RNA–Protein interactions for RNA: YOR054C

VHS3, Transcript of Negative regulatory subunit of protein phosphatase 1 Ppz1p, yeast

Gene VHS3, Length 2,025 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHS3	YOR054C	IMD4	P50094	524 aa	Known RBP	4.38	□□□□□ -1.71
VHS3	YOR054C	ZDS1	P50111	915 aa	Known RBP	4.38	□□□□□ -1.71
VHS3	YOR054C	YGR122W	P53272	402 aa		4.38	□□□□□ -1.71
VHS3	YOR054C	COP1	P53622	1201 aa	Known RBP	4.38	□□□□□ -1.71
VHS3	YOR054C	SQS1	P53866	767 aa	Known RBP	4.38	□□□□□ -1.71
VHS3	YOR054C	YNL108C	P53929	270 aa		4.38	□□□□□ -1.71
VHS3	YOR054C	RSM24	Q03976	319 aa		4.38	□□□□□ -1.71
VHS3	YOR054C	DCS2	Q12123	353 aa		4.38	□□□□□ -1.71
VHS3	YOR054C	CLF1	Q12309	687 aa	Predicted RBP	4.38	□□□□□ -1.71
VHS3	YOR054C	APC2	Q12440	853 aa		4.38	□□□□□ -1.71
VHS3	YOR054C	HTZ1	Q12692	134 aa	Known RBP	4.38	□□□□□ -1.71
VHS3	YOR054C	YPR089W	O13585	888 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	MTF2	P10849	440 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	PYC2	P32327	1180 aa	Known RBP	4.37	□□□□□ -1.71
VHS3	YOR054C	HSP78	P33416	811 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	OAF3	P36023	863 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	DBP7	P36120	742 aa	Known RBP	4.37	□□□□□ -1.71
VHS3	YOR054C	UBP13	P38187	747 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	YBR062C	P38239	180 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	SPP381	P38282	291 aa	Predicted RBP	4.37	□□□□□ -1.71
VHS3	YOR054C	YHL017W	P38745	532 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	SPC72	P39723	622 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	GPD2	P41911	440 aa	Known RBP	4.37	□□□□□ -1.71
VHS3	YOR054C	XKS1	P42826	600 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	BRO1	P48582	844 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	MCM6	P53091	1017 aa	Known RBP	4.37	□□□□□ -1.71
VHS3	YOR054C	ESBP6	P53918	673 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	NIS1	P53939	407 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	ERG5	P54781	538 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.37	□□□□□ -1.71	RIP-Chip
VHS3	YOR054C	HEH2	Q03281	663 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	CWC15	Q03772	175 aa	Known RBP	4.37	□□□□□ -1.71
VHS3	YOR054C	TAF9	Q05027	157 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	GPN2	Q08726	347 aa	Predicted RBP	4.37	□□□□□ -1.71
VHS3	YOR054C	BUG1	Q12191	341 aa		4.37	□□□□□ -1.71
VHS3	YOR054C	TOM70	P07213	617 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	MVD1	P32377	396 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	MRE11	P32829	692 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	NUP120	P35729	1037 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	LAS1	P36146	502 aa	Predicted RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	SHM1	P37292	490 aa	Predicted RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	PAM1	P37304	830 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	MUM2	P38236	366 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	FES1	P38260	290 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	TIF4631	P39935	952 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	STB2	P46679	850 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	SGM1	P47166	707 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	ECL1	P48235	211 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	FPK1	P53739	893 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	CIK1	Q01649	594 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	NGL3	Q03210	505 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	PKH3	Q03306	898 aa	Predicted RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	VPS16	Q03308	798 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	HFD1	Q04458	532 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	YDR341C	Q05506	607 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	HCR1	Q05775	265 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	PUS5	Q06244	254 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	RIX7	Q07844	837 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	YIG1	Q08956	461 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	TAF10	Q12030	206 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	HMI1	Q12039	706 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	RAD59	Q12223	238 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	MMP1	Q12372	583 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	ENO1	P00924	437 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	HIS3	P06633	220 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	RSR1	P13856	272 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	THR1	P17423	357 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	RAD57	P25301	460 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	KIP1	P28742	1111 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	HEM3	P28789	327 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	ITR2	P30606	609 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	SIN4	P32259	974 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	VPH2	P32341	215 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	SRB4	P32569	687 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	SMY2	P32909	740 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	ADE17	P38009	592 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	TBS1	P38114	1094 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	ECM21	P38167	1117 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	GGA2	P38817	585 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.36	□□□□□ -1.71	not detected
VHS3	YOR054C	CCT2	P39076	527 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	MAM1	P40065	302 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	BUD6	P41697	788 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	MSN5	P52918	1224 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	SEN54	Q02825	467 aa	Predicted RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	SYH1	Q02875	849 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	CEF1	Q03654	590 aa	Predicted RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	PIG1	Q06216	648 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	YPQ2	Q06328	317 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	NSE1	Q07913	336 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	TFB4	Q12004	338 aa		4.36	□□□□□ -1.71
VHS3	YOR054C	PGA3	Q12746	312 aa	Known RBP	4.36	□□□□□ -1.71
VHS3	YOR054C	PWP1	P21304	576 aa	Known RBP	4.35	□□□□□ -1.71
VHS3	YOR054C	VPS1	P21576	704 aa	Known RBP	4.35	□□□□□ -1.71
VHS3	YOR054C	BAS1	P22035	811 aa		4.35	□□□□□ -1.71
VHS3	YOR054C	DPB2	P24482	689 aa	Predicted RBP	4.35	□□□□□ -1.71
VHS3	YOR054C	HIR2	P32480	875 aa		4.35	□□□□□ -1.71
VHS3	YOR054C	NIP1	P32497	812 aa	Known RBP	4.35	□□□□□ -1.71
VHS3	YOR054C	SSE1	P32589	693 aa	Known RBP	4.35	□□□□□ -1.71
VHS3	YOR054C	GRX4	P32642	244 aa		4.35	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 21.2 ms