RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 CBX1P83916 185 aa19.39■□□□□ 0.7
CTCF-201ENST00000264010 MTX1Q13505 466 aa19.39■□□□□ 0.7
CTCF-201ENST00000264010 ZBTB3Q9H5J0 574 aa19.39■□□□□ 0.7
CTCF-201ENST00000264010 ADCY9O60503 1353 aa19.39■□□□□ 0.69
CTCF-201ENST00000264010 IL2RBP14784 551 aa19.39■□□□□ 0.69
CTCF-201ENST00000264010 CCDC173Q0VFZ6 552 aa19.39■□□□□ 0.69
CTCF-201ENST00000264010 CCDC57Q2TAC2 916 aa19.39■□□□□ 0.69
CTCF-201ENST00000264010 CCDC83Q8IWF9 413 aa19.39■□□□□ 0.69
CTCF-201ENST00000264010 CHMP4CQ96CF2 233 aa19.39■□□□□ 0.69
CTCF-201ENST00000264010 CEP126Q9P2H0 1117 aa19.39■□□□□ 0.69
CTCF-201ENST00000264010 H3BQV1 296 aa19.38■□□□□ 0.69
CTCF-201ENST00000264010 IFFO2Q5TF58 517 aa19.38■□□□□ 0.69
CTCF-201ENST00000264010 PLBD2Q8NHP8 589 aa19.38■□□□□ 0.69
CTCF-201ENST00000264010 LMBR1LQ6UX01 489 aa19.38■□□□□ 0.69
CTCF-201ENST00000264010 RBM8AQ9Y5S9 174 aaKnown RBP19.38■□□□□ 0.69
CTCF-201ENST00000264010 PAXIP1Q6ZW49 1069 aaPredicted RBP19.38■□□□□ 0.69
CTCF-201ENST00000264010 TRERF1Q96PN7 1200 aa19.38■□□□□ 0.69
CTCF-201ENST00000264010 LARP6Q9BRS8 491 aaKnown RBP19.38■□□□□ 0.69
CTCF-201ENST00000264010 SNX14Q9Y5W7 946 aa19.38■□□□□ 0.69
CTCF-201ENST00000264010 PI4K2BQ8TCG2 481 aa19.37■□□□□ 0.69
CTCF-201ENST00000264010 UQCRHLA0A096LP55 91 aa19.37■□□□□ 0.69
CTCF-201ENST00000264010 STARD3NLO95772 234 aa19.37■□□□□ 0.69
CTCF-201ENST00000264010 UQCRHP07919 91 aa19.37■□□□□ 0.69
CTCF-201ENST00000264010 NMIQ13287 307 aaPredicted RBP19.37■□□□□ 0.69
CTCF-201ENST00000264010 RNF214Q8ND24 703 aa19.37■□□□□ 0.69
CTCF-201ENST00000264010 NALCNQ8IZF0 1738 aa19.37■□□□□ 0.69
CTCF-201ENST00000264010 IGSF3O75054 1194 aa19.37■□□□□ 0.69
CTCF-201ENST00000264010 RGPD8O14715 1765 aaPredicted RBP19.37■□□□□ 0.69
CTCF-201ENST00000264010 CGNQ9P2M7 1197 aaKnown RBP19.36■□□□□ 0.69
CTCF-201ENST00000264010 NCOA3Q9Y6Q9 1424 aa19.36■□□□□ 0.69
CTCF-201ENST00000264010 CCDC158Q5M9N0 1113 aa19.36■□□□□ 0.69
CTCF-201ENST00000264010 KLHDC4Q8TBB5 520 aa19.36■□□□□ 0.69
CTCF-201ENST00000264010 FIBPO43427 364 aa19.36■□□□□ 0.69
CTCF-201ENST00000264010 AK2P54819 239 aa19.36■□□□□ 0.69
CTCF-201ENST00000264010 TEX13AQ9BXU3 409 aaPredicted RBP19.35■□□□□ 0.69
CTCF-201ENST00000264010 CCDC171Q6TFL3 1326 aa19.35■□□□□ 0.69
CTCF-201ENST00000264010 LARP1BQ659C4 914 aaKnown RBP19.35■□□□□ 0.69
CTCF-201ENST00000264010 EAF2Q96CJ1 260 aaPredicted RBP19.34■□□□□ 0.69
CTCF-201ENST00000264010 MAP7D2Q96T17 732 aa19.34■□□□□ 0.69
CTCF-201ENST00000264010 WASHC4Q2M389 1173 aa19.34■□□□□ 0.69
CTCF-201ENST00000264010 HMG20BQ9P0W2 317 aa19.34■□□□□ 0.69
CTCF-201ENST00000264010 SPATA31A3Q5VYP0 1347 aa19.34■□□□□ 0.69
CTCF-201ENST00000264010 STX6O43752 255 aa19.34■□□□□ 0.69
CTCF-201ENST00000264010 DDIT3P35638 169 aa19.34■□□□□ 0.69
CTCF-201ENST00000264010 TSPY26PQ9H489 355 aa19.34■□□□□ 0.69
CTCF-201ENST00000264010 TFCP2Q12800 502 aa19.33■□□□□ 0.69
CTCF-201ENST00000264010 ZSCAN23Q3MJ62 389 aa19.33■□□□□ 0.69
CTCF-201ENST00000264010 TTC39AQ5SRH9 613 aa19.33■□□□□ 0.69
CTCF-201ENST00000264010 SLAIN2Q9P270 581 aa19.33■□□□□ 0.69
CTCF-201ENST00000264010 U3KPZ7 1027 aaPredicted RBP19.33■□□□□ 0.69
