RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 KIAA1551Q9HCM1 1747 aa21.4■■□□□ 1.02
SDCBP-201ENST00000260130 TRIM28Q13263 835 aaKnown RBP21.4■■□□□ 1.02
SDCBP-201ENST00000260130 FKBP5Q13451 457 aaPredicted RBP21.4■■□□□ 1.02
SDCBP-201ENST00000260130 METTL22Q9BUU2 404 aaPredicted RBP21.4■■□□□ 1.02
SDCBP-201ENST00000260130 CT47B1P0C2W7 299 aaPredicted RBP21.4■■□□□ 1.02
SDCBP-201ENST00000260130 YBX3P16989 372 aaKnown RBP eCLIP21.4■■□□□ 1.02
SDCBP-201ENST00000260130 MYD88Q99836 296 aa21.4■■□□□ 1.02
SDCBP-201ENST00000260130 ADCY9O60503 1353 aa21.39■■□□□ 1.01
SDCBP-201ENST00000260130 N4BP2Q86UW6 1770 aaPredicted RBP21.39■■□□□ 1.01
SDCBP-201ENST00000260130 TRMT112Q9UI30 125 aaKnown RBP21.38■■□□□ 1.01
SDCBP-201ENST00000260130 BCS1LQ9Y276 419 aa21.38■■□□□ 1.01
SDCBP-201ENST00000260130 RNF123Q5XPI4 1314 aa21.38■■□□□ 1.01
SDCBP-201ENST00000260130 KLRG2A4D1S0 409 aaPredicted RBP21.37■■□□□ 1.01
SDCBP-201ENST00000260130 ABCC12Q96J65 1359 aa21.37■■□□□ 1.01
SDCBP-201ENST00000260130 GRIN3BO60391 1043 aa21.37■■□□□ 1.01
SDCBP-201ENST00000260130 DALRD3Q5D0E6 543 aaKnown RBP21.37■■□□□ 1.01
SDCBP-201ENST00000260130 SSH1Q8WYL5 1049 aa21.37■■□□□ 1.01
SDCBP-201ENST00000260130 ANKRD36CQ5JPF3 1778 aa21.37■■□□□ 1.01
SDCBP-201ENST00000260130 ARFGEF2Q9Y6D5 1785 aa21.37■■□□□ 1.01
SDCBP-201ENST00000260130 SRGNP10124 158 aa21.36■■□□□ 1.01
SDCBP-201ENST00000260130 NEXNQ0ZGT2 675 aa21.36■■□□□ 1.01
SDCBP-201ENST00000260130 ALDH1L2Q3SY69 923 aa21.36■■□□□ 1.01
SDCBP-201ENST00000260130 MRPL50Q8N5N7 158 aaKnown RBP21.36■■□□□ 1.01
SDCBP-201ENST00000260130 ANKRD31Q8N7Z5 1873 aa21.36■■□□□ 1.01
SDCBP-201ENST00000260130 SLC10A5Q5PT55 438 aa21.36■■□□□ 1.01
SDCBP-201ENST00000260130 CCDC191Q8NCU4 936 aa21.36■■□□□ 1.01
SDCBP-201ENST00000260130 ZNF622Q969S3 477 aaKnown RBP eCLIP21.36■■□□□ 1.01
SDCBP-201ENST00000260130 SH3TC1Q8TE82 1336 aa21.35■■□□□ 1.01
SDCBP-201ENST00000260130 DNAAF4Q8WXU2 420 aa21.35■■□□□ 1.01
SDCBP-201ENST00000260130 CACNA1FO60840 1977 aa21.35■■□□□ 1.01
SDCBP-201ENST00000260130 SYNE4Q8N205 404 aa21.34■■□□□ 1.01
SDCBP-201ENST00000260130 TTLL6Q8N841 843 aa21.34■■□□□ 1.01
SDCBP-201ENST00000260130 MASTLQ96GX5 879 aa21.34■■□□□ 1.01
