RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 ZBED6CLQ96FA7 236 aaPredicted RBP5.56□□□□□ -1.52
USP39-213ENST00000467885 SLC35A4Q96G79 324 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 C16orf58Q96GQ5 468 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 SENP5Q96HI0 755 aaPredicted RBP5.56□□□□□ -1.52
USP39-213ENST00000467885 IMMP1LQ96LU5 166 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 ANKRD27Q96NW4 1050 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 PANX1Q96RD7 426 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 CDRT15Q96T59 188 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 CGREF1Q99674 301 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 WDR77Q9BQA1 342 aaPredicted RBP5.56□□□□□ -1.52
USP39-213ENST00000467885 GPR87Q9BY21 358 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 CADM1Q9BY67 442 aaKnown RBP5.56□□□□□ -1.52
USP39-213ENST00000467885 IKZF5Q9H5V7 419 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 SOX17Q9H6I2 414 aaPredicted RBP5.56□□□□□ -1.52
USP39-213ENST00000467885 RMND5AQ9H871 391 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 IL1RL2Q9HB29 575 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 GID8Q9NWU2 228 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 CMTM6Q9NX76 183 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 MAT2BQ9NZL9 334 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 TMEM181Q9P2C4 612 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 CROTQ9UKG9 612 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 KLK13Q9UKR3 277 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 PCDHGB4Q9UN71 923 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 C19orf53Q9UNZ5 99 aaPredicted RBP5.56□□□□□ -1.52
USP39-213ENST00000467885 TP53BP1Q12888 1972 aaPredicted RBP5.56□□□□□ -1.52
USP39-213ENST00000467885 SPTBP11277 2137 aa5.56□□□□□ -1.52
USP39-213ENST00000467885 CFAP54Q96N23 3096 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 A0A087WV62 115 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 IGHV3-20A0A0C4DH32 117 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 PRAMEF27A3QJZ7 478 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 A8MUA0 341 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 CLIC1O00299 241 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 ANGPT2O15123 496 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 PDPK1O15530 556 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 EMC8O43402 210 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 RAD1O60671 282 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 HNRNPCL1O60812 293 aaKnown RBP5.55□□□□□ -1.52
USP39-213ENST00000467885 ALOX12BO75342 701 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 GCM2O75603 506 aaPredicted RBP5.55□□□□□ -1.52
USP39-213ENST00000467885 KCNH1O95259 989 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 DDAH2O95865 285 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 CBX7O95931 251 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 CLPSP04118 112 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 IGKV3-11P04433 115 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 HEXBP07686 556 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 CYC1P08574 325 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 IFI6P09912 130 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 DDX5P17844 614 aaKnown RBP5.55□□□□□ -1.52
USP39-213ENST00000467885 TNNI3P19429 210 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 CD82P27701 267 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 STAT5AP42229 794 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 EMDP50402 254 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 RASSF2P50749 326 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 NCBP2P52298 156 aaKnown RBP eCLIP5.55□□□□□ -1.52
USP39-213ENST00000467885 PSME3P61289 254 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 MS4A2Q01362 244 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 STX4Q12846 297 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 NFYCQ13952 458 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 CEACAM7Q14002 265 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 SELPLGQ14242 412 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 CAPRIN1Q14444 709 aaKnown RBP5.55□□□□□ -1.52
USP39-213ENST00000467885 NCF4Q15080 339 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 RGNQ15493 299 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 MAPK11Q15759 364 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 ADRM1Q16186 407 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 ZNF628Q5EBL2 1059 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 RABL3Q5HYI8 236 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 SAXO2Q658L1 398 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 KIRREL2Q6UWL6 708 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 GPR155Q7Z3F1 870 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 ANKRD37Q7Z713 158 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 CALHM3Q86XJ0 350 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 DEFB107AQ8IZN7 70 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 PGAM4Q8N0Y7 254 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 OR2L13Q8N349 312 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 LRRC25Q8N386 305 aaPredicted RBP5.55□□□□□ -1.52
USP39-213ENST00000467885 ZNF321PQ8N8H1 164 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 OR4A15Q8NGL6 344 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 OR9A2Q8NGT5 310 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 ZNF675Q8TD23 568 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 ZNF721Q8TF20 911 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 HOXB13Q92826 284 aaPredicted RBP5.55□□□□□ -1.52
USP39-213ENST00000467885 RIT1Q92963 219 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 UTP4Q969X6 686 aaKnown RBP5.55□□□□□ -1.52
USP39-213ENST00000467885 TMEM125Q96AQ2 219 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 NACC2Q96BF6 587 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 FAM120BQ96EK7 910 aaKnown RBP5.55□□□□□ -1.52
USP39-213ENST00000467885 GIMAP5Q96F15 307 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 AURKBQ96GD4 344 aaPredicted RBP5.55□□□□□ -1.52
USP39-213ENST00000467885 SLC39A3Q9BRY0 314 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 NUDT9Q9BW91 350 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 SCNM1Q9BWG6 230 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 RSPO3Q9BXY4 272 aaPredicted RBP5.55□□□□□ -1.52
USP39-213ENST00000467885 RBCK1Q9BYM8 510 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 TRIM8Q9BZR9 551 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 KAT8Q9H7Z6 458 aaKnown RBP5.55□□□□□ -1.52
USP39-213ENST00000467885 TPT1P8Q9HAU6 139 aa5.55□□□□□ -1.52
USP39-213ENST00000467885 PNO1Q9NRX1 252 aaKnown RBP5.55□□□□□ -1.52
USP39-213ENST00000467885 IL17BQ9UHF5 180 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms