RNA–Protein interactions for RNA: snR53

snR53, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR53, Length 91 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR53	snR53	CAF20	P12962	161 aa	Known RBP	0.71	□□□□□ -2.3
snR53	snR53	YOX1	P34161	385 aa		0.71	□□□□□ -2.3
snR53	snR53	ATG19	P35193	415 aa		0.71	□□□□□ -2.3
snR53	snR53	RIA1	P53893	1110 aa		0.71	□□□□□ -2.3
snR53	snR53	YCS4	Q06156	1176 aa		0.71	□□□□□ -2.3
snR53	snR53	UGA4	P32837	571 aa		0.7	□□□□□ -2.3
snR53	snR53	GLO3	P38682	493 aa	Known RBP	0.7	□□□□□ -2.3
snR53	snR53	PAC2	P39937	518 aa		0.7	□□□□□ -2.3
snR53	snR53	YGL140C	P53120	1219 aa		0.7	□□□□□ -2.3
snR53	snR53	UPC2	Q12151	913 aa		0.7	□□□□□ -2.3
snR53	snR53	OSW2	Q12202	724 aa		0.7	□□□□□ -2.3
snR53	snR53	MNL2	Q12205	849 aa		0.7	□□□□□ -2.3
snR53	snR53	HSF1	P10961	833 aa		0.69	□□□□□ -2.3
snR53	snR53	SED4	P25365	1065 aa		0.69	□□□□□ -2.3
snR53	snR53	CPS1	P27614	576 aa		0.69	□□□□□ -2.3
snR53	snR53	NOC3	Q07896	663 aa	Predicted RBP	0.69	□□□□□ -2.3
snR53	snR53	YOR111W	Q99210	232 aa		0.69	□□□□□ -2.3
snR53	snR53	APN1	P22936	367 aa		0.68	□□□□□ -2.3
snR53	snR53	RPN1	P38764	993 aa	Known RBP	0.68	□□□□□ -2.3
snR53	snR53	MXR1	P40029	184 aa		0.68	□□□□□ -2.3
snR53	snR53	CCT7	P42943	550 aa	Known RBP	0.68	□□□□□ -2.3
snR53	snR53	YTH1	Q06102	208 aa	Predicted RBP	0.68	□□□□□ -2.3
snR53	snR53	PEX19	Q07418	342 aa		0.68	□□□□□ -2.3
snR53	snR53	TAF3	Q12297	353 aa		0.68	□□□□□ -2.3
snR53	snR53	PXL1	P36166	706 aa		0.67	□□□□□ -2.3
snR53	snR53	YJL163C	P46996	555 aa		0.67	□□□□□ -2.3
snR53	snR53	MUP1	P50276	574 aa		0.67	□□□□□ -2.3
snR53	snR53	SSL2	Q00578	843 aa		0.67	□□□□□ -2.3
snR53	snR53	YML083C	Q04526	418 aa		0.67	□□□□□ -2.3
snR53	snR53	EAF1	Q06337	982 aa		0.67	□□□□□ -2.3
snR53	snR53	SLK19	Q08581	821 aa	Known RBP	0.67	□□□□□ -2.3
snR53	snR53	MLS1	P30952	554 aa		0.66	□□□□□ -2.3
snR53	snR53	YAT2	P40017	923 aa		0.66	□□□□□ -2.3
snR53	snR53	QDR1	P40475	563 aa		0.66	□□□□□ -2.3
snR53	snR53	LSC1	P53598	329 aa	Known RBP	0.66	□□□□□ -2.3
snR53	snR53	ULP1	Q02724	621 aa		0.66	□□□□□ -2.3
snR53	snR53	TUB3	P09734	445 aa	Known RBP	0.65	□□□□□ -2.31
snR53	snR53	STE14	P32584	239 aa		0.65	□□□□□ -2.31
snR53	snR53	CTF13	P35203	478 aa		0.65	□□□□□ -2.31
snR53	snR53	RGD1	P38339	666 aa		0.65	□□□□□ -2.31
snR53	snR53	ULP2	P40537	1034 aa	Predicted RBP	0.65	□□□□□ -2.31
snR53	snR53	TRS120	Q04183	1289 aa		0.65	□□□□□ -2.31
snR53	snR53	ACM1	Q08981	209 aa		0.65	□□□□□ -2.31
snR53	snR53	DUN1	P39009	513 aa		0.64	□□□□□ -2.31
snR53	snR53	FKH2	P41813	862 aa		0.64	□□□□□ -2.31
snR53	snR53	PSA1	P41940	361 aa	Known RBP	0.64	□□□□□ -2.31
snR53	snR53	HFD1	Q04458	532 aa		0.64	□□□□□ -2.31
snR53	snR53	PRP40	P33203	583 aa	Known RBP	0.63	□□□□□ -2.31
snR53	snR53	ECM21	P38167	1117 aa	Known RBP	0.63	□□□□□ -2.31
snR53	snR53	MTC3	P53077	123 aa		0.63	□□□□□ -2.31