CTCF-201ENST00000264010 LETM1O95202 739 aaPredicted RBP19.33■□□□□ 0.68
CTCF-201ENST00000264010 OVOS2A0A0G2JMS6 1433 aa19.33■□□□□ 0.68
CTCF-201ENST00000264010 FSD2A1L4K1 749 aa19.32■□□□□ 0.68
CTCF-201ENST00000264010 VPS53Q5VIR6 699 aa19.32■□□□□ 0.68
CTCF-201ENST00000264010 CREB3L3Q68CJ9 461 aa19.32■□□□□ 0.68
CTCF-201ENST00000264010 ERVV-2B6SEH9 535 aa19.32■□□□□ 0.68
CTCF-201ENST00000264010 PKP1Q13835 747 aa19.32■□□□□ 0.68
CTCF-201ENST00000264010 LSG1Q9H089 658 aaKnown RBP19.32■□□□□ 0.68
CTCF-201ENST00000264010 ERBB4Q15303 1308 aa19.32■□□□□ 0.68
CTCF-201ENST00000264010 SALL3Q9BXA9 1300 aa19.32■□□□□ 0.68
CTCF-201ENST00000264010 SYCE3A1L190 88 aa19.32■□□□□ 0.68
CTCF-201ENST00000264010 CYP27B1O15528 508 aa19.32■□□□□ 0.68
CTCF-201ENST00000264010 STK3Q13188 491 aa19.32■□□□□ 0.68
CTCF-201ENST00000264010 LMBRD1Q9NUN5 540 aa19.32■□□□□ 0.68
CTCF-201ENST00000264010 IFIT1P09914 478 aaKnown RBP19.31■□□□□ 0.68
CTCF-201ENST00000264010 CUL4AQ13619 759 aa19.31■□□□□ 0.68
CTCF-201ENST00000264010 ZRSR1Q15695 479 aaKnown RBP19.31■□□□□ 0.68
CTCF-201ENST00000264010 AKAP2Q9Y2D5 859 aa19.31■□□□□ 0.68
CTCF-201ENST00000264010 RGPD1P0DJD0 1748 aa19.31■□□□□ 0.68
CTCF-201ENST00000264010 ZSCAN22P10073 491 aaPredicted RBP19.31■□□□□ 0.68
CTCF-201ENST00000264010 IL15P40933 162 aaPredicted RBP19.31■□□□□ 0.68
CTCF-201ENST00000264010 TNNI3KQ59H18 835 aa19.31■□□□□ 0.68
CTCF-201ENST00000264010 RBM27Q9P2N5 1060 aaKnown RBP19.31■□□□□ 0.68
CTCF-201ENST00000264010 FPGT-TNNI3KV9GXZ4 949 aa19.31■□□□□ 0.68
CTCF-201ENST00000264010 TNS3Q68CZ2 1445 aa19.31■□□□□ 0.68
CTCF-201ENST00000264010 BRD1O95696 1058 aa19.31■□□□□ 0.68
CTCF-201ENST00000264010 IGKV5-2P06315 115 aa19.31■□□□□ 0.68
CTCF-201ENST00000264010 GJB2P29033 226 aa19.31■□□□□ 0.68
CTCF-201ENST00000264010 FAM227BQ96M60 508 aa19.3■□□□□ 0.68
CTCF-201ENST00000264010 FKBP4Q02790 459 aaKnown RBP eCLIP19.3■□□□□ 0.68
CTCF-201ENST00000264010 GDPD2Q9HCC8 539 aa19.3■□□□□ 0.68
CTCF-201ENST00000264010 COPRSQ9NQ92 184 aa19.3■□□□□ 0.68
CTCF-201ENST00000264010 A1BGP04217 495 aa19.29■□□□□ 0.68
CTCF-201ENST00000264010 KRT85P78386 507 aa19.29■□□□□ 0.68
CTCF-201ENST00000264010 CCDC85AQ96PX6 553 aaPredicted RBP19.29■□□□□ 0.68
CTCF-201ENST00000264010 GOLIM4O00461 696 aa19.29■□□□□ 0.68
CTCF-201ENST00000264010 CPA1P15085 419 aa19.29■□□□□ 0.68
CTCF-201ENST00000264010 DDX46Q7L014 1031 aaKnown RBP19.29■□□□□ 0.68
CTCF-201ENST00000264010 RUFY3Q7L099 469 aa19.29■□□□□ 0.68
CTCF-201ENST00000264010 TM6SF1Q9BZW5 370 aa19.29■□□□□ 0.68
CTCF-201ENST00000264010 WDR17Q8IZU2 1322 aa19.29■□□□□ 0.68
CTCF-201ENST00000264010 CNNM1Q9NRU3 951 aa19.29■□□□□ 0.68
CTCF-201ENST00000264010 NFAT5O94916 1531 aa19.28■□□□□ 0.68
CTCF-201ENST00000264010 SASH1O94885 1247 aa19.28■□□□□ 0.68
CTCF-201ENST00000264010 CLEC17AQ6ZS10 378 aa19.28■□□□□ 0.68
CTCF-201ENST00000264010 PTH1RQ03431 593 aa19.28■□□□□ 0.68
CTCF-201ENST00000264010 IFIT5Q13325 482 aaKnown RBP19.28■□□□□ 0.68
CTCF-201ENST00000264010 CCDC191Q8NCU4 936 aa19.28■□□□□ 0.68
CTCF-201ENST00000264010 PXDNQ92626 1479 aa19.27■□□□□ 0.68
CTCF-201ENST00000264010 HSP90AB3PQ58FF7 597 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms