TPM1-202ENST00000288398 ZNF428Q96B54 188 aa18.18■□□□□ 0.5
TPM1-202ENST00000288398 MBIPQ9NS73 344 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms