RNA–Protein interactions for RNA: snR47

snR47, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR47, Length 99 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR47	snR47	HSF1	P10961	833 aa		0.97	□□□□□ -2.25
snR47	snR47	PRP40	P33203	583 aa	Known RBP	0.97	□□□□□ -2.25
snR47	snR47	SLA2	P33338	968 aa		0.97	□□□□□ -2.25
snR47	snR47	PAC2	P39937	518 aa		0.97	□□□□□ -2.25
snR47	snR47	ACF4	P47129	309 aa		0.97	□□□□□ -2.25
snR47	snR47	RIA1	P53893	1110 aa		0.97	□□□□□ -2.25
snR47	snR47	DLT1	Q04216	342 aa		0.97	□□□□□ -2.25
snR47	snR47	ACM1	Q08981	209 aa		0.97	□□□□□ -2.25
snR47	snR47	THS1	P04801	734 aa	Known RBP	0.96	□□□□□ -2.26
snR47	snR47	MET3	P08536	511 aa		0.96	□□□□□ -2.26
snR47	snR47	TAF13	P11747	167 aa		0.96	□□□□□ -2.26
snR47	snR47	SDS24	P38314	527 aa		0.96	□□□□□ -2.26
snR47	snR47	MAF1	P41910	395 aa		0.96	□□□□□ -2.26
snR47	snR47	YGL176C	P46945	554 aa		0.96	□□□□□ -2.26
snR47	snR47	ATG1	P53104	897 aa		0.96	□□□□□ -2.26
snR47	snR47	DAM1	P53267	343 aa		0.96	□□□□□ -2.26
snR47	snR47	KAR2	P16474	682 aa	Known RBP	0.95	□□□□□ -2.26
snR47	snR47	SRP101	P32916	621 aa		0.95	□□□□□ -2.26
snR47	snR47	CTF13	P35203	478 aa		0.95	□□□□□ -2.26
snR47	snR47	ECM21	P38167	1117 aa	Known RBP	0.95	□□□□□ -2.26
snR47	snR47	CIC1	P38779	376 aa	Known RBP	0.95	□□□□□ -2.26
snR47	snR47	GEM1	P39722	662 aa		0.95	□□□□□ -2.26
snR47	snR47	MXR1	P40029	184 aa		0.95	□□□□□ -2.26
snR47	snR47	CCT7	P42943	550 aa	Known RBP	0.95	□□□□□ -2.26
snR47	snR47	SAM37	P50110	327 aa		0.95	□□□□□ -2.26
snR47	snR47	SCW10	Q04951	389 aa		0.95	□□□□□ -2.26
snR47	snR47	GPI13	Q07830	1017 aa		0.95	□□□□□ -2.26
snR47	snR47	OSW2	Q12202	724 aa		0.95	□□□□□ -2.26
snR47	snR47	DED1	P06634	604 aa	Known RBP	0.94	□□□□□ -2.26
snR47	snR47	MLS1	P30952	554 aa		0.94	□□□□□ -2.26
snR47	snR47	MKK2	P32491	506 aa		0.94	□□□□□ -2.26
snR47	snR47	ENT3	P47160	408 aa		0.94	□□□□□ -2.26
snR47	snR47	RPL11A	P0C0W9	174 aa	Known RBP	0.93	□□□□□ -2.26
snR47	snR47	CAF20	P12962	161 aa	Known RBP	0.93	□□□□□ -2.26
snR47	snR47	DBP2	P24783	546 aa	Known RBP	0.93	□□□□□ -2.26
snR47	snR47	SED4	P25365	1065 aa		0.93	□□□□□ -2.26
snR47	snR47	YBR053C	P38235	358 aa		0.93	□□□□□ -2.26
snR47	snR47	YJL206C	P39529	758 aa		0.93	□□□□□ -2.26
snR47	snR47	MPH1	P40562	993 aa		0.93	□□□□□ -2.26
snR47	snR47	YJL163C	P46996	555 aa		0.93	□□□□□ -2.26
snR47	snR47	MRK1	P50873	501 aa		0.93	□□□□□ -2.26
snR47	snR47	YPL109C	Q02981	657 aa		0.93	□□□□□ -2.26
snR47	snR47	ADI1	Q03677	179 aa		0.93	□□□□□ -2.26
snR47	snR47	RPL11B	Q3E757	174 aa	Predicted RBP	0.93	□□□□□ -2.26
snR47	snR47	YOR111W	Q99210	232 aa		0.93	□□□□□ -2.26
snR47	snR47	SEC21	P32074	935 aa	Known RBP	0.92	□□□□□ -2.26
snR47	snR47	ENP2	P48234	707 aa	Known RBP	0.92	□□□□□ -2.26
snR47	snR47	MUP1	P50276	574 aa		0.92	□□□□□ -2.26
snR47	snR47	SMX3	P54999	86 aa	Predicted RBP	0.92	□□□□□ -2.26