SDCBP-201ENST00000260130 IGKV5-2P06315 115 aa21.33■■□□□ 1.01
SDCBP-201ENST00000260130 STYK1Q6J9G0 422 aa21.33■■□□□ 1.01
SDCBP-201ENST00000260130 FAM89AQ96GI7 184 aa21.33■■□□□ 1.01
SDCBP-201ENST00000260130 BCL2L13Q9BXK5 485 aa21.33■■□□□ 1.01
SDCBP-201ENST00000260130 CWC25Q9NXE8 425 aaPredicted RBP21.33■■□□□ 1.01
SDCBP-201ENST00000260130 RIC1Q4ADV7 1423 aa21.33■■□□□ 1.01
SDCBP-201ENST00000260130 NPR1P16066 1061 aa21.33■■□□□ 1
SDCBP-201ENST00000260130 NLRP3Q96P20 1036 aa21.33■■□□□ 1
SDCBP-201ENST00000260130 SMC4Q9NTJ3 1288 aa21.33■■□□□ 1
SDCBP-201ENST00000260130 F6X3S4 739 aa21.32■■□□□ 1
SDCBP-201ENST00000260130 CRY2Q49AN0 593 aa21.32■■□□□ 1
SDCBP-201ENST00000260130 ZBTB38Q8NAP3 1195 aaPredicted RBP21.31■■□□□ 1
SDCBP-201ENST00000260130 CNKSR1Q969H4 720 aa21.31■■□□□ 1
SDCBP-201ENST00000260130 HCLS1P14317 486 aaPredicted RBP21.31■■□□□ 1
SDCBP-201ENST00000260130 CWF19L2Q2TBE0 894 aaKnown RBP21.31■■□□□ 1
SDCBP-201ENST00000260130 RTL5Q5HYW3 569 aaPredicted RBP21.31■■□□□ 1
SDCBP-201ENST00000260130 NEURL1BA8MQ27 555 aa21.3■■□□□ 1
SDCBP-201ENST00000260130 BRCA1P38398 1863 aaKnown RBP21.3■■□□□ 1
SDCBP-201ENST00000260130 RARSP54136 660 aaKnown RBP21.3■■□□□ 1
SDCBP-201ENST00000260130 C3orf67Q6ZVT6 689 aa21.3■■□□□ 1
SDCBP-201ENST00000260130 LINS1Q8NG48 757 aa21.3■■□□□ 1
SDCBP-201ENST00000260130 PTPRCP08575 1304 aa21.29■■□□□ 1
SDCBP-201ENST00000260130 PCCAP05165 728 aaPredicted RBP21.29■■□□□ 1
SDCBP-201ENST00000260130 DLEC1Q9Y238 1755 aa21.29■■□□□ 1
SDCBP-201ENST00000260130 RPGRQ92834 1020 aaKnown RBP21.29■■□□□ 1
SDCBP-201ENST00000260130 COL11A2P13942 1736 aaPredicted RBP21.28■■□□□ 1
SDCBP-201ENST00000260130 IRS4O14654 1257 aaPredicted RBP21.28■■□□□ 1
SDCBP-201ENST00000260130 ALDH1B1P30837 517 aa21.28■■□□□ 1
SDCBP-201ENST00000260130 BRPF1P55201 1214 aaPredicted RBP21.28■■□□□ 1
SDCBP-201ENST00000260130 TNRC6CQ9HCJ0 1690 aaKnown RBP21.28■■□□□ 1
SDCBP-201ENST00000260130 HOXA10P31260 410 aaPredicted RBP21.27■■□□□ 1
SDCBP-201ENST00000260130 BEND3Q5T5X7 828 aa21.27■■□□□ 1
SDCBP-201ENST00000260130 GCKRQ14397 625 aa21.27■■□□□ 1
SDCBP-201ENST00000260130 PRPF40BQ6NWY9 871 aaKnown RBP21.27■■□□□ 1