snR53	snR53	YGR053C	P53234	283 aa		0.63	□□□□□ -2.31
snR53	snR53	APJ1	P53940	528 aa		0.63	□□□□□ -2.31
snR53	snR53	SMX3	P54999	86 aa	Predicted RBP	0.63	□□□□□ -2.31
snR53	snR53	FMP30	Q02883	468 aa		0.63	□□□□□ -2.31
snR53	snR53	THS1	P04801	734 aa	Known RBP	0.62	□□□□□ -2.31
snR53	snR53	SEC21	P32074	935 aa	Known RBP	0.62	□□□□□ -2.31
snR53	snR53	SLA2	P33338	968 aa		0.62	□□□□□ -2.31
snR53	snR53	PEX6	P33760	1030 aa		0.62	□□□□□ -2.31
snR53	snR53	SGO1	Q08490	590 aa		0.62	□□□□□ -2.31
snR53	snR53	IRC13	Q08630	104 aa		0.62	□□□□□ -2.31
snR53	snR53	RPL11A	P0C0W9	174 aa	Known RBP	0.61	□□□□□ -2.31
snR53	snR53	KAR2	P16474	682 aa	Known RBP	0.61	□□□□□ -2.31
snR53	snR53	DBP2	P24783	546 aa	Known RBP	0.61	□□□□□ -2.31
snR53	snR53	YBR139W	P38109	508 aa		0.61	□□□□□ -2.31
snR53	snR53	YBR053C	P38235	358 aa		0.61	□□□□□ -2.31
snR53	snR53	GEM1	P39722	662 aa		0.61	□□□□□ -2.31
snR53	snR53	MRK1	P50873	501 aa		0.61	□□□□□ -2.31
snR53	snR53	ROD1	Q02805	837 aa		0.61	□□□□□ -2.31
snR53	snR53	TRM11	Q12463	433 aa		0.61	□□□□□ -2.31
snR53	snR53	RPL11B	Q3E757	174 aa	Predicted RBP	0.61	□□□□□ -2.31
snR53	snR53	PHR1	P05066	565 aa	Known RBP RIP-Chip data	0.6	□□□□□ -2.31	not detected
snR53	snR53	MKK2	P32491	506 aa		0.6	□□□□□ -2.31
snR53	snR53	ECM32	P32644	1121 aa	Known RBP	0.6	□□□□□ -2.31
snR53	snR53	HIS7	P33734	552 aa	Known RBP	0.6	□□□□□ -2.31
snR53	snR53	FAA2	P39518	744 aa		0.6	□□□□□ -2.31
snR53	snR53	SAM37	P50110	327 aa		0.6	□□□□□ -2.31
snR53	snR53	NMA2	P53204	395 aa		0.6	□□□□□ -2.31
snR53	snR53	NUP53	Q03790	475 aa		0.6	□□□□□ -2.31
snR53	snR53	DAL4	Q04895	635 aa		0.6	□□□□□ -2.31
snR53	snR53	EUG1	P32474	517 aa		0.59	□□□□□ -2.31
snR53	snR53	CIC1	P38779	376 aa	Known RBP	0.59	□□□□□ -2.31
snR53	snR53	HGH1	P48362	394 aa	Known RBP	0.59	□□□□□ -2.31
snR53	snR53	UBC9	P50623	157 aa	Predicted RBP	0.59	□□□□□ -2.31
snR53	snR53	TEL2	P53038	688 aa		0.59	□□□□□ -2.31
snR53	snR53	SCW4	P53334	386 aa	Known RBP	0.59	□□□□□ -2.31
snR53	snR53	PHO2	P07269	559 aa		0.58	□□□□□ -2.32
snR53	snR53	RPA135	P22138	1203 aa	Known RBP	0.58	□□□□□ -2.32
snR53	snR53	MBR1	P23493	339 aa		0.58	□□□□□ -2.32
snR53	snR53	SPC29	P33419	253 aa		0.58	□□□□□ -2.32
snR53	snR53	YIL169C	P40442	995 aa		0.58	□□□□□ -2.32
snR53	snR53	NDC80	P40460	691 aa		0.58	□□□□□ -2.32
snR53	snR53	GLG1	P36143	616 aa		0.57	□□□□□ -2.32
snR53	snR53	RPP1	P38786	293 aa		0.57	□□□□□ -2.32
snR53	snR53	TAX4	P47030	604 aa		0.57	□□□□□ -2.32
snR53	snR53	SMA2	Q04658	369 aa		0.57	□□□□□ -2.32
snR53	snR53	SYP1	P25623	870 aa	Known RBP	0.56	□□□□□ -2.32
snR53	snR53	EXO84	P38261	753 aa		0.56	□□□□□ -2.32
snR53	snR53	BDH2	P39713	417 aa		0.56	□□□□□ -2.32
snR53	snR53	FMP52	P40008	231 aa		0.56	□□□□□ -2.32
snR53	snR53	CNN1	P43618	361 aa		0.56	□□□□□ -2.32

Retrieved 100 of 5,963 RNA–protein pairs in 78.9 ms