RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 EspnlQ3UYR4 1005 aa20.06■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Adam1bQ8R534 806 aa20.06■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Cnksr1A2A9K7 700 aa20.05■□□□□ 0.8
Ctcf-201ENSMUST00000005841 1700113H08RikE9Q9Q5 327 aa20.05■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Ano6Q6P9J9 911 aa20.05■□□□□ 0.8
Ctcf-201ENSMUST00000005841 AatfQ9JKX4 526 aaKnown RBP20.05■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Tpd52l1O54818 204 aa20.05■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Ccdc66Q6NS45 935 aa20.05■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Tmem132aQ922P8 1018 aa20.05■□□□□ 0.8
Ctcf-201ENSMUST00000005841 CenpqQ9CPQ5 267 aa20.05■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Hsp90b1P08113 802 aaKnown RBP20.05■□□□□ 0.8
Ctcf-201ENSMUST00000005841 FanccP50652 591 aa20.05■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Lnx1O70263 728 aa20.04■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Bend3Q6PAL0 825 aa20.04■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Osbpl5Q9ER64 874 aa20.04■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Tmem87aQ8BXN9 555 aa20.04■□□□□ 0.8
Ctcf-201ENSMUST00000005841 NaspQ99MD9 773 aaKnown RBP20.04■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Pcmtd1P59913 357 aa20.03■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Ctdnep1Q3TP92 244 aa20.03■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Dhx40Q6PE54 779 aaKnown RBP20.03■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Arid5bQ8BM75 1188 aaKnown RBP20.03■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Shank2Q80Z38 1476 aa20.03■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Sf3a1Q8K4Z5 791 aaKnown RBP20.03■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Snw1Q9CSN1 536 aaKnown RBP20.03■□□□□ 0.8
Ctcf-201ENSMUST00000005841 F2rP30558 430 aa20.03■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Zfp597E9Q6S0 419 aa20.02■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Irx2P81066 474 aa20.02■□□□□ 0.8
Ctcf-201ENSMUST00000005841 Eya1P97767 591 aa20.02■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Sox12Q04890 314 aa20.01■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Hmgn5Q9JL35 406 aa20.01■□□□□ 0.79
Ctcf-201ENSMUST00000005841 FocadA2AKG8 1798 aa20.01■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Csrnp1P59054 583 aa20■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Bloc1s2Q9CWG9 143 aa20■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Ric1Q69ZJ7 1422 aa20■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Me3Q8BMF3 604 aa20■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Tsr2Q8C8T8 191 aa20■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Top1mtQ8R4U6 593 aa20■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Plin1Q8CGN5 517 aa19.99■□□□□ 0.79
Ctcf-201ENSMUST00000005841 RdxP26043 583 aaKnown RBP19.99■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Cep135Q6P5D4 1140 aa19.99■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Nwd2Q6P5U7 1742 aa19.99■□□□□ 0.79
Ctcf-201ENSMUST00000005841 AceP09470 1312 aa19.99■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Pibf1E9Q6K3 756 aa19.98■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Zfp317Q8C0Q5 607 aa19.98■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Ak2Q9WTP6 239 aa19.98■□□□□ 0.79
Ctcf-201ENSMUST00000005841 1700019A02RikA0A087WPV9 146 aa19.98■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Fyb1O35601 819 aa19.98■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Mtx1P47802 317 aa19.98■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Brf1Q8CFK2 676 aa19.98■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Zranb2Q9R020 330 aaKnown RBP19.98■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Kmt5bQ3U8K7 883 aa19.98■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Ugt1a5B2RT14 529 aa19.97■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Kiaa0754Q69ZZ9 979 aa19.97■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Abca3Q8R420 1704 aa19.97■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Q9D9S1 216 aa19.97■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Kif2aP28740 705 aa19.97■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Babam1Q3UI43 333 aa19.97■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Syt10Q9R0N4 523 aa19.97■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Rad17Q6NXW6 688 aa19.96■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Mad1l1Q9WTX8 717 aaKnown RBP19.96■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Rgs12Q8CGE9 1381 aa19.96■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Otud6bQ8K2H2 294 aa19.96■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Kcnk13Q8R1P5 405 aa19.96■□□□□ 0.79
Ctcf-201ENSMUST00000005841 TnmdQ9EP64 317 aa19.96■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Usp48Q3V0C5 1052 aa19.96■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Usp28Q5I043 1051 aa19.96■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Tgfb1i1Q62219 461 aa19.96■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Tbc1d4Q8BYJ6 1307 aa19.96■□□□□ 0.79
Ctcf-201ENSMUST00000005841 Gpatch11Q3UFS4 262 aa19.95■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Odf2lQ9D478 642 aa19.95■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Rbm8a2A0A0N4SUH6 174 aa19.95■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Clec11aO88200 328 aa19.95■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Panx2Q6IMP4 677 aa19.95■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Zmynd15Q8C0R7 736 aa19.95■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Rbm8aQ9CWZ3 174 aa19.95■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Abcc12Q80WJ6 1366 aa19.95■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Rps6kb1Q8BSK8 525 aa19.95■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Atp1b4Q99ME6 356 aa19.95■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Slit1Q80TR4 1531 aa19.95■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Smarcc2Q6PDG5 1213 aa19.94■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Srgap1Q91Z69 1062 aa19.94■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Chpf2Q3UU43 768 aa19.94■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Sox30Q8CGW4 782 aa19.94■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Tmem2Q5FWI3 1383 aa19.94■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Nfat5Q9WV30 1534 aa19.94■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Dusp10Q9ESS0 483 aa19.94■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Stk3Q9JI10 497 aa19.94■□□□□ 0.78
Ctcf-201ENSMUST00000005841 AW822073A0A0N4SUK1 652 aa19.93■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Ppp6r1Q7TSI3 856 aa19.93■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Kcnj4P52189 445 aa19.93■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Cnnm3Q32NY4 713 aa19.93■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Pcdhb15Q91Y04 786 aa19.93■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Frat1P70339 274 aa19.93■□□□□ 0.78
Ctcf-201ENSMUST00000005841 GscQ02591 256 aa19.93■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Taf3Q5HZG4 932 aa19.93■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Flt4P35917 1363 aa19.92■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Tmem94Q7TSH8 1360 aa19.92■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Zpr1Q62384 459 aa19.92■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Golph3lQ8R088 285 aaKnown RBP19.91■□□□□ 0.78
Ctcf-201ENSMUST00000005841 Ubash3aQ3V3E1 624 aa19.91■□□□□ 0.78
Retrieved 100 of 22,080 RNA–protein pairs in 55.2 ms