SDCBP-201ENST00000260130 HSP90B1P14625 803 aaKnown RBP21.26■□□□□ 0.99
SDCBP-201ENST00000260130 SLC4A10Q6U841 1118 aa21.26■□□□□ 0.99
SDCBP-201ENST00000260130 ARHGAP27Q6ZUM4 889 aa21.26■□□□□ 0.99
SDCBP-201ENST00000260130 JARID2Q92833 1246 aaPredicted RBP21.26■□□□□ 0.99
SDCBP-201ENST00000260130 RBM17Q96I25 401 aaKnown RBP21.26■□□□□ 0.99
SDCBP-201ENST00000260130 C21orf2O43822 256 aa21.24■□□□□ 0.99
SDCBP-201ENST00000260130 CRAMP1Q96RY5 1269 aa21.24■□□□□ 0.99
SDCBP-201ENST00000260130 NOB1Q9ULX3 412 aaKnown RBP21.24■□□□□ 0.99
SDCBP-201ENST00000260130 H7C1W4 665 aa21.24■□□□□ 0.99
SDCBP-201ENST00000260130 SF3B3Q15393 1217 aaKnown RBP21.24■□□□□ 0.99
SDCBP-201ENST00000260130 ZNF219Q9P2Y4 722 aaPredicted RBP21.24■□□□□ 0.99
SDCBP-201ENST00000260130 CDHR2Q9BYE9 1310 aa21.24■□□□□ 0.99
SDCBP-201ENST00000260130 SRCIN1Q9C0H9 1055 aa21.23■□□□□ 0.99
SDCBP-201ENST00000260130 ARFGEF1Q9Y6D6 1849 aa21.22■□□□□ 0.99
SDCBP-201ENST00000260130 PDE8AO60658 829 aa21.22■□□□□ 0.99
SDCBP-201ENST00000260130 UBE3BQ7Z3V4 1068 aa21.22■□□□□ 0.99
SDCBP-201ENST00000260130 BCAR3O75815 825 aa21.21■□□□□ 0.99
SDCBP-201ENST00000260130 ALDH1L1O75891 902 aa21.21■□□□□ 0.99
SDCBP-201ENST00000260130 DDX46Q7L014 1031 aaKnown RBP21.21■□□□□ 0.99
SDCBP-201ENST00000260130 C7orf43Q8WVR3 580 aa21.21■□□□□ 0.99
SDCBP-201ENST00000260130 KIF16BQ96L93 1317 aa21.21■□□□□ 0.99
SDCBP-201ENST00000260130 SOGA3Q5TF21 947 aa21.2■□□□□ 0.98
SDCBP-201ENST00000260130 SLX4Q8IY92 1834 aa21.2■□□□□ 0.98
SDCBP-201ENST00000260130 API5Q9BZZ5 524 aaKnown RBP21.2■□□□□ 0.98
SDCBP-201ENST00000260130 DDX60Q8IY21 1712 aaKnown RBP21.2■□□□□ 0.98
SDCBP-201ENST00000260130 ABCC4O15439 1325 aa21.19■□□□□ 0.98
SDCBP-201ENST00000260130 CASP7P55210 303 aa21.19■□□□□ 0.98
SDCBP-201ENST00000260130 ARHGAP45Q92619 1136 aa21.19■□□□□ 0.98
SDCBP-201ENST00000260130 ANP32EQ9BTT0 268 aa21.19■□□□□ 0.98
SDCBP-201ENST00000260130 BBOX1O75936 387 aa21.18■□□□□ 0.98
SDCBP-201ENST00000260130 C9orf78Q9NZ63 289 aaPredicted RBP21.18■□□□□ 0.98
SDCBP-201ENST00000260130 GRM8O00222 908 aa21.17■□□□□ 0.98
SDCBP-201ENST00000260130 IPO8O15397 1037 aaKnown RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms