RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSL1	YLR005W	EAR1	Q03212	550 aa		4.71	□□□□□ -1.66
SSL1	YLR005W	YIG1	Q08956	461 aa		4.71	□□□□□ -1.66
SSL1	YLR005W	GCD1	P09032	578 aa	Predicted RBP	4.7	□□□□□ -1.66
SSL1	YLR005W	OCT1	P35999	772 aa		4.7	□□□□□ -1.66
SSL1	YLR005W	SEA4	P38164	1038 aa		4.7	□□□□□ -1.66
SSL1	YLR005W	YHL050C	P38721	697 aa		4.7	□□□□□ -1.66
SSL1	YLR005W	YHR219W	P38900	624 aa		4.7	□□□□□ -1.66
SSL1	YLR005W	VAB2	P40003	282 aa		4.7	□□□□□ -1.66
SSL1	YLR005W	GCV1	P48015	400 aa		4.7	□□□□□ -1.66
SSL1	YLR005W	SNU71	P53207	620 aa	Known RBP	4.7	□□□□□ -1.66
SSL1	YLR005W	YAF9	P53930	226 aa		4.7	□□□□□ -1.66
SSL1	YLR005W	MAG2	Q06436	670 aa	Known RBP	4.7	□□□□□ -1.66
SSL1	YLR005W	NOC3	Q07896	663 aa	Predicted RBP	4.7	□□□□□ -1.66
SSL1	YLR005W	PMA1	P05030	918 aa	Known RBP	4.69	□□□□□ -1.66
SSL1	YLR005W	RPP0	P05317	312 aa	Known RBP	4.69	□□□□□ -1.66
SSL1	YLR005W	ADP1	P25371	1049 aa		4.69	□□□□□ -1.66
SSL1	YLR005W	CDC60	P26637	1090 aa	Known RBP	4.69	□□□□□ -1.66
SSL1	YLR005W	MCD4	P36051	919 aa		4.69	□□□□□ -1.66
SSL1	YLR005W	REI1	P38344	393 aa	Predicted RBP	4.69	□□□□□ -1.66
SSL1	YLR005W	SSF1	P38789	453 aa	Predicted RBP	4.69	□□□□□ -1.66
SSL1	YLR005W	KEL1	P38853	1164 aa	Known RBP	4.69	□□□□□ -1.66
SSL1	YLR005W	LYS14	P40971	790 aa		4.69	□□□□□ -1.66
SSL1	YLR005W	NOP2	P40991	618 aa	Known RBP	4.69	□□□□□ -1.66
SSL1	YLR005W	VPS62	P53285	467 aa		4.69	□□□□□ -1.66
SSL1	YLR005W	PMT7	Q06644	662 aa		4.69	□□□□□ -1.66
SSL1	YLR005W	ICL2	Q12031	575 aa		4.69	□□□□□ -1.66
SSL1	YLR005W	YLL054C	Q12244	843 aa		4.69	□□□□□ -1.66
SSL1	YLR005W	RAD24	P32641	659 aa		4.68	□□□□□ -1.66
SSL1	YLR005W	MMM1	P41800	426 aa		4.68	□□□□□ -1.66
SSL1	YLR005W	YFL040W	P43562	540 aa		4.68	□□□□□ -1.66
SSL1	YLR005W	ULP1	Q02724	621 aa		4.68	□□□□□ -1.66
SSL1	YLR005W	PCL8	Q08966	492 aa		4.68	□□□□□ -1.66
SSL1	YLR005W	RPS19A	P07280	144 aa	Known RBP	4.67	□□□□□ -1.66
SSL1	YLR005W	RPS19B	P07281	144 aa	Predicted RBP	4.67	□□□□□ -1.66
SSL1	YLR005W	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.67	□□□□□ -1.66
SSL1	YLR005W	TY1A-DR6	P0CX70	440 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	TY1A-ER1	P0CX71	440 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	TY1A-LR2	P0CX72	440 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	TY1A-PL	P0CX73	440 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	TY1A-JR1	P0CX74	440 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	TY1A-LR3	P0CX75	440 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	TY1A-ML2	P0CX76	440 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	SNF3	P10870	884 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	DAL5	P15365	543 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	SWC3	P31376	625 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	RPT3	P33298	428 aa	Known RBP	4.67	□□□□□ -1.66
SSL1	YLR005W	RVS167	P39743	482 aa	Known RBP	4.67	□□□□□ -1.66
SSL1	YLR005W	SAM37	P50110	327 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	YGR122W	P53272	402 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	ELA1	P53861	379 aa	Predicted RBP	4.67	□□□□□ -1.66
SSL1	YLR005W	TY1A-GR1	Q12085	440 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	CFT2	Q12102	859 aa	Predicted RBP	4.67	□□□□□ -1.66
SSL1	YLR005W	RRI2	Q12348	645 aa		4.67	□□□□□ -1.66
SSL1	YLR005W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.67	□□□□□ -1.66
SSL1	YLR005W	TY1A-OL	Q92392	440 aa	Known RBP	4.67	□□□□□ -1.66
SSL1	YLR005W	CYB2	P00175	591 aa		4.66	□□□□□ -1.66
SSL1	YLR005W	RPS4A	P0CX35	261 aa	Known RBP	4.66	□□□□□ -1.66
SSL1	YLR005W	RPS4B	P0CX36	261 aa	Known RBP	4.66	□□□□□ -1.66
SSL1	YLR005W	MDL2	P33311	773 aa		4.66	□□□□□ -1.66
SSL1	YLR005W	PTK1	P36002	662 aa	Predicted RBP	4.66	□□□□□ -1.66
SSL1	YLR005W	ACA1	P39970	489 aa		4.66	□□□□□ -1.66
SSL1	YLR005W	CIT3	P43635	486 aa		4.66	□□□□□ -1.66
SSL1	YLR005W	YGR045C	P53229	120 aa		4.66	□□□□□ -1.66
SSL1	YLR005W	FMP30	Q02883	468 aa		4.66	□□□□□ -1.66
SSL1	YLR005W	ECM30	Q06673	1274 aa		4.66	□□□□□ -1.66
SSL1	YLR005W	PER1	P25625	357 aa		4.65	□□□□□ -1.66
SSL1	YLR005W	MXR1	P40029	184 aa		4.65	□□□□□ -1.66
SSL1	YLR005W	YIR042C	P40586	236 aa		4.65	□□□□□ -1.66
SSL1	YLR005W	SLS1	P42900	643 aa		4.65	□□□□□ -1.66
SSL1	YLR005W	PIP2	P52960	996 aa		4.65	□□□□□ -1.66
SSL1	YLR005W	YVH1	Q02256	364 aa	Known RBP	4.65	□□□□□ -1.66
SSL1	YLR005W	YCS4	Q06156	1176 aa		4.65	□□□□□ -1.66
SSL1	YLR005W	ECM29	P38737	1868 aa		4.65	□□□□□ -1.67
SSL1	YLR005W	SEC18	P18759	758 aa	Known RBP	4.65	□□□□□ -1.67
SSL1	YLR005W	UGA4	P32837	571 aa		4.65	□□□□□ -1.67
SSL1	YLR005W	YKL077W	P36081	392 aa		4.65	□□□□□ -1.67
SSL1	YLR005W	YBL028C	P38202	106 aa		4.65	□□□□□ -1.67
SSL1	YLR005W	VPS27	P40343	622 aa	Known RBP	4.65	□□□□□ -1.67
SSL1	YLR005W	AIM21	P40563	679 aa		4.65	□□□□□ -1.67
SSL1	YLR005W	CSI1	Q04368	295 aa		4.65	□□□□□ -1.67
SSL1	YLR005W	INM2	Q05533	292 aa		4.65	□□□□□ -1.67
SSL1	YLR005W	AVO1	Q08236	1176 aa		4.65	□□□□□ -1.67
SSL1	YLR005W	MET7	Q08645	548 aa		4.65	□□□□□ -1.67
SSL1	YLR005W	TUB2	P02557	457 aa	Known RBP	4.64	□□□□□ -1.67
SSL1	YLR005W	SUI2	P20459	304 aa	Known RBP	4.64	□□□□□ -1.67
SSL1	YLR005W	LRG1	P35688	1017 aa		4.64	□□□□□ -1.67
SSL1	YLR005W	CST26	P38226	397 aa		4.64	□□□□□ -1.67
SSL1	YLR005W	EXO5	P38289	585 aa		4.64	□□□□□ -1.67
SSL1	YLR005W	CIC1	P38779	376 aa	Known RBP	4.64	□□□□□ -1.67
SSL1	YLR005W	FUN12	P39730	1002 aa	Known RBP	4.64	□□□□□ -1.67
SSL1	YLR005W	IRC24	P40580	263 aa		4.64	□□□□□ -1.67
SSL1	YLR005W	YRB30	P53107	440 aa	Predicted RBP	4.64	□□□□□ -1.67
SSL1	YLR005W	YML020W	Q03722	664 aa		4.64	□□□□□ -1.67
SSL1	YLR005W	YOR131C	Q12486	218 aa		4.64	□□□□□ -1.67
SSL1	YLR005W	PHO4	P07270	312 aa	Known RBP	4.63	□□□□□ -1.67
SSL1	YLR005W	NFS1	P25374	497 aa		4.63	□□□□□ -1.67
SSL1	YLR005W	EUG1	P32474	517 aa		4.63	□□□□□ -1.67
SSL1	YLR005W	PEX13	P80667	386 aa		4.63	□□□□□ -1.67
SSL1	YLR005W	YDL124W	Q07551	312 aa	Known RBP	4.63	□□□□□ -1.67
SSL1	YLR005W	NSI1	Q12457	570 aa		4.63	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 27.1 ms