snR47	snR47	STP1	Q00947	519 aa		0.92	□□□□□ -2.26
snR47	snR47	ROD1	Q02805	837 aa		0.92	□□□□□ -2.26
snR47	snR47	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	0.92	□□□□□ -2.26	not detected
snR47	snR47	PEX19	Q07418	342 aa		0.92	□□□□□ -2.26
snR47	snR47	SGO1	Q08490	590 aa		0.92	□□□□□ -2.26
snR47	snR47	YLL058W	Q12198	575 aa		0.92	□□□□□ -2.26
snR47	snR47	TRM11	Q12463	433 aa		0.92	□□□□□ -2.26
snR47	snR47	ERG11	P10614	530 aa		0.91	□□□□□ -2.26
snR47	snR47	DBP5	P20449	482 aa	Known RBP	0.91	□□□□□ -2.26
snR47	snR47	YOX1	P34161	385 aa		0.91	□□□□□ -2.26
snR47	snR47	CNN1	P43618	361 aa		0.91	□□□□□ -2.26
snR47	snR47	SIW14	P53965	281 aa		0.91	□□□□□ -2.26
snR47	snR47	NDD1	Q08887	554 aa		0.91	□□□□□ -2.26
snR47	snR47	APN1	P22936	367 aa		0.9	□□□□□ -2.27
snR47	snR47	MBR1	P23493	339 aa		0.9	□□□□□ -2.27
snR47	snR47	SYP1	P25623	870 aa	Known RBP	0.9	□□□□□ -2.27
snR47	snR47	FUN30	P31380	1131 aa		0.9	□□□□□ -2.27
snR47	snR47	GCS1	P35197	352 aa		0.9	□□□□□ -2.27
snR47	snR47	PXL1	P36166	706 aa		0.9	□□□□□ -2.27
snR47	snR47	PNT1	P38969	423 aa		0.9	□□□□□ -2.27
snR47	snR47	HXT13	P39924	564 aa		0.9	□□□□□ -2.27
snR47	snR47	PIC2	P40035	300 aa		0.9	□□□□□ -2.27
snR47	snR47	ULP2	P40537	1034 aa	Predicted RBP	0.9	□□□□□ -2.27
snR47	snR47	NMA2	P53204	395 aa		0.9	□□□□□ -2.27
snR47	snR47	YGR053C	P53234	283 aa		0.9	□□□□□ -2.27
snR47	snR47	HXT17	P53631	564 aa		0.9	□□□□□ -2.27
snR47	snR47	HXT15	P54854	567 aa		0.9	□□□□□ -2.27
snR47	snR47	SSL2	Q00578	843 aa		0.9	□□□□□ -2.27
snR47	snR47	DAL4	Q04895	635 aa		0.9	□□□□□ -2.27
snR47	snR47	GNT1	Q12096	491 aa		0.9	□□□□□ -2.27
snR47	snR47	TUB3	P09734	445 aa	Known RBP	0.89	□□□□□ -2.27
snR47	snR47	ECM32	P32644	1121 aa	Known RBP	0.89	□□□□□ -2.27
snR47	snR47	PEX6	P33760	1030 aa		0.89	□□□□□ -2.27
snR47	snR47	TEL2	P53038	688 aa		0.89	□□□□□ -2.27
snR47	snR47	SRT1	Q03175	343 aa		0.89	□□□□□ -2.27
snR47	snR47	YTH1	Q06102	208 aa	Predicted RBP	0.89	□□□□□ -2.27
snR47	snR47	EAF1	Q06337	982 aa		0.89	□□□□□ -2.27
snR47	snR47	MDM38	Q08179	573 aa		0.89	□□□□□ -2.27
snR47	snR47	PHR1	P05066	565 aa	Known RBP RIP-Chip data	0.88	□□□□□ -2.27	not detected
snR47	snR47	FBP1	P09201	348 aa		0.88	□□□□□ -2.27
snR47	snR47	NUP1	P20676	1076 aa		0.88	□□□□□ -2.27
snR47	snR47	RPC82	P32349	654 aa		0.88	□□□□□ -2.27
snR47	snR47	YKL151C	P36059	337 aa		0.88	□□□□□ -2.27
snR47	snR47	CBR1	P38626	284 aa	Known RBP	0.88	□□□□□ -2.27
snR47	snR47	GIC1	P38785	314 aa		0.88	□□□□□ -2.27
snR47	snR47	FKH2	P41813	862 aa		0.88	□□□□□ -2.27
snR47	snR47	PSA1	P41940	361 aa	Known RBP	0.88	□□□□□ -2.27
snR47	snR47	KAR5	Q04746	504 aa		0.88	□□□□□ -2.27
snR47	snR47	CRR1	Q05790	422 aa		0.88	□□□□□ -2.27
snR47	snR47	SLK19	Q08581	821 aa	Known RBP	0.88	□□□□□ -2.27
snR47	snR47	VPS35	P34110	944 aa		0.87	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 84.5 